Pseudochaenichthys georgianus (South Georgia icefish): 117448283
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Entry
117448283 CDS
T09629
Name
(RefSeq) cyclic nucleotide-gated channel beta-1-like
KO
K04952
cyclic nucleotide gated channel beta 1
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Pathway
pgeo04744
Phototransduction
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09150 Organismal Systems
09157 Sensory system
04744 Phototransduction
117448283
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
pgeo04040
]
117448283
Ion channels [BR:
pgeo04040
]
Voltage-gated cation channels
Cyclic nucleotide-gated channel (CNG)
117448283
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
cNMP_binding
Motif
Other DBs
NCBI-GeneID:
117448283
NCBI-ProteinID:
XP_071059500
LinkDB
All DBs
Position
6:13700920..13731959
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AA seq
1534 aa
AA seq
DB search
MFNWVVKVVPQLPSSEGTDNGVKTSAPRVKSPPQKDVEEDSQDSQNHTGVLGWLSNGFVS
AMPQPTGSPRLSRSDSERMGESEERSGVMGWVAQGLTKVLPQPDDKYKEIEDIQEETEIY
EAATMPDFDPLPHIPVVEMESEDEEEPETPQFPPNVVNWIKQMVPQPLILPPGAVPLEPS
TKSSRSSLDKILSPPSESLSGISLDTDGKAPSMVGWFMAGLGLKIPQLAVQTKDDAQGVA
EVLKKASSKLRPDMVLEDVDSDNEAPQKCKDPATVAAPNPSVTTSSTNTQQTQSEPEPEP
DPAPSDSGTKSQEDAETQTGRWTPFIENIKKEAEGVAMASMEQRLLQERSEMVLIAEEVA
RTAAENAIRQMASESIKLSLGSQDLLDEEDEEPDAELQDQQEEENEVDHQGTQKEQSISE
EAEEPTIKEPEPKEQAKPQWSSPSPPPKPEPVKIQEPESEPESEPESESEPESESEPESE
PEPEPKTETETRETNSGAEPITQQPQRAKEDDQSNNADNAAEKEEATEDSCGAPVSCDAF
KSCLMRLPQTFECLGNINAFFKENGISIPKIPPMPNLPTQLSDVTNYLPSLPPELRQELS
QIRLTQVPRNIAQTLTELLPKNSDGSVGPDLSSISQGISNIPQKLSQIPTRVQQYFLNVQ
NRLNSLITLELPNVPSYPRLPPIVSPPSKQLNSVSRQLSGLSNPAFFIEDDEAIRPAESS
SLSLRPAVNVEDVDSDHERGGEGGGGEGQSHIPQILGPQDPKITTLTVPVTPSGCRQSKG
DKDSGRNRRSIWTKISTLHSQSEDDDEEGSTHIRAWPSQSSLHSSEDIMRERPASSASQT
STVVNERLQELVRMFKDRTEKAKEKLIDLDSSDEDSIDPSPPQTSTAQPVVGGEQEEEAG
PSGGRGGGGVESGVEEQQSGRCCKVKAPRWIFACVHYRFPASIDPFTNLMYVLWMFLVSF
AWNWNAWFIPVRWAFPYQTPDNIYYWLLTDYLCDLIYILDMTIFQPRLQFVRGGDIVCDK
KEMRKNYMKTKRFKFDLASLVPLEIFYFKTGINPLLRLPRLLKINSFFEFNERLEAILTK
AYIYRVIRTTTYLLYCLHCNACLYYWGSAYTGLGSTQWVYNGKGNSYIRCYYFAVKTLIT
IGGLPDPTTLFEIVFQLINYFVGVFAFSIMIGQMRDVVGAATSGQTYYRTCVDNTIKYMS
SYRIPKDVQNRVKTWYNYTWQSQGMLDEQELLTQLPDKMRLDIAIDVNYSIVSKVALFQG
CDRQMIFDMLKSLRSVVYLPGDYVCKKGEVGREMYIIKAGEVQVVGGPDGRTVFVTLRAG
SVFGEISLLAVGGGNRRTANVIAHGFANLFILDKKDLNEILVHYPESKKLLRKKARKMLT
KGKKPEPKEEPKGPPQAPAAPVRPETPKLLRAALEMAERSTGLKGALAKVKKKTNKSSVS
LQPSVCSSLPPPSPSCSFGPDRDEDTPSPLSTSSATFRSASRCCNNNNNNNSAMPRSVSQ
CHGDSEEMLTMDQGEESVSETEGNEGGKRKEKKL
NT seq
4605 nt
NT seq
+upstream
nt +downstream
nt
atgtttaactgggtggtgaaagtggttccccaactcccgtcatctgaagggacggataac
ggtgtgaaaacatctgctcccagagtgaagagccctccacagaaagacgtagaagaggat
tcacaggacagccagaaccacactggagttttaggctggctgtcaaatggcttcgtcagc
gccatgcctcagccgaccggctcccctcgactcagccggtccgactctgaaaggatgggc
gaaagtgaagaaaggtctggagtgatgggctgggtcgctcagggcctgacaaaggtgttg
cctcagcctgatgacaagtataaagagattgaggacattcaggaggaaactgagatctac
gaggcagcaacaatgccagattttgatcccctccctcacattcctgtggtggagatggag
tcagaggatgaagaagagcctgagactcctcaatttcctcctaacgttgtgaactggata
aagcaaatggtccctcaaccccttatactgccccctggtgccgtacccttagaaccatca
accaagtcctcccgctcttctctggacaaaatcttgtctccaccatctgagtctctcagt
ggaatctcattggatactgatggcaaggccccaagtatggttggctggttcatggcaggc
ctgggcctgaagatccctcagcttgccgttcaaaccaaagatgatgctcagggtgtagct
gaagttttaaagaaagcttcatccaaactcaggcctgacatggtactagaagacgtggac
tcagacaacgaggcaccgcagaaatgtaaagatccggccacagtcgcagcccctaaccca
tcagtgactacatcatcaacaaacacacagcagacacagtccgagcccgagccagagcct
gatccagcaccttcagacagcgggacaaaatctcaagaagatgctgagacccagacgggc
cgctggacgccgttcattgaaaacatcaagaaggaggccgaaggtgtagctatggcaagc
atggagcaacgtctgctgcaggagcgctcagagatggtgcttatagctgaggaggtggca
aggaccgcagctgagaatgccattagacagatggccagtgagtccatcaaactctccctg
gggagtcaagacctcttggatgaggaggatgaggagcctgatgctgagttgcaagatcaa
caagaagaggagaacgaagtggaccatcaaggaacacaaaaggagcagagcatttctgag
gaggcagaggaaccgaccattaaggaaccagagccaaaggagcaagcgaagccacagtgg
tcgtccccctccccacctccaaaacctgaaccagttaagatccaagagccagagtcggag
ccagagtcggagccggagtcggagtcggagccagagtcggagtcggagccagagtcggag
ccagaaccagaaccaaagacagagacagagacccgggaaaccaactcaggagctgagccc
atcacccagcagccgcagagggcaaaggaagacgatcaaagcaacaacgctgacaacgct
gctgaaaaagaggaagctactgaggacagctgtggtgctccagtcagctgtgatgcattt
aagagctgcctgatgcgccttcctcaaaccttcgagtgcctgggtaacatcaacgcgttc
ttcaaagagaacggcatctccattcccaaaataccccccatgcctaatctacccacccag
ctctctgacgttaccaactacttaccctccctcccccctgagttgcgccaagagctctcc
cagatccgactcacccaggtcccccgaaatatcgcccagactctgaccgagcttttgccc
aaaaactctgacggttcagtgggcccagatctgtccagtatttcccagggcatttcaaac
atcccgcagaagctctcccagattcccacgcgggtgcagcagtacttcctcaacgtccag
aaccgcctcaacagccttatcaccctcgagttgcccaatgtgccatcctacccgcgcctg
ccgccaatcgtcagccccccctcaaagcagctcaactcagtgtcccgccagctctcaggt
ctctctaacccggcgttcttcatagaagacgacgaagcaataagacctgcagagagctct
agcctcagccttcggccagctgtcaatgtagaagatgtcgactccgaccatgagagagga
ggtgaaggaggaggtggggagggtcagagccatatcccccaaatcctcggcccccaggac
cccaaaatcacaaccctcactgtccctgtgaccccttcaggatgtcgccaaagcaaagga
gacaaagacagtgggaggaatcgtaggagtatatggactaagattagtacccttcactct
caaagtgaagatgatgatgaagaaggaagcacccacatcagagcctggcccagccagtcc
agcctgcacagctcagaagacataatgagagagcggccagcatcgtcagccagtcagacc
agtacggtggtgaacgagcgtctccaggagctggtccggatgtttaaagacagaacggag
aaggcgaaggagaaactcatagacctggacagctctgatgaagacagcatcgacccctct
cctcctcagacttcgactgctcagcctgtggtcggaggagagcaggaggaagaggcaggc
ccctcaggaggaagaggaggaggaggagtggagagtggagtggaggagcagcagtctggc
cgctgctgcaaggtgaaagctcctcggtggatattcgcgtgtgtgcactaccgcttccct
gccagcatcgaccctttcaccaacttgatgtacgtgctgtggatgtttttggtctctttt
gcgtggaactggaacgcttggttcatcccggtgcgctgggccttcccctaccagaccccc
gacaacatttactactggctgctgaccgactacctgtgtgacctcatctacatcctggac
atgaccatcttccagccgcgcctgcagttcgtccgtggaggagacatagtgtgtgacaaa
aaagagatgagaaagaattacatgaaaaccaaacgcttcaagtttgacttagccagcctt
gttcccctggagatcttctattttaaaacgggcatcaaccctctgcttcgtttaccccgg
ttgctgaagataaactccttctttgagttcaacgagcgtctagaggccatcttgaccaaa
gcctacatctacagggtgatccgcaccaccacctaccttctctactgtctccactgtaat
gcctgcctgtactactggggctctgcctacacagggctgggctccacacagtgggtgtac
aacggcaaaggcaacagttacattcgctgttactactttgctgtgaagaccctgatcacc
attggtggtctgccggaccccaccaccctgttcgagattgtctttcaactcatcaactac
tttgttggagtctttgccttctcaatcatgattgggcagatgcgggatgtggtcggtgca
gccacttcaggtcagacttactaccgcacatgtgtggacaacaccattaaatacatgtcc
tcatatcgcatccccaaagacgtgcagaaccgtgtcaaaacctggtacaactacacctgg
caatcacaaggcatgctggatgagcaggagctgctgactcagctgccagataaaatgcgt
ctggacatcgctatagatgtcaactactccatcgtcagcaaagtcgctctttttcagggt
tgtgacagacagatgatcttcgacatgctgaaaagccttcgctcagttgtctacctgcct
ggggattatgtctgcaaaaagggggaggtgggtcgtgagatgtacatcataaaggcgggg
gaggtgcaggtggtcgggggaccggatggaaggaccgtgtttgtcactctcagagcggga
tcagtctttggggagatcagtttgcttgcagtgggtgggggtaaccggcgcacagcaaat
gttatcgctcatggatttgccaacctcttcatcctggacaagaaagacctgaatgagatc
ctggtgcactacccagagtccaagaaactgctccgcaagaaggccaggaagatgcttacc
aagggaaagaaacctgagcccaaagaagagcctaaaggtccccctcaggccccggcagcc
cctgtaagaccggaaacccccaaactgctgagagcagccctggagatggcagagagatcc
acaggacttaaaggggctctggctaaagtcaaaaagaagaccaacaagtccagtgtctca
ttacagccctccgtctgctcctccctgcctcctccatctccctcctgcagctttggccct
gacagagacgaggacacaccgtcacctctctccactagctctgccacatttcgctctgcc
tcccgttgctgcaacaacaacaacaacaacaactctgcgatgcctcgctctgtgtcacag
tgccacggcgattcggaggaaatgctcacaatggaccaaggagaggagagtgtgagcgaa
actgaagggaacgagggtgggaagaggaaagaaaaaaagttgtga
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