Pseudochaenichthys georgianus (South Georgia icefish): 117447869
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Entry
117447869 CDS
T09629
Symbol
sf3b3
Name
(RefSeq) splicing factor 3B subunit 3
KO
K12830
splicing factor 3B subunit 3
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Pathway
pgeo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117447869 (sf3b3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pgeo03021
]
117447869 (sf3b3)
03041 Spliceosome [BR:
pgeo03041
]
117447869 (sf3b3)
03036 Chromosome and associated proteins [BR:
pgeo03036
]
117447869 (sf3b3)
Transcription machinery [BR:
pgeo03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
117447869 (sf3b3)
Spliceosome [BR:
pgeo03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
117447869 (sf3b3)
Complex B
117447869 (sf3b3)
Complex C
U2 SnRNP specific factors
117447869 (sf3b3)
Chromosome and associated proteins [BR:
pgeo03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
117447869 (sf3b3)
TFTC complex
117447869 (sf3b3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Motif
Other DBs
NCBI-GeneID:
117447869
NCBI-ProteinID:
XP_033940715
LinkDB
All DBs
Position
6:complement(12778220..12831976)
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AA seq
1217 aa
AA seq
DB search
MFLYNITLQRATGITHAIHGNFSGTKMQEIVVSRGKIIELLRPDANTGKVHTLLTVEVFG
IVRSLMAFRLTGGTKDYIVIGSDSGRIVILEYHPSKNMFEKIHQETFGKSGCRRIVPGQF
LAVDPKGRAVMIGATEKQKLVYILNRDAAARLTISSPLEAHKANTLVYHVVGVDVGFENP
MFACLEMDYEEADSDPTGEAAANTQQTLTFYELDLGLNHVVRKYSEALEEHGNFLITVPG
GSDGPSGVLICSENYITYKNFGDQPDIRCPIPRRRNDLDDPERGMIFVCSATHKTKSMFF
FLAQTEQGDIFKVTLETDEEMVTEIRLKYFDTIPVATAMCVLKTGFLFVSSEFGNHYLYQ
IAHLGDDDEEPEFSSAMPLEEGDTFFFQPRPLKNLVLVDEQENLSPIMTCQIADLANEDT
PQLYVACGRGPRSTLRVLRHGLEVSEMAVSELPGNPNAVWTVRKHVEDEFDAYIIVSFVN
ATLVLSIGETVEEVTDSGFLGTTPTLSCSLLGEDALVQVYPDGIRHIRADKRVNEWKTPG
KKTIVRCAVNQRQVVIALTGGELVYFEMDPSGQLNEYTERKEMSADVVCMSLANVPPGEQ
RSRFLAVGLVDNTVRIISLDPSDCLQPLSMQALPAQPESLCIVEMGGVEKQDELGEKGTI
GFLYLNIGLQNGVLLRTVLDPVTGDLSDTRTRYLGSRPVKLFRVRMQGQEAVLAMSSRSW
LSYSYQSRFHLTPLSYETLEYASGFASEQCPEGIVAISTNTLRILALEKLGAVFNQVAFP
LQYTPRKFVIHPETNNLILIETDHNAYTEATKAQRKQQMAEEMVEAAGEDERELAAEMAA
AFLNENLPEAIFGAPKAGAGQWASLVRLINPIQGTTLDLVQLEQNEAAFSVAVCRFPNTG
DDWYVLVGVARDMILNPRSVSGGFIYTYRLISGGEKLEFVHKTPVEDVPLAIAPFQGRIL
VGVGKLLRIYDLGKKKLLRKCENKHVPNLVTSIHTIGQRVIVTDVSESLFWVRYRRNENQ
LIIFADDTYPRWVTTACLLDYDTMAAADKFGNISIVRLPPNTSDDVDEDPTGNKALWDRG
LLNGASQKAEVIMNYHVGETVLSIQKTTLIPGGSESMVYTTLSGGIGILVPFTSHEDHDF
FQHLEMHMRSEFPPLCGRDHLSFRSYYFPVKNVIDGDLCEQFNSMDPHKQKSVAEELDRT
PPEVSKKLEDIRTRYAF
NT seq
3654 nt
NT seq
+upstream
nt +downstream
nt
atgtttctgtacaacatcaccctgcagcgtgccactggcatcactcatgccatccatggg
aacttttcaggaaccaagatgcaggagatcgttgtttccaggggaaagatcatagaatta
ttgcggccagatgccaacacgggaaaggttcacactctgctcacagtggaggtgtttggt
atcgtcagatctctgatggccttcagactaaccggaggaaccaaagactacattgttatt
ggcagtgacagtggacgtattgtcatcctggaatatcatccatcaaaaaacatgtttgag
aagatccaccaggaaacgtttggaaagagtggctgcagacgcatcgtccccggacagttc
ctggccgtggacccaaaaggcagagctgtgatgataggagcgacagagaaacagaagctg
gtttatattctgaacagagatgcagctgcgaggctcaccatttcctctccactggaagcc
cacaaagccaacacactggtgtaccacgtagtgggagtcgacgtcggctttgaaaacccc
atgtttgcctgcctggagatggactatgaggaggctgacagtgacccgacaggagaagct
gccgccaacacgcaacagacgctcaccttttacgagctggacctcgggttgaatcacgtg
gtgcgaaagtacagtgaggctttggaagagcatggaaactttctcatcactgttcctggt
ggttcggatggtcccagtggagttctgatctgctccgaaaactacatcacctacaagaac
tttggagaccagcctgacatccgctgtcccatcccacgacgcaggaatgacctggatgac
ccggagcgcggcatgatttttgtctgctcagcaactcacaagaccaagtccatgttcttc
ttcctggcccaaactgagcagggagacatcttcaaggttacgctggaaacagatgaggaa
atggtcacagaaatccggctgaaatactttgacacaatccccgtggcaacagccatgtgt
gtcctgaagactggcttcttgtttgtgtcttcagaatttggcaaccattacctttaccag
attgctcacttgggtgacgatgacgaggagcccgagttctcctctgcaatgcccctggag
gagggagacaccttcttcttccagccccgccccctcaagaacctcgtgctggtggacgaa
caggagaacttatcccccatcatgacctgtcagattgctgatttggccaatgaagataca
ccacagttgtacgttgcctgtggacgaggaccacggtctactctgagggtccttagacat
ggactggaggtatcagagatggctgtgtctgagctgcccggtaaccctaatgctgtgtgg
acagtacgcaaacatgtagaagatgagtttgatgcctacatcatcgtgtctttcgtgaac
gctactctggttctttccatcggagagactgtagaggaagtgacagattctggattccta
ggaacaacacccactctctcctgctcgctgctcggtgaagatgccctggtgcaggtgtac
ccagacggtatccgccacatccgagcagacaagcgtgtgaacgagtggaagactcctggc
aagaaaaccattgtgcgctgcgctgtgaaccagcgacaggtcgtcattgctctcactgga
ggggagctggtctactttgagatggacccgtctggccagctgaatgagtacacagagcgt
aaggagatgtctgcagatgtggtgtgtatgagcctggctaacgtccctcctggtgagcag
cgctcgcgattcctggctgtgggactggtagacaacaccgtgcgaatcatctccctggac
ccttcggactgcctccagccgttgagtatgcaggccctgccagcccagcctgagagtctg
tgtattgttgagatgggaggagtggagaaacaggatgaactcggagaaaagggaaccatc
ggcttcctctacctcaacatagggctccagaacggcgtgctgctgaggactgttctggat
ccagtgacgggcgacctgtcagacaccagaacacgctacctggggtcccgacccgtcaag
ctcttcagagtcaggatgcaggggcaggaagctgttctggccatgtccagtcggtcctgg
ctgagctattcgtaccagtcgcgcttccatctgaccccgctgtcatacgagactctggag
tacgcctctggctttgcctctgagcaatgccctgaaggcatcgtcgccatttccaccaac
acactgagaatcttggctttggagaaattgggagcagtcttcaaccaggtggcctttcct
ttgcagtacactccgaggaagtttgtaatccacccggagaccaacaacctcattttgatc
gagaccgaccacaatgcctacaccgaggcaaccaaagcccagaggaagcaacaaatggct
gaggagatggtggaggctgctggagaagatgagagagaactggccgctgagatggctgct
gcattcctcaacgagaacctcccagaagctatttttggtgcacctaaagctggagcagga
cagtgggcctcactggtgcggctcatcaaccccatacagggaacaacactggacctggtg
cagctggaacagaacgaagctgcgttcagtgttgcagtgtgtcgcttccccaacacagga
gatgattggtatgtcctggtgggcgttgccagagacatgatcctcaaccccagatcagtg
agcggcggattcatctacacctatcggctcatcagcggaggggagaaactggagtttgtg
cacaaaacaccagtcgaggacgttcctctggctattgctccattccagggtcgaatcctg
gtgggagtgggcaaactgttgagaatctacgacctgggaaaaaagaagctgcttcgcaaa
tgtgaaaacaagcacgttcccaacctggtgaccagcatccacaccatcggccagcgtgtg
atcgtgacggacgtttcggagagcctgttctgggtccgctacagacgcaacgagaaccag
ctgatcatcttcgccgatgacacctatccccgctgggtgaccacggcctgtctgctcgac
tacgacaccatggccgccgctgacaagtttgggaacatcagtatcgtgcgccttccgccc
aacaccagcgatgatgtggatgaagaccccactgggaacaaagctttatgggacagaggc
ctccttaatggagcatcacagaaggctgaggtgattatgaactaccacgtaggagagacc
gtgttatccatccagaaaaccactctgatccccggaggctccgagtccatggtctacacc
acgttgtccggaggcatcggcattctggtcccgttcacgtcacatgaggaccatgacttc
ttccagcatttagagatgcacatgcgctcggagttccccccactgtgcggcagagaccac
ctcagcttcagatcctattacttcccagtcaagaatgtgattgatggagatctgtgtgag
cagtttaacagcatggatcctcacaagcagaaaagtgtggcagaggagctggacagaaca
ccgcccgaggtgtctaagaaactggaggacattcgtactcgctacgccttctaa
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integrated database retrieval system
