Pseudochaenichthys georgianus (South Georgia icefish): 117447603
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Entry
117447603 CDS
T09629
Name
(RefSeq) neural-cadherin-like
KO
K27892
neural-cadherin
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
pgeo04515
]
117447603
Cell adhesion molecules [BR:
pgeo04515
]
Cadherins
Cadherin related
117447603
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Laminin_G_2
Laminin_G_1
Ig_Shg
Cadherin_CELSR2_9th
Cadherin_pro
EGF
hEGF
Big_9
EGF_2
EGF_Teneurin
EGF_3
Motif
Other DBs
NCBI-GeneID:
117447603
NCBI-ProteinID:
XP_033940260
LinkDB
All DBs
Position
6:complement(17743256..17852598)
Genome browser
AA seq
2900 aa
AA seq
DB search
MIWGILLCCLLKPAAGFQTQERLPFFHGHVFENSPTASKVNGLSIPVRRINAQKWCPVSG
MHFKLYGNGSEDFRAFAHHKRGNILLKTSRVLDREAHSEYLLSVGVCCQTCVSESVVSPV
ATVKVDVLDTNDHEPTFRSADTVHITLDDTTALRSVVCRLQAVDADSGNNAELTYMSVPN
NGSFYVVPKTGEVLLVDSILGLPSKVTFYVFARDHGWPALTSKGVLVTISPQRWATRPAE
LTGSGRGARWPRALLDPGTVVFLNVSEDASVGSVITSLSPSRFPSAAYELVFPESESSPV
AVGRDSGDITISSRLDRETEPVLELTVKIQDKRGPDWYLNKVKLKITDVNDNVPEWNMKP
YPYLAVVSPEASAGTFVYQLQALDGDEGKSGEVEYFLSDGGDGCFAVDKQTGQVVTTGLV
LQRDREYLLSVVALDGLGSRSPPAMLSVVAGARAPQFTNTSYAISIPENTPEGQPFLAVF
AIYFQNQPISYSLLINPSSLFSIKQDTGEISLTRTLDYESDQRRYLLMVRSSEEPGSLST
ATEVQVLITDENDCVPEFLQSIYSVDGVPETVTTATSLLQVLATDCDSGLNAELTYYTLS
PDFSISPHGTVFPAGRLDYERPNHLYEFVVMATDGGEEPHSGTATVRVRMANINDETPEF
SQPVYRTFVSEDAGPNTLVATVLAKDPDGDGIIYSITAGNEEGNFVIDNQKGLIRLRSIP
LPKLQGLEYVLNVTATDDNASGGPHPLFSSARVIVGVDDVNNNKPVFGECQQYREQATVL
ENQPSGTFVLQVHAADADEGANGKVKYGLMHRDSAMPAFRIHQDTGVIVTARRFDRERQR
EYSITVTATDWAEEPLIGICQLTIQIVDQNDNSPKFENLRYEYFLREDTLVGTSFLRVAA
HDDDFGTNAAITYSMSLELPEYLRVNPVTGWVFVNQPISQRTYITRDIVATDGGNRNTSV
ELAVTITDVKNQPPQWETDSYSVVIPENSARDTHIVTIKATSRLGDPRVTYNLEDGMVPE
TNMPVRFYLSPNREDGTASILVSEPLDYETTPVFSLRVRAQNVAAVPLAAFTTVYINITD
VNDNVPFFTSSIYEASVTEGAQIGTSVLQVSAHDKDLGLNGEITYSLLIDSSGDHHLFRI
DPTLGTIYTEAVFDREARSSYLLEVQSEDGQESARPGKNKQPNSDTAYVRVFISDVNDNK
PVFAQRLYEVGVDENADVGLAVVTVSANDEDEGANAKLRYQITSGNKGGVFDIEPEVGTI
FIAQPLDYEQQKRYKLLVLASDGKWEDYAAVVVTVVNKNDEAPVFSMNEYYGSVTEELDG
SPVFVLQVTANDPDKDADQGAIRYSIHGQGAESHFMINDITGEMYAQRTMDREQRSVWRF
VVMATDEEGEGLTGFTDVIINVWDINDNSPAFSCAPDNCHSSVVENSPTGTFVVEMTALD
LDDAAVGQNAILTYRITENVHNANNEHLFTIDSSTGTISVAAEGLDREVAESHRLVLEAR
DGGGMTGSATATIVVTDINDHVPKFREDRCGARVPESSEVDASILEVSAVDPDAGTYGQL
TFSVVAGDPEQRFYMVSHRLEQTGTLRLKKKLDFEKQGEQRFNLTIKVEDSDFSSLIHCQ
VLVQDENDNAPAFNPTSHLLAPLPEDVTVGTTVIQLTATDSDSGPNGDMWYSVLPQSDPH
GHFAVSQNGVITVARPLDRDTVVGYELVVMATDRGTPAHTGSVTVHLPLLDLNDNGPELE
TAYAPVLWENSPAPQVVWLSGGSTLLHVVDRDSPEHGPPFRLSLPSLYSTDFHLQDHGNG
SATLTALRRFDRERQSEFHLPVIMIDSGDPPMTATNTLTITIGDLNDNAHQAGEKDVYVH
SRKGRMVNVALGKVYAPDPDDWDNKTYTLETSAAKYFNLNQSSGVLTLRQDPPAGSYWLR
VGVSDGVWPDVFSGVRVHVRDLEEKAILSSASLRLTGITARDFIDSHVEGRSRLETFWDF
LSETLSVKSGSINIFSIADSQEKTVDVHFYVLTDNGYLRPEKLHAVLAAHKKKLQSVLRV
NVSQVQIDECVRTDCRTSGGCSTQLSISDSPTLVDSGALSLVSVKVTSSAVCGCVAREMT
HQPCASYPSKPCLNGGTCVDTQSGYRCHCPPQLEGPDCQQTRLSFLGNGYAWFPPIRPCF
DSHLSLEFMTEKDDGLLLYAGPLATLLPGEEEDYMAIELIGGTPSLKINHGSGTLVLQLT
NNVGVTDRRWHRLDVRSNSKEVHLTLDRCSSAIVMETEGVDSWAMTEDRSSCEIRGVTPN
RDKYLNGSHVLQLGGVNQNISYEYPQLQHKHYTGCIRNLLLDSKLYDLGSPAESSNTVPG
CSLIDDHCTDMEPLSSCGKRGYCHGEWGSFSCLCEPGFTGPQCDQAVPEFSFDIRSHVQF
QLLWSLPARRTRFQVGVRTRATAAVIFSLLSQEQHEYLHLEVFQGLLAVFYNLGDGDYNL
TLPHHRLSDGEWHEVELDRYGREFTLRLDGGGGRLEVTASPGRSHEIIIDPSAVMLGNSF
PSGHNRSFLGCLRDVRFNSRSLPLGEEPPSDGLQVVTLQGVSAGCSSDACRNHHCSPPLV
CVDLWRHHECRCPPGHITKESSLGKVCVYTLCASRPCRHGTCVAHSPSRYSCRCSEGYKG
RHCEVTLAMFHNVDGNSLSLSSMFAISICVLAFLVLMLGLFLYSCWRRHKGLKEGVYHVS
AHHGEWEDIRENVLNYDEEGGGEQDQNAFNMVELQRSLQPSPAQSLRYSYPQSIISYPQT
KLPQDNNKKGVSNGNGSAAIALRLAFPPSETETETLPSPLIFRRSHKTLSFSSQDLARYL
CEVIRDMEHPGELGTMTTPRRPNGKEHGLAAVRSLSSLSVAQCSEVRVQAQSARMDRFKT
LRAVVSDLRGDSKTPEGKKD
NT seq
8703 nt
NT seq
+upstream
nt +downstream
nt
atgatttggggtattttgttatgctgccttctaaaaccggctgctggatttcaaacgcag
gagcggctgcctttctttcacgggcatgtttttgagaactccccgactgcttccaaagtg
aacggactgagcattccggtgaggcgcatcaacgcgcaaaaatggtgcccagtctccggg
atgcacttcaaactgtacggcaacggcagcgaagatttccgcgccttcgcccaccacaag
cgggggaatatattgctaaaaacttcccgggttttagacagagaggctcactcagaatac
ctgctgagcgtcggggtttgttgccagacgtgcgtctcggagtctgtcgtctccccggtc
gccacggtaaaagtggacgttttggacaccaacgatcatgaaccgacttttcgcagtgca
gacaccgtgcacataactttagacgacaccactgctctccgtagtgtggtgtgcaggctg
caggctgtggacgcagacagcggaaacaacgcagagttaacatacatgtccgtgcccaac
aatggcagtttctatgttgtcccgaaaacaggggaagttttgcttgttgactcaatactg
gggctcccctctaaagtcacattctatgttttcgccagagaccacgggtggcccgctctg
accagtaaaggtgttttggttacgatatctccacagaggtgggccacgcgccctgctgaa
ttaacggggtcagggaggggggcacggtggccgagggctttgcttgacccgggcacggtg
gtttttctcaatgtgtctgaagacgccagcgtcggctcggtcataacgagcctgagcccc
agcaggtttccgtcagccgcctacgagttggttttcccggagtcagagagctccccggtg
gccgtggggcgcgacagtggagatatcacgatcagcagcaggctggatagggagacagag
cctgttctggagctcactgttaagattcaggacaaacgaggcccagactggtacctgaac
aaggtgaagctgaagatcactgatgtcaacgacaacgtccctgagtggaatatgaagccg
tacccgtacctggccgtggtgtctccagaggcctccgcgggaacgtttgtctaccagctc
caggctctcgatggggatgagggcaaaagcggagaggtggaatactttttgtcggatggt
ggtgacggctgctttgcagtggacaagcagacaggccaggtggtgaccacagggctggtg
cttcagagggacagagagtacttgttaagcgtggtagctctcgatggcttgggcagccgc
agcccccccgccatgctctctgtggtggcaggagccagagcaccgcagttcaccaacacc
agctacgccatatccataccggagaacacgcctgaaggacagcccttcctggctgtgttt
gccatttatttccagaaccagcctatcagctacagcctgctgatcaatcccagtagcctt
ttcagcatcaagcaggacacaggggagatcagtctgaccaggacgctagattacgagagt
gaccagcgtcgctacctgctaatggtgcgaagcagcgaagagcccggcagcctcagtact
gccacagaggttcaggtgttgataacggatgagaacgattgtgtcccggagttcctccaa
tccatctacagtgtggatggagtccctgagactgtaaccacagcaacatcgctgctgcag
gtgttggccacggactgtgactcggggttaaacgctgagctcacctattacaccctgagt
ccggacttcagcatttcaccgcacgggaccgttttccctgcggggcggctggattacgag
aggcccaaccatctgtacgagtttgttgtgatggcgacggacggcggggaggagcctcac
tcggggacggctacggttcgtgtgaggatggcaaacatcaacgatgagacccccgagttc
tcccagcctgtataccgaacgtttgtttctgaggacgctgggcccaatactctggtcgcc
acagttctggccaaagacccagatggagatggtataatctactccataacagcaggaaac
gaggagggaaacttcgtcattgacaaccagaaaggattgattcgtctccgctccattccc
ctgcccaagcttcaaggcctggagtacgtcttgaatgtaacggccacagatgacaatgca
tcaggcgggccacaccctctcttctcaagcgctcgagtcattgtaggagttgatgatgtc
aacaacaacaaacctgtttttggggagtgccagcaatatcgtgagcaggctacagtgcta
gagaaccagccatcggggacttttgtgttgcaagtgcatgcggcggatgcagatgaggga
gcaaatggaaaagtcaaatatggcttaatgcacagagacagcgccatgcctgccttcaga
attcatcaagacacaggagtgattgtgacagccaggcgtttcgacagggagcggcagaga
gagtattcaattacagtaacggccactgattgggcggaggagccgctcatcggaatttgt
cagctcaccatccaaatagtggaccagaatgataacagccccaagtttgagaatttgcgc
tatgagtactttctgagagaagacactttggtcggtaccagtttccttcgcgtggcagct
cacgatgatgactttggaactaatgcagctatcacttactccatgtccctggagcttcct
gagtacctgagggtcaaccctgtcactggatgggtcttcgttaatcagcccatctcacag
agaacctacatcacgcgggacatcgtagctacggacggggggaatcgtaacacttctgtg
gagctggcagtcaccatcaccgacgtgaagaaccagcctccacagtgggagacggacagc
tacagcgtcgtcattccggaaaattctgcaagggacacacatatagtgacaatcaaggcg
acctctcggctgggtgacccgagggtgacctataacctggaggatgggatggtccctgaa
accaacatgccggtccgtttctacctctcccccaaccgcgaagacggcactgcgtccatt
ctggtgtctgagccgctggactatgagaccacacccgtcttctctctccgggttcgagca
cagaatgtggctgccgtgcctctcgccgctttcactacagtttatatcaacattacagat
gtcaatgacaacgtgccatttttcacctcctccatctacgaggcctcagtaacagaagga
gctcagatagggacttcggttctccaagtgtccgctcatgacaaagacctgggtctgaat
ggagagatcacttactctctgctgattgacagcagcggggaccaccatctattccgcata
gacccaacacttgggaccatctacacagaagctgtgtttgatcgtgaggcccgtagctcc
tatttgctggaggttcagtcagaagacggccaggagtcggcgcgacctggcaaaaacaaa
cagcccaactcagacacagcgtatgtcagggttttcatcagcgacgtcaacgacaacaaa
ccagtctttgctcagcgactgtatgaagtcggtgtcgatgaaaatgcagatgtgggcctg
gctgttgtcactgttagtgctaacgacgaggatgaaggagccaatgccaaactgcgctac
cagattacatctggcaacaaaggaggtgtttttgacatcgagccagaggtggggacgatc
tttattgcacagccactggactatgaacagcagaagagatacaagctactggtcctcgcc
tccgatgggaagtgggaagactacgctgcggtggtggttaccgtggttaacaagaacgac
gaggcgcctgtgttctccatgaatgagtactatggatccgtcacagaggagcttgacggg
tctcctgtgttcgtgctacaggtgacagcgaatgaccccgacaaagacgcagaccaaggc
gccatccggtattccattcacggccaaggggcagagtcacacttcatgatcaatgacatc
acgggggagatgtatgcccagcgcaccatggaccgagagcagcgttcggtctggcgcttc
gttgtcatggcaacggacgaagagggcgagggacttactggctttacggatgttattatc
aacgtgtgggacatcaatgacaattcccccgccttctcgtgtgcgccggataattgccac
agtagcgttgtggagaactcccccactggaacctttgttgtggaaatgacggcgttagac
cttgacgacgcagcagtaggtcagaacgcaatcctgacatatcggattacagagaacgtg
cacaacgcaaacaacgaacaccttttcactattgattccagcaccggcactatatctgtg
gcggcagagggtctggaccgggaggttgctgaaagccaccgtctggtattggaggcccgt
gacggcggaggtatgacaggttcagcgaccgccactatagtggtgacggacatcaacgac
catgtgccgaagttcagagaagaccgctgtggcgctcgtgtgccggagagctcagaggtc
gacgcttctatcctggaagtgagcgccgtggatcctgacgctggcacttacggacagctg
accttcagcgtggtggcaggagaccccgagcagcggttctacatggtgagtcacagactg
gagcagacgggcaccctgaggctgaagaagaagctggactttgagaagcaaggggagcag
cggttcaacctcaccatcaaggtggaggactctgacttctccagccttatccactgccag
gttcttgtgcaggatgagaacgacaacgctcccgctttcaaccccacctcccacctgctc
gcccctttgcccgaggatgtaaccgtgggaactactgttattcagctcacagccactgac
tctgactcggggccaaacggggacatgtggtacagcgttctccctcagtctgacccgcat
ggacactttgcagtcagccaaaacggcgtgattacagttgccaggcctctggatcgggac
acagtggtgggttatgagctggttgtcatggcgacagaccggggtacccctgcacatact
ggcagtgtcacggtccacttgccgctgcttgacttgaatgacaacgggccggagctggag
acagcctacgctccggtgctgtgggagaacagcccggcccctcaagtggtgtggctcagc
gggggctccactctgctgcacgttgtggacagagactccccagagcacgggcctcctttc
agactctctctgccctcactttactccactgacttccatctgcaggatcacgggaacggc
tcggccacgctcactgctctgaggagattcgatagggaaaggcagagcgagttccacttg
cccgtgattatgattgacagcggcgatccgccaatgacagccacaaacacgctcacaatc
accattggcgacctgaatgataacgcccatcaggccggagagaaagatgtctatgtgcat
agccgcaagggaaggatggtgaatgtggcactggggaaggtgtatgccccagatcctgat
gactgggacaacaagacctacactctggagacaagcgcagccaaatacttcaatctgaac
cagagctcaggagtgctgaccctccgccaagaccctccagcaggcagctactggttgagg
gtcggggtgtctgatggcgtgtggcccgacgtgttctcaggggtcagagttcatgtcagg
gatctggaggaaaaggccatcctgtcgtccgcctcgctgcgtctgaccggcataacagcg
agagattttatcgactctcacgtcgagggaaggagtcggctggagacgttctgggacttt
ctgtctgaaaccctgtctgtcaaatcagggagcatcaacatattcagcatcgctgacagc
caggagaaaaccgtggatgttcatttctatgtgctaactgataatggctacctgcgccca
gaaaaactgcacgctgtcctcgccgcacataaaaagaagctgcagtcagtgttgcgtgtg
aatgtgagccaggtgcagatagacgagtgtgtgcgcacggactgcaggacgtccggcggc
tgctccacacagttgagcatcagtgactcgcccaccctggtggactcgggggctctctcc
ctggtctcagtgaaggtgacttcctccgccgtgtgtggctgcgttgccagggaaatgacc
caccaaccctgcgcctcctaccccagcaagccctgccttaacgggggaacctgcgtcgac
acccagagtggatacaggtgtcactgccccccgcagctcgaggggccagactgtcagcag
acgaggcttagtttccttggcaacggttatgcctggtttccccccatcaggccttgcttt
gatagccatctttcactggagtttatgacggagaaagacgatggactgttactgtacgca
ggcccattggccactctgctgcccggggaggaagaggactacatggccatagagctgatt
ggtgggacacccagtctgaagattaaccacggctctgggacgctggtcctccagttaacc
aataacgtcggtgtgactgacaggcgctggcaccgcctcgatgtgcggagcaacagcaaa
gaagtgcacctcactctcgatcgatgttccagtgcgattgtcatggagacagaaggcgtg
gactcatgggcaatgacagaagaccgctcatcctgtgaaatccgcggggtcacacccaac
agggacaagtacctgaatggaagtcatgtactgcagctcggaggggtcaaccagaacata
tcttacgaatacccccagctgcagcacaaacactacactggatgcataaggaacctgctc
ctggacagcaagctatacgaccttggttccccggctgaatcctccaacactgtgccaggc
tgctctcttattgatgaccactgcaccgacatggagcccctgtcctcctgcggcaagagg
ggctactgtcatggagagtgggggtccttcagctgcctgtgtgaacctggctttacaggg
cctcagtgtgatcaagctgtgccagagttctccttcgacatccggagccacgtacagttc
cagctcttgtggtcgctgcctgcgcgacggaccaggttccaggtcggggtccggacgcgt
gctaccgcagctgtcatcttcagcctgctctcccaggagcagcatgaatacctacactta
gaggtttttcagggtctactcgctgttttctacaacctcggggatggagactacaacctg
acactgccccaccaccgcctcagtgatggagagtggcatgaggtggagctggatcggtac
ggcagggagttcaccctgcgactggacgggggtggggggcgactagaagtcacagcctcg
cctgggcggagtcacgagatcattatcgacccctccgccgtgatgctcggaaactctttt
ccctcgggacacaacaggagcttcctcggatgtttgcgagatgtgaggttcaacagccgc
tccttacctctgggtgaggagccgccttcagatgggcttcaggtggtcaccttgcagggg
gtctctgccggctgctcttcagacgcctgcaggaatcatcactgctcccctcccctggtc
tgcgtggacctctggagacaccacgagtgcaggtgccctccaggccacatcaccaaagag
agctcccttggtaaagtgtgcgtctacacgctgtgcgccagccgtccctgtcgccatggc
acctgcgtggcccactctccatcccgctactcctgccgttgcagcgaaggctacaaggga
cgccactgcgaggtgacgctcgccatgttccacaacgtggacggaaacagcctcagcctc
agctccatgttcgccatcagcatctgtgtcttggcctttctagtgttgatgctgggcctg
ttcctgtactcctgctggaggagacacaaaggtctgaaagaaggtgtgtaccatgtgtcc
gcgcaccatggcgagtgggaggacatccgagaaaatgtgctcaactacgacgaggaaggg
ggaggcgagcaggaccagaacgcctttaatatggtggagctgcagcgctccctccagccc
agcccggcgcagtcgctccgctacagttacccacaaagcatcatctcctacccacagact
aagcttccccaggacaacaacaagaagggggtgtctaatgggaatggcagtgcagctata
gctctgcgcctggccttccccccctcagagacagaaacagaaacactgccctcccctctg
atcttccgccgctcccacaaaaccctctccttctccagccaggacttggcccgctacctg
tgtgaggtcatcagggacatggagcacccgggggagctgggcaccatgacaacgccacgc
cgccccaacggaaaggagcacggcctggcggcggtgcgctccctcagctccctcagtgtg
gctcagtgctcagaggtcagagttcaggcccagagcgcccgcatggacaggttcaaaacc
ctccgagccgtggtcagcgatttgagaggagactccaagactccagagggcaagaaagac
taa
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