Pseudochaenichthys georgianus (South Georgia icefish): 117448258
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Entry
117448258 CDS
T09629
Symbol
caprin1b
Name
(RefSeq) caprin-1b
KO
K18743
caprin-1
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pgeo03019
]
117448258 (caprin1b)
Messenger RNA biogenesis [BR:
pgeo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Other mRNA localization factors
117448258 (caprin1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Caprin-1_C
Caprin-1_dimer
zf-C4H2
Reticulon
Motif
Other DBs
NCBI-GeneID:
117448258
NCBI-ProteinID:
XP_033941354
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All DBs
Position
6:complement(32164627..32175160)
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AA seq
685 aa
AA seq
DB search
MPSAINANGTMQSASPDVGSAPGSMGNFAGQPEVMKQVLCVLDKKVRNMEKKKSKLDDYQ
VRKDKGENLNQDQLEALSKFQEIMHNLEFGRDLQKTFMTLGQDIQKAVKKTARREQLQRE
EAEQKRLKTILELQFLLDRLGEDAVRQDLKQGVSGSLLTDADLASFDEFYKLVGPDRDQN
IRLVDQYEEASVHLWDLLDGRDKAVVGTTYKALRETLDQVLLSGYFDRVPSHQNGMCEEE
EEEEEEEEEVAASAAASAVAESSEAEEQTADPETEIIEEFTEPIAVETTEFINRQFIPDG
TYSSSEKEQGDEWTTETEAAAALQQQQPPPMQPAVLPVAMETHPLNLASPVPPNDPLVRK
QVVKDLMAQMQGTYNFMQDSMLEFDGQPIDPAIVSAQPMKPTQNMDLPQMVCPPVHPESR
LSQPNSVPVQPEPTQVPIVSPTPPPMYQSSHTPDPRPPTDTIDPIQTSMSLSSEQPPPPT
ALPSASQTQVFQPVSKAPHSSGINVNAAPFQSMQTVFNLNAPVPPANETEALIQASQYQN
SYNPAFSSPPQHPTEPTEMQAEQLQTVGAFHSQDQSAGQQQGPGFTRQGQSFYNSRGMSR
GGPRNARGMINGYRGSSNGFRGGYDGYRPPFANTQNSGYGQTQFNTPRDYSNGNYQREGY
QPNYKRGAGQGPRGVSRGSTQAIRS
NT seq
2058 nt
NT seq
+upstream
nt +downstream
nt
atgccctcagcgattaatgcaaacgggaccatgcagtctgccagcccagatgtgggatcc
gctccagggtcaatgggtaattttgctggacagcctgaagtcatgaagcaagtgctttgt
gtactcgacaagaaggtccgcaacatggagaagaaaaagagtaaactggacgactatcaa
gtcaggaaggataaaggggaaaatctgaatcaggaccagctggaggccctctccaaattc
caggaaatcatgcataacttagaattcggccgagatttgcagaagacgttcatgacactg
ggacaagatatccagaaggcggtgaaaaagactgcgcggagggaacagcttcagcgggag
gaggccgagcagaagcggctgaagacaattctggagctgcagttcttgctggaccggctg
ggagaggacgcggtgcggcaggacctgaagcagggcgtcagcggatctctgctgacggat
gcagacctcgcatcctttgatgagttctataaactggtggggccagaccgtgaccaaaac
atcaggttggttgaccagtacgaagaagcatcggtgcacctctgggatctgctggacggg
agagacaaggctgtggttggaacaacgtacaaggctctgagagagactttggaccaggtt
ctgctcagtgggtactttgaccgggttccatctcaccaaaacggcatgtgtgaagaggag
gaggaggaggaagaggaggaggaggaagtggcagcctcggcagcagcttcagccgtagct
gaatcgtcagaagcagaagagcagactgctgatccagaaacagaaataattgaggagttc
acagagcccattgctgtggagacgacagagttcataaacagacagttcattcccgatggc
acatacagcagcagtgagaaggagcagggggacgagtggaccacggaaacagaggcagcc
gctgcactgcagcagcaacagccgccgcctatgcagcctgccgttttacctgttgctatg
gagacccaccccttgaatttagcgtctcctgtgccgccaaacgaccccttggtcaggaag
caggtggtaaaggacctaatggcacagatgcagggaacgtacaacttcatgcaggactcc
atgctggagtttgacggacagcccattgaccccgccattgtctcagcacagcccatgaaa
cccactcagaacatggacttaccacagatggtgtgtcctccagttcacccagagtcccgg
ctatcgcaacccaactctgttcctgtccagcctgagcccacacaagttcctattgtttcc
ccaactccgccccccatgtatcagagttcacacacgccagatcctcgacccccaacagat
accatcgaccccatccagacctccatgtcgttgtcgtcggagcagcctccgccccccaca
gctctcccgtctgcctctcaaacacaagttttccagccggtctccaaagctccgcacagc
agtggcatcaacgtgaacgcagcaccattccagtcaatgcagacagtgttcaacctcaat
gccccagtcccgccagctaatgagacagaggctttgatccaggccagccaataccagaac
agctacaacccagccttcagcagcccgccgcagcatcctacggagccgacagagatgcag
gcagagcagctgcagactgttggtgccttccattcccaggaccagtcagcaggccagcag
cagggcccgggcttcaccaggcagggccagtccttctacaacagcagaggcatgtcccgc
ggcggacctcgcaatgccagggggatgatcaacggatacagaggctcctcaaacggattc
agaggtggctatgatggatatcgtcctcctttcgccaatactcaaaactctggttatgga
cagactcagttcaacacacctcgggattactcaaacgggaattatcagagggagggttac
caaccgaactacaagcgcggcgcgggtcagggacccagaggagtgtcgagaggcagcact
caggcgatacgatcctga
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