Pseudochaenichthys georgianus (South Georgia icefish): 117447748
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Entry
117447748 CDS
T09629
Symbol
myo5c
Name
(RefSeq) unconventional myosin-Vc isoform X1
KO
K10357
myosin V
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Pathway
pgeo04814
Motor proteins
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09140 Cellular Processes
09142 Cell motility
04814 Motor proteins
117447748 (myo5c)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pgeo03019
]
117447748 (myo5c)
04131 Membrane trafficking [BR:
pgeo04131
]
117447748 (myo5c)
03029 Mitochondrial biogenesis [BR:
pgeo03029
]
117447748 (myo5c)
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
pgeo04812
]
117447748 (myo5c)
Messenger RNA biogenesis [BR:
pgeo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Cargo complex
117447748 (myo5c)
mRNA cycle factors
P-body specific factors
117447748 (myo5c)
Membrane trafficking [BR:
pgeo04131
]
Others
Actin-binding proteins
Myosins
117447748 (myo5c)
Mitochondrial biogenesis [BR:
pgeo03029
]
Mitochondrial quality control factors
Mitochondrial dynamics
Retention of mitochondria
117447748 (myo5c)
Cytoskeleton proteins [BR:
pgeo04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Myosins
117447748 (myo5c)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Myosin_head
DIL
IQ
AAA_16
AAA_22
NPHP3_N
Motif
Other DBs
NCBI-GeneID:
117447748
NCBI-ProteinID:
XP_033940510
LinkDB
All DBs
Position
6:complement(31539869..31550210)
Genome browser
AA seq
1743 aa
AA seq
DB search
MALLELYTEYNRVWIPDAGHVWKSAEILRDFHLGDNVLDLLLEDGTENHYPVDPAKPQLP
PLRNPDILVGENDLTALSYLHEPAVLHNLKVRFVESKIIYTYCGIILVAVNPYKQLHIYG
DAIIHAYSGQNMGDMDPHIFAVAEEAYKQMARNHKNQSIIVSGESGAGKTVSARYAMRYF
AVVSKSGSKTRVEDKVLASNPITEAIGNAKTTRNDNSSRFGKYTEIGFDRRYRIIGANMR
TYLLEKSRVVFQADNERNYHIFYQMCSCAHLPEFNHLKLLSADEFAYTRMGGEITIEGVD
DGKDMEETRRTFSLLGLMEDFQSDVFKVLAAVLHLGNVEIKDSGDGKSSVPPSDPHLAVF
CELLGVRAEGLARWLCHRRIVLVAETVVKPVPKERAVNARDALAKQIYAHLFDCIINKIN
TALQVPGKQHAFIGVLDIYGFETFDTNSFEQFCINYANEKLQQQFNLHVFKLEQEEYMKE
DIPWTLIDFYDNQPVIDLIEAKMGILDLLDEECLFPQGTDRSWLQKLFKYLDANPLFEKP
RLSNEAFVIQHFADKVEYQCRGFLEKNRDTLYEELVDMLRVSEFPFVANFFQEEKQKPVT
TKVVQVRPARPGVKPANKQQRASVGDKFCSSLSLLMETLNATTPHYVRCIKPNDEKLPFE
YDSRRVVQQLRACGVLETIRISAQSYPSRWTYIEFYSRYSILMSHQEGDLSDKKQTCKNV
LQRLIQDSNQYKFGRTKIFFRAGQVAYLEKLRLDRLRGACVTLQKHVRGWSKRRKFLRMR
EAAITLQQYIRGTKTIRKTVTAAALKQGWAALVIQRYWRGYRMRQVFHLVRVATVTIQAF
RRGWIARKRFKKMVEEQKALILQKYARAWLARRRFQTLRRLVINVQLSFRVQQLRKKIEE
QNKENRGLMERLSSLANSHSHTVDRLQGLEAQLEQSINQKVSLEAREKKVKEDASQITTQ
LQKEMDALKLEKQNSEKRFDASSKEAKESFDQMKTNLQEEKEHEARFRNRIAENNIEIQR
IDHEKEVDTLKEGIKRLKEERVSLQRKIEEGGQVNAELQEQVVQLTTHVKIIPELRKNLN
NLQNQRNNMDRKMREQSEQARAKMNDITRQLLGGVVEENVLLGLTPDNSEKNCDVEDLLA
AFDGLQKATRILENHQREQKEGYETQVEGFTLKVDHLENENSKLQNLFQEKSNVNENIRQ
ELSRLSSENSVIPELKVQALELQRQKQDLEAHVEEQSRELTDKTEEITSVLQKKIQEESS
QRRHFEERSEELEELKRELEGRVDELGEENDHLKRQLQMESEAKSKLRQETSQLTADNMD
FEEQLDQKDRLIKKLQKQMKSLETSQRAKQTSAPAIPKDFLGMLEYKRKDESRLIQNIIL
DLKPKGVVVNMIPGLPAYILFMCVRHTDYLNDEVKLQTLMKGVIGAVKKVIISHHKDFEL
LSFWLSNTYQLLNCLKQYSGEEEFLKQNTPRQNKHCLQNFDLSEHRQILSDLAIQIYHQF
ISIMEKTLSPAIVPGMLEHESLQGISSMKPTGFRKRSNSIYEDSETHTISSIVQQLSVFQ
STMSQHGMEQRLIKQAVKQMFYQVGATTLNSIMLRKDMCSCRKGMQIRCNISYLEEWLKE
KELQSSNAMDTLRPLSQAAWLLQVNKSTDEDAKEITGTCTELNPVQIVKILNSYTPIDDF
EKRVTSSFVRKVQSLLQDRDRSTQLMLDSDYRFQVTFPFCPSAQALELLQVPSSLHLDFL
SRI
NT seq
5232 nt
NT seq
+upstream
nt +downstream
nt
atggctctgttggaactctacaccgagtacaacagagtgtggataccagacgcaggtcat
gtgtggaaatcagctgagattctgagagactttcatcttggggataatgttcttgacttg
cttcttgaagatggcactgagaaccactaccctgttgacccggcaaaaccacaacttcct
cctcttcgcaacccggacatcttggtgggggagaacgacctcacggctctcagctacctg
catgaacctgcagtcctgcacaaccttaaagtgcgctttgtggagtccaaaatcatctac
acctactgtggtattatactggtagctgtaaatccttacaaacagcttcatatctatgga
gatgcaatcattcatgcctactcaggccagaacatgggagacatggaccctcacatattt
gcagtggcagaggaagcatacaaacagatggccagaaaccataagaaccagtccatcatc
gtcagtggtgaatctggagccgggaaaacagtgtctgctcggtacgctatgaggtacttt
gctgttgtaagcaaatctggaagtaagactcgagttgaagacaaagttctggcatccaat
ccgataacagaggcaataggaaatgcaaagaccaccaggaatgacaacagcagccgtttt
gggaaatacacagagatcggctttgacaggcggtaccggatcattggagcgaacatgagg
acctatctcttagagaaatccagagtcgtgtttcaggcagacaacgagcgaaactaccac
atcttctaccagatgtgttcctgtgctcacctgcctgagttcaatcatctaaaactgttg
agtgcagatgagtttgcctacacccgcatgggcggtgagatcactattgaaggtgtggat
gatgggaaggacatggaggagactcggcggaccttctcactcctgggattgatggaggac
tttcagtcagatgtgttcaaagtgttggcagcagttctgcatttggggaatgtggaaatc
aaagactctggagatggaaaatcatcagttccacccagcgatccacacctggcagtcttc
tgtgagttgctgggtgtgcgtgcagagggtttggctcgctggctgtgccaccggaggatt
gttctggtggcggagacggtggtgaagccggtgcccaaagagcgggcagtaaacgccaga
gatgccctagccaagcagatctatgcccacctgtttgactgcatcatcaacaagataaac
accgcactgcaggttccaggaaagcaacacgctttcattggggttctggacatttatggg
tttgaaacatttgacaccaacagctttgaacagttttgtatcaactatgcaaatgagaag
cttcagcagcagtttaacttgcacgtgttcaagctggagcaagaggagtacatgaaagag
gacatcccatggacgttgatagatttctatgacaaccagccggtcattgacctgattgaa
gcgaagatggggatcctggacttgcttgatgaagaatgtttgtttcctcagggcacggat
cgaagctggctgcaaaagcttttcaaatatctcgatgccaaccctctgtttgagaagccc
aggttatcaaatgaggcgtttgtgattcaacactttgctgacaaggtggaatatcaatgc
agaggctttctagaaaagaacagggacactctctatgaggaactggttgacatgttgaga
gtcagtgagtttccttttgtggccaactttttccaagaggagaagcaaaaacctgtgacc
actaaagttgtccaagtgaggcccgccagacccggagtgaaaccagccaataaacagcag
agagcctcagtgggagataagttctgcagctccctctctttactgatggaaacactgaat
gccaccacccctcattatgtgcgctgcattaagcccaatgacgaaaagctcccatttgaa
tatgactcccggagggtggtgcagcagctgcgagcctgtggagtcctggaaactattcgt
atcagtgcacagagctatccctccaggtggacatacattgagttctacagccgatacagt
atcctaatgtcacatcaggaaggagacctcagtgacaagaagcagacctgcaagaacgtg
ctgcagaggttgattcaggactccaaccagtacaagtttggtcggacaaagatcttcttc
cgggctggtcaggtagcttatctggagaagctgcgcctggaccggctgagaggagcctgt
gtgaccctgcagaaacacgtccgcgggtggagcaagaggaggaagttcctgcgcatgaga
gaggcggccatcaccctgcagcagtacatccggggaacaaagacaatccgtaaaacagtg
actgctgcggctctgaagcagggctgggcagcgctggtgatccagaggtactggagaggt
taccgcatgagacaggtcttccatttagtccgtgtggccaccgtcaccatccaggccttc
agacgaggctggattgcccgtaaacgcttcaaaaagatggtggaggagcagaaagccctg
attttacagaagtatgcccgagcatggctggcacggcggcgttttcagaccctgcgtcgg
ctggtgatcaacgtccagctctccttcagggtgcagcagctcaggaagaagattgaagag
cagaacaaagagaaccgcggactgatggaaagactctcaagcttggccaactcccactct
cacaccgtggacaggctgcagggtctggaggctcaactggaacaatcaatcaaccagaaa
gtatctttggaggccagagagaagaaagtgaaagaagatgctagccagataacaacacag
cttcagaaggaaatggatgcactcaaacttgaaaagcagaactcggagaaaaggtttgac
gcttcttccaaagaagccaaagagagctttgaccaaatgaagacgaatcttcaggaagag
aaagaacatgaagcaaggtttagaaacagaattgcagagaacaacattgagatccagagg
attgaccacgagaaggaggtggacactctgaaagaggggattaagagattgaaagaggag
agagtcagcctgcagagaaagatcgaggaggggggccaggtgaacgctgaactacaggag
caggtcgtccaactcaccacacatgtcaaaatcattcccgagctacggaagaatctcaac
aacctgcagaaccagagaaataacatggaccggaagatgagagagcagtcggaacaagcc
agagctaaaatgaacgatatcacgagacaacttcttggtggtgtcgttgaagagaacgtt
cttttggggctaactccagacaactctgagaagaactgtgatgttgaagatttgctggca
gcctttgatggtctacagaaagcgaccagaatccttgaaaaccaccagagggagcagaag
gagggctatgagacccaagtggaaggctttacgttgaaagtggaccatcttgaaaatgag
aacagcaagttgcaaaacctgttccaggagaaaagtaatgtcaacgagaacattcgccaa
gaactgtccaggctcagcagcgagaactcagtgatcccggagctgaaagttcaggcttta
gagctccagaggcaaaaacaagatttggaggcccatgtggaggagcagagcagagaacta
acagacaaaactgaggagatcacaagcgtacttcaaaagaagattcaagaagagagctca
caacggaggcactttgaggagagaagtgaagagctggaggagttgaagagggagctcgaa
ggcagagtggacgagctgggagaagagaacgatcacttgaagagacagctgcagatggag
agcgaggccaagagcaaactgagacaggagacttcacagttaaccgctgacaatatggac
tttgaggagcagctcgaccagaaagacagattaataaagaagctacagaagcaaatgaaa
agccttgaaacatcacagagagcaaagcaaacgtctgcgcctgcaatccccaaagacttc
ctcggcatgttggagtacaagagaaaggatgaatccagactcattcaaaacatcattctg
gatctgaagcccaaaggtgtggtggtcaacatgatccccgggctgccggcttacatcctc
ttcatgtgcgtgcgccacaccgactacctcaacgatgaagtcaaactccagactctcatg
aaaggagtcatcggtgctgtcaaaaaagtcatcataagtcaccacaaagactttgagttg
ctgtccttttggctctccaacacgtatcagctgctcaactgtctgaagcagtacagcggg
gaggaggagttcctaaaacaaaatactcctcgccagaacaaacactgcctgcagaacttt
gatttgtctgaacacagacagattctcagcgacctggccattcagatctaccatcagttc
atctcaatcatggagaagaccctctctcctgcaattgttcctggtatgttggagcacgag
agtctacaagggatttccagcatgaagcccacgggttttagaaagcgttcgaacagcatc
tacgaggactcagagacacacaccatctcctccatcgttcagcagctcagtgtcttccaa
tccaccatgagccagcacggcatggagcagcgcctcatcaagcaggctgtcaaacaaatg
ttctaccaagtgggagcgaccaccctcaacagcatcatgctgcgcaaagacatgtgctcc
tgcaggaaggggatgcaaatcaggtgtaacatcagttacctggaggaatggctgaaggag
aaggagctgcagagctcgaatgcgatggacactctgaggccgttgtctcaggccgcctgg
ctgctgcaggtcaacaagtccaccgacgaggacgccaaggagatcaccggcacatgcact
gaactgaaccccgttcagattgtcaagattctgaactcctacacccccattgatgatttt
gagaaaagagtgacgtcgtcatttgtccgaaaagttcagtcgttactacaagatcgtgac
aggtccacgcagctgatgctggactcagattatcgtttccaggtcacgtttcctttctgc
ccgtccgcacaggccctggagctgctgcaggtccccagcagcctccacctggacttcctc
tccaggatctga
DBGET
integrated database retrieval system
