Pseudochaenichthys georgianus (South Georgia icefish): 117447567
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Entry
117447567 CDS
T09629
Symbol
lrrc4ca
Name
(RefSeq) leucine rich repeat containing 4C, genome duplicate a
KO
K07523
netrin-G1 ligand
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Pathway
pgeo04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
117447567 (lrrc4ca)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
pgeo04515
]
117447567 (lrrc4ca)
Cell adhesion molecules [BR:
pgeo04515
]
Immunoglobulin superfamily
NGL family
117447567 (lrrc4ca)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_8
LRR_4
LRR_5
I-set
Ig_3
ig
V-set
LRR_14
Ig_2
LRR_9
LRRNT
LRR_NXF1-5
DUF7617
Ig_6
Sp38
DUF6821
Syndecan
Motif
Other DBs
NCBI-GeneID:
117447567
NCBI-ProteinID:
XP_033940205
LinkDB
All DBs
Position
6:21973740..22027452
Genome browser
AA seq
647 aa
AA seq
DB search
MLNKMTSYQQQQTMRGPRWNRALSDPLFVLLLALQLLVVAGLVRAQTCPSACSCSNQFSK
VICTRRGLREVPDGISTNTRYLNLQENLIQVIKVDSFKHLRHLEILQLSKNHIRKIELGA
FNGLASLNTLELFDNRLTTIPNGAFEYLSKLKELWLRNNPIESIPSYAFNRVPSLRRLDL
GELKRLSYISEGAFEGLSNLRYLNLGMCNLKEIPNLIPLVKLDELEMSGNQLTVIRPGSF
KGLIHLQKLWMMHAQIQIIERNSFDDLQSLVELNLAHNNLTLLPHDLFTPLHHLERVHLH
HNPWNCNCDILWLSWWLKEMVPANTSCCARCSYPSNHKGRYIGELDQNYFHCYAPVIVEP
PTDLNVTEGSAAELKCRANSLTSVSWITPNGSIMTHGAYKIRISVLNDGTLNFTNVTMQD
TGTYTCMVSNSAGNTTASATLNVSSTENSSFSYFTTVTVETIETPHEGFTTAVQQKVGPT
PSAGTWESVSLTSTTTTTVRTPMSTRATEKTYTIPVTEQGGEDLLNGLDEVMKTTKIIIG
CFVAITLMAAVMLIIFYKMRKQHHQQNHHPTTRTIEIINVDEDCVTGGPGMEGHLTLPPL
EHEHLNHYNAYKTAYNHASTMNSIHSSAHEPLLIRASSKDNVQETQI
NT seq
1944 nt
NT seq
+upstream
nt +downstream
nt
atgttaaacaagatgacctcctatcagcagcagcagacgatgcgaggtcctaggtggaac
cgggccttgtccgaccctttgtttgtgctgcttctggccctccagctgctggtggtggca
gggctggtacgtgctcagacgtgcccctctgcctgctcctgtagtaaccagttcagcaaa
gtcatctgcacccgacgaggcctgcgggaagtccctgatggtatctctaccaacacacgc
tacctgaatctgcaagaaaatcttattcaggtcataaaggtagacagctttaagcatctg
agacacctggagatcctgcagctgagcaaaaaccacatacgcaaaattgagctgggggct
ttcaatggactggccagcctcaataccttggagctttttgataaccgcctcaccactatc
ccaaacggggcatttgaatacctgtccaaactaaaggagctttggctgaggaataacccc
atagagagcattccctcctatgctttcaacagagttccctcattgcggaggttggacctt
ggggagctcaagcgactctcatatatatctgagggggcctttgaagggctgagcaatctg
cgctacttaaatctgggaatgtgcaatctgaaggaaattcccaaccttattcccctggtg
aagctggatgaactggagatgtcggggaaccagctaactgtcatccgacccggctctttt
aaagggctcatccatttgcagaagctatggatgatgcatgcccagatccagataatagaa
aggaactcttttgatgacctgcagtcactagtggagctcaacctagcccataacaatctt
acccttttgccccatgatctattcacccctttacatcacctggagagggtgcacttgcac
cacaacccgtggaattgtaactgtgacatcctatggctaagctggtggcttaaggagatg
gtaccagcaaacaccagctgctgtgcccgctgcagctatccatccaaccataagggaaga
tacattggcgagctggaccagaactactttcactgttacgctcctgttattgtggagccc
cccacagacctaaatgtaacagagggaagtgctgcagagcttaaatgcagagctaactcc
ttgacctcggtgagctggattacacccaatggttccatcatgacacacggtgcttacaag
atccgaatctcagtgctgaatgacggaactctgaacttcactaatgttaccatgcaggac
acaggcacatacacatgtatggtcagtaattctgcaggtaacacaacagcctctgccacg
ctcaatgtgtcctctacagagaacagcagcttcagctacttcaccacagtgacagtggag
accatagaaacaccacatgaaggcttcaccaccgctgtgcaacagaaagtgggccctaca
ccttctgctggtacgtgggagtctgtttcactgacctctacaacgaccaccacagtccgg
accccaatgtccacacgtgccacagagaagacttacacaatccctgtcacggagcagggc
ggggaggatttgctgaacggtttggatgaggtaatgaagacgaccaagatcatcattggt
tgctttgttgcaatcacactcatggcagcggtgatgctgatcatcttctacaagatgcgc
aaacagcaccaccagcagaaccaccacccaaccactcgcaccatagagatcatcaacgtg
gacgaggactgtgtaacagggggcccgggcatggagggccacctgaccctgccgcctctt
gagcatgagcacctcaaccattataacgcctataagactgcatacaaccatgcctccact
atgaactccatacacagctcagcgcacgaacctttgctaatccgggcaagctcaaaagac
aatgtacaagagacccagatctaa
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integrated database retrieval system
