Pseudochaenichthys georgianus (South Georgia icefish): 117448334
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Entry
117448334 CDS
T09629
Symbol
tdrd12
Name
(RefSeq) putative ATP-dependent RNA helicase TDRD12
KO
K18409
ATP-dependent RNA helicase TDRD12 [EC:
5.6.2.5
]
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pgeo03036
]
117448334 (tdrd12)
Enzymes [BR:
pgeo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.5 RNA 5'-3' helicase
117448334 (tdrd12)
Chromosome and associated proteins [BR:
pgeo03036
]
Eukaryotic type
Gene silencing
piRNA pathway
117448334 (tdrd12)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TUDOR
Helicase_C
CS
Motif
Other DBs
NCBI-GeneID:
117448334
NCBI-ProteinID:
XP_071059495
LinkDB
All DBs
Position
6:45075070..45139464
Genome browser
AA seq
1427 aa
AA seq
DB search
MLEISIVKVESPSCLWGRAGRGGEADQYDGLLAEMNLFYHDVTQDLRKLTPTSLEEGQVC
VVYWAVIKSWCRVLVESIITDSVSCQARCLLVDHGERLVVPSDQIRIAMQNFLQLPFWVR
RFHLAGIKPTTLRVCVNEIKAGLIASTRWDSSSTLYMHSLLQASTRTEAVLLESEADSTS
IELYLTVGSIKICLNDDLVAKKFAYYSRESADSREMDEEDQLPVMLSSSILTQTVSSKPK
SPIAIASGLTAPQVSSSAHGVSVSPLDNSQASSPLTSLRLQSQQHELQPPEEGSGSKVTE
EHLSEKGPDAAAAPAESDSSEDTDSSLAAALTKDLSLFRFLKFLNPGSIFQQASPTVSEH
EEQKESPPEETTAASSTEKEVLTPSHCEPETLHKHPLTSMSERSGAEGLCESSQVEDEGT
SRWRSEEKRWKSETDWACSRLLEWLNPEPVNPASETAHDAFVPSDPRRSGILVHSFLPVQ
PCSSLDDAPITDSLRWVLKKRHRSVLTPAERYSWPSVARGCNTVIISPDAERPLSYIAPL
LTHMLLNSIYTALTASAGPMAVLLCPGWEKVMVMMELLEEMKLKAVLHPYTLLLGVGKDE
AKAVRIPKNCLLLVTTPFSLVRLLSVHCFLFLRLYHLVLDEADRLFALAPDQMATILQHF
QKVTSSEEKTSCPQQLVAVAKRWTNHIEALLANHMPYPCIVMAIPEEAALYGNVQQIIRM
TVENDKISVLLDSLDFNSDVGQKTLIVAKSAQEVEDVFKAVSNKSAFCLKTHEGLTHQFD
FVVQQWRKDIGPGTHVILVTSSECLKCLGIRDATCVVHYGFPTSPKVFGSRLFCMAEHFR
NLSDRDQTGSPRLTRSVLLISERNACHVVGVLRYLERANAPLPPELLDFVRGVNTAREEQ
KTHQPLCGYVKSYGVCRDSSVCPDRHTFVSELDQSVLPASGVIEVVPLYIKTASVFYGRI
VRKEDGGFQNMASEMEDFYADKKPGVEDILEGGLFAVQEDNFYHRVKVLSVPDRGDRLFF
TVLVRFIDVGKEKEVKSHQILKLPERFHSLHGQAVEIIVCRVKPVDAETDWHPKVTRAIS
QKIRGLQHRAKAVFSLGNTVFVDPMVRMTQVPGMKTVINEYTVQSEILSSGMAVSNPEHL
ELLKALCISGSGNGSVCLEVRIKADQEALAEAVRAAELADLPQLEPCEPLSPDSSTIQSL
VPVTPVPPVLDLHLAPAGDQRPLMVSQSAAGQRNTHSADLRIRIEDGELHPKISKSVLME
CRQNGVSTGEDESSSQLLISSNETRCGDAVKSFHPLARWYQTSDSLIVTMKLKEPQNQSC
HFFQDRVVYTGRVNERTYRADLQLHANIAPDRCCWEMKSNEPVLKLFKQQPGHWEKLLRN
KNIFVSYDVEHIEFENEDRTPNGVCFQENMGGNNNCYVVSESGSESD
NT seq
4284 nt
NT seq
+upstream
nt +downstream
nt
atgctggaaatttcaattgtaaaggttgaaagtccgtcgtgcctttggggccgggcgggt
cggggcggagaagcggatcaatacgacggtctgctggcagagatgaacctcttctaccac
gacgtgacccaggacctacgcaagctgacgcccacatcgttagaggagggacaggtgtgt
gtggtgtactgggcggtgataaagtcgtggtgtcgggtgctggttgagtccatcatcacg
gactcagtttcctgtcaggctcgatgcctcctggtggaccacggagagagactcgtcgtc
ccctcagaccagatccggatcgctatgcagaacttcctccagctgcctttctgggtgagg
aggttccacctggcgggaatcaaaccaacaaccctgcgagtttgcgtcaacgagataaag
gcgggactcattgcatccactcggtgggacagctcttctactctctacatgcacagcctg
ctgcaagcttccactcggactgaggccgtgttgcttgaatccgaggccgactccacctcc
atagagctctacctgactgtaggaagcatcaagatctgtttgaacgacgatctggtggcc
aagaagtttgcgtattacagccgagagtcagctgacagcagagagatggacgaggaggac
cagcttcctgtcatgttgtcctccagcatcttgacccagactgtctcaagcaagcctaag
tctcctattgctattgcttcaggtctgactgcgcctcaggtcagcagctctgctcacggt
gtttccgtcagtcctctggataacagccaagcatcctcaccgctgacctcgctgcggctt
cagagccaacaacatgagctgcagccccctgaagaaggcagcgggtcaaaggtcacagag
gaacatctgtcagagaaaggtccggacgctgctgctgctcctgcagagagtgactcgtcg
gaggacacagactcgtctctggctgcagctctgaccaaagatctcagtctgttcaggttc
ctcaagtttctgaatcctggcagcatcttccagcaggcgtctcccactgtgagtgagcat
gaagagcaaaaagaaagtccacctgaagagacgactgcagcttccagcacagaaaaggaa
gtattaaccccttcacactgtgagcctgagactctgcacaagcacccattgaccagcatg
agtgagagaagtggagctgaaggtctttgtgagagcagtcaggttgaagacgaaggaaca
agcaggtggagatcggaggagaaaaggtggaagagtgaaacggactgggcttgttcgcgc
cttttggagtggttgaaccctgagcccgtgaaccctgcatctgagacggcacacgacgcg
tttgttcccagtgatcccaggaggagtgggatcctggtgcactccttcctcccagtgcag
ccctgcagcagcctggacgacgcccccatcacagactctctccgctgggttttgaagaag
aggcatcgcagcgttttgactccagcggagcgctacagctggccctccgtggctcgaggc
tgcaacaccgtcatcatctcgcccgacgcagagcggccgctcagctacatcgctccgctg
ctcacacacatgctgctcaactccatctacaccgccctcaccgccagcgcagggcccatg
gcggtgctgctgtgtccgggctgggagaaagtgatggtgatgatggagcttctggaggag
atgaagctcaaagccgttctccacccctacactttgctgctgggcgtcgggaaagacgag
gcaaaggccgtcaggatccccaaaaactgcctgctgctggtcaccacccccttcagtttg
gtgcgtctgctgtccgtccactgtttcctgttcctgcgtctttaccacctggtgctggac
gaggccgaccggctcttcgctcttgctccagatcagatggcgaccattttgcagcatttc
cagaaagtgacctccagcgaggagaagacttcctgtccgcagcagctcgtcgccgtggca
aagagatggaccaatcacattgaggctctgttagccaatcacatgccgtacccgtgcatc
gtcatggcgatccccgaagaggctgctctctatggcaacgttcagcagatcatccgcatg
actgtggagaacgataagatctcggtgctgctcgattctttggatttcaactccgacgtc
ggccagaagacgctgatcgtagccaaatctgctcaggaggtggaagacgtgttcaaggcc
gtgagcaacaagtcagcgttctgcctcaaaacccacgaggggttaacgcaccagtttgac
tttgtggtccagcagtggaggaaagacatcggccccgggactcacgttattctggtaacc
tccagcgagtgtctgaagtgtttggggatcagagacgccacgtgtgtcgtccactacggc
ttccccacgtcccccaaagtgttcggcagccggctcttctgtatggccgaacacttcagg
aacctttcagaccgggatcagacaggaagtcctcgcctcacccgctcggtcttgttgatt
tcagagaggaacgcctgtcacgtggtcggggttctgcggtatctggaacgcgccaacgcc
cccctgccccccgagctgctggacttcgttcggggcgtcaacacggcccgtgaggagcag
aagacccaccaacctctctgtggatacgtcaagagctacggggtctgcagagacagcagt
gtgtgtcccgatcgccacaccttcgtctccgagctggatcagtctgtgcttcctgcctcc
ggagtcatagaagtggttcctctctacattaagacggcgtccgtgttttacggccgtatc
gtcaggaaggaggacggaggttttcagaacatggcgtcggagatggaggatttctacgcc
gacaagaagcccggagtggaggacattctggagggaggattattcgctgtgcaggaggac
aacttttaccacagagtgaaggtcctgtccgtccccgacagaggagaccggctgttcttc
acagtgcttgtccgattcatcgacgtggggaaggagaaggaagtgaagtcccatcagatc
ctgaagctcccggagaggtttcactctctgcacggccaggccgtggagatcatcgtctgc
cgcgtcaaaccagtggacgctgagaccgactggcacccaaaggtcaccagagccatcagc
cagaagatccgaggtcttcagcatcgagccaaagccgtcttcagtctgggaaacacggtg
ttcgttgatcccatggtccgtatgacgcaggtcccgggtatgaaaactgtgatcaatgag
tacaccgttcagtcggagatcctgagctcagggatggccgtcagtaaccccgaacatctg
gagctgctgaaggcgctgtgcatctctgggtctggaaatggttcggtgtgtctggaggtc
cggatcaaagcggaccaggaagctttggctgaagccgtcagagcagccgagctcgctgac
ctccctcagctcgagccctgtgagcctctcagtccagattcttccacgatccagtccctg
gtcccagtaacaccagtaccaccagtattggacctccacctggctccggcgggtgatcag
agacccctgatggtcagccagtcagctgctggacagagaaacacacattcagctgatctg
aggataaggatcgaagatggagaacttcaccccaagatcagcaagtctgtcctgatggag
tgcaggcagaatggtgtgtctacaggtgaggatgagagcagcagccagctgctcatcagc
agtaatgagacgcgctgtggtgacgccgttaaaagtttccaccctctggcccgctggtac
cagacgtccgactcattgatcgtgacgatgaaactgaaggagccgcagaaccagagctgc
cacttcttccaggacagagtcgtgtacactggcagagtgaacgagcgcacctacagagcc
gacctgcagcttcacgccaacatcgctccggaccgatgctgctgggaaatgaagtccaac
gagccggtcctcaaactgttcaaacaacagccgggacactgggagaaactcctcaggaac
aagaatatctttgtgagttacgacgtggagcacattgaatttgagaatgaagacagaacc
ccaaacggtgtgtgtttccaggaaaacatgggggggaacaacaactgctacgtggtgtcg
gagagcggcagtgagagcgactaa
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