Pseudochaenichthys georgianus (South Georgia icefish): 117448173
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Entry
117448173 CDS
T09629
Symbol
ighmbp2
Name
(RefSeq) DNA-binding protein SMUBP-2 isoform X1
KO
K19036
ATP-dependent RNA/DNA helicase IGHMBP2 [EC:
5.6.2.5
5.6.2.3
]
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pgeo03009
]
117448173 (ighmbp2)
03012 Translation factors [BR:
pgeo03012
]
117448173 (ighmbp2)
Enzymes [BR:
pgeo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
117448173 (ighmbp2)
5.6.2.5 RNA 5'-3' helicase
117448173 (ighmbp2)
Ribosome biogenesis [BR:
pgeo03009
]
Eukaryotic type
Other ribosome biogenesis factors
117448173 (ighmbp2)
Translation factors [BR:
pgeo03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
117448173 (ighmbp2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_11
AAA_12
SMUBP-2_HCS1_1B
R3H
AAA_30
AAA_19
zf-AN1
Viral_helicase1
DEAD
ResIII
nSTAND3
IstB_IS21
AAA_16
AAA_22
UvrD-helicase
Flavi_DEAD
SLFN-g3_helicase
ABC_tran
Helicase_RecD
PhoH
AAA_25
AAA
DnaB_C
AAA_31
ATPase
Zot
SRP54
NPHP3_N
Motif
Other DBs
NCBI-GeneID:
117448173
NCBI-ProteinID:
XP_033941228
LinkDB
All DBs
Position
6:complement(30697680..30704270)
Genome browser
AA seq
1001 aa
AA seq
DB search
MNNIKLAMAVEQFVSKTLELLQEEREAEIEENRIWQENISLKDLQSKGVCLLKLQISSQS
TGLYGRTVVIFEPRKHLGFTSLPSNSFGPGDIVGLYDTGGCTAASQIGTGIVTRVSQTAI
SVAFDDSNDGLSFDTDGLHNLLKLANDVTYKRMKNALNTLNGYRNGPAANLIDVLFGNST
PSSQTQPNEFKFFNSNLDDSQREAVSFTLSQRELAVIHGPPGTGKTTTVVEIILQAVKQG
QKVLCCAPSNVAVDNLVERLAQCKAKVLRLGHPARLLESIQKHSLDAILAQSDSAGIIAD
IRKDMDKAFVGIKKMRERGDRVNYKREIGELRKELRTREATAIAQILKSADVVLSTNTGA
CHTGPLKYLPAEHFDWVVIDECAQALESSCWIALLRARKCILAGDYKQLPPTIKSQKAAS
KGLSLSLMERLIQMYGDLVVRMLTVQYRMNSAIMDWASKEMYQGRLTAHSSVEKHLLKDL
PGVACVEETSTPLLLIDTAGCGLSEMEVTEGQSKGNQGEVDIVELHIKALTEAGVKAKDI
AVIAPYNLQVDLLRQKLSARHPELEIKSVDGFQGREKEAVVLSLVRSNRKGAVGFLSEDR
RINVAVTRARRHIAVVCDTQTVQNHAFLKSLIDHMTQHGEVRTAFEYIQDIAPQNYTRDP
KDTKSSSSSTSTKQKVKDQPPSRTKPPQKSSTGSSANENTAGKEKHTKSSLTCLTEEEQK
KNRTAEITAQVESFLKDSNQSELQFPSSFNSHDRLLVHQIAEEMGLVHESKGEGKDRCIT
VARPLESTPAEEPPQEEEEEEKEEEEEKEEDKVQNPQKEQLSQTALDLKSLHLERMKREQ
QKREENAQQKKQQNIILPAQASKKPKAAKVKSKTKTGACGIAAAAAPDEDFDTLINAVIK
AERVCSFLRCKASVLMLGQLCLFCNRQYCLSHHIPEVHGCGDKAKSHARMRISKEGVLYA
GSGKKDKTMDPNKKAYLQRKLDSKLKDMSTQRKPKQKENES
NT seq
3006 nt
NT seq
+upstream
nt +downstream
nt
atgaataacattaagttagcaatggcggtggaacagtttgtgtcaaaaacacttgagctt
ctacaggaggaaagggaggctgaaatagaggagaacaggatatggcaggagaacatctct
ctgaaggatcttcagagtaaaggggtttgcctgctgaaattgcagataagcagtcagtcc
acaggtctgtacggtcgcacagtcgtcatcttcgagccacggaaacatttgggttttaca
tctctgccaagcaacagctttggacctggtgacatagtgggcttgtatgacactggtgga
tgcaccgcagcctcacagattggcacagggatagtgacaagggtcagccaaactgcgata
agtgtggcctttgatgattctaacgatggcctcagcttcgatacagatggtcttcacaac
ctcttaaaattggcaaatgatgttacctacaaacgaatgaaaaatgccttgaatacatta
aatggatacagaaatggaccagcggccaatctgatagacgttctctttggaaactcaaca
ccttcttcacaaacacagccaaacgagtttaaattctttaactccaacctggatgattcc
cagagagaagctgtgtcctttactctgtctcagagagagttagctgtgattcatggacca
ccaggcactgggaaaaccaccactgtggtcgagatcatcctgcaagcagtcaaacaaggc
caaaaggtcttgtgctgtgctccatccaacgtggcggtggataatttagtagagaggtta
gcccaatgcaaggctaaagtcctgaggctgggtcaccctgccagactgctggagtccata
cagaaacactcactggacgccatcctcgctcagagcgacagtgcaggcatcattgcagac
atccgtaaagacatggacaaagcatttgtgggaataaagaagatgcgtgaaagaggagac
cgggtgaactacaaaagggaaataggggagctaagaaaagagctgaggaccagggaggca
acagccatcgcccagatcctcaaaagtgctgatgttgtgttatcaaccaacacaggtgct
tgtcacactggtccgctgaagtacctgccagcggagcactttgattgggtggtgatagac
gagtgcgctcaggcgctggagagcagctgctggatcgccctgctccgagcgcgcaagtgc
atcctggctggagactacaagcagctaccaccgaccatcaaatcacaaaaggctgcatca
aaaggcctgtccctcagcctcatggagagactcatccagatgtacggggacttggtggtc
cgcatgctaacagtccagtaccgcatgaacagtgccatcatggactgggcctccaaagag
atgtaccagggacgacttacagctcacagctctgtagagaaacacctgttaaaagatcta
cctggagtcgcctgtgttgaagagaccagcacgccgctccttcttatcgacacagcaggc
tgcggtctgagcgagatggaggtcactgaggggcagtccaaaggcaatcaaggtgaggtc
gacatcgttgaactgcacataaaggccttgactgaagctggggttaaagctaaagacatc
gctgttatcgctccgtacaatctacaggtggatcttctgcgtcagaagctttctgcgagg
catcctgagctggagataaagtcagtggatggatttcagggcagagagaaggaggccgtg
gtgttgtccttagttcggtccaacagaaaaggggcagttgggtttctgtcagaggaccga
aggattaacgtggctgtaacgcgtgcgaggcgtcacatcgctgttgtgtgcgacacgcag
accgtccagaatcacgctttcctgaagtccctgatcgatcacatgactcaacatggtgag
gtcagaacagcatttgagtacatccaagacatcgcgccacaaaactacacccgcgacccc
aaagacacaaagtcttccagcagctccacgtccaccaaacagaaggtcaaagatcagcct
cccagcaggacgaagccaccgcagaagagttcaaccggaagcagcgctaatgaaaatact
gcagggaaagagaagcacacaaagtccagcttaacatgcctgacagaggaagagcagaag
aagaacagaactgctgagatcacggcgcaggtggagagctttctgaaggactcaaatcag
agtgaactacagttcccatcatcctttaactctcatgaccgcctgctggttcaccagatc
gccgaggagatgggcctcgtgcatgagagtaaaggggaggggaaggacaggtgcatcact
gtcgccagacccctggagtcaacacccgctgaggagccaccacaggaagaagaagaagaa
gagaaggaagaggaagaagagaaggaagaagacaaagtccagaatccccagaaagagcag
ctttctcaaaccgcattagacttaaagagtttacatttggagcgaatgaagagggagcag
cagaagagggaagaaaacgctcaacaaaagaagcaacaaaacatcatcctgccagctcag
gcctcgaagaaaccaaaggctgctaaagtaaagagtaaaacgaagacgggcgcctgcggc
atcgctgctgccgccgctccagacgaagacttcgacacactcatcaacgccgtcataaag
gctgagcgtgtgtgcagtttcctgaggtgcaaagcttctgtgctgatgctcggacagctc
tgcctgttctgcaacaggcagtactgtctcagtcatcatataccagaggttcacggctgc
ggagataaagccaagtctcacgctcgcatgagaataagcaaggagggcgttctttacgcc
gggagcgggaagaaggataaaaccatggaccccaacaagaaagcctatctgcagaggaaa
ctggattctaaactgaaagatatgtcaacacagaggaagccaaaacagaaagaaaatgaa
agttaa
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