Pseudochaenichthys georgianus (South Georgia icefish): 117448393
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Entry
117448393 CDS
T09629
Symbol
cnot1
Name
(RefSeq) LOW QUALITY PROTEIN: CCR4-NOT transcription complex subunit 1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Pathway
pgeo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117448393 (cnot1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pgeo03019
]
117448393 (cnot1)
Messenger RNA biogenesis [BR:
pgeo03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
117448393 (cnot1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
117448393 (cnot1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
117448393
NCBI-ProteinID:
XP_033941568
LinkDB
All DBs
Position
6:complement(11281686..11307209)
Genome browser
AA seq
2400 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECVSLISKPNVIATLCYAVDNPLHYQKSLKPSAHLFTQLSKVLK
LSKVQEVIFGLALLNSSNADLRGFASQFIKQKLPDLLRSYVDADLGGNQEGGFQDIAIEV
LHLLLSHLLFGQKGASGLGQEQIDAFLKTLCRDFPQERCPVVLAPLLYPEKRDILMDRIL
PDSGELAKTMMESSLAEFMQEVGYGFCASLDECRNIIVQYGVREVTASQVARVLGMMART
HSGLTDGIPLQSISAPGSGIWSDGKDKNDGSQAHTWNVEVLIDVVKEVNPNLNFKEVTYE
LDHAGFIIRDSKGLHIVVYGIQRGLGMETFPVDLIYRPWKHAEGQLSFIQHSLMSPEVFS
FADYPCHTVAIDILKAPPEDDNREIATWKSLDLVESLLRLSEVGQYEQVKQLFSFPIKHC
PDMLVLALLQISTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
SMAEWYMRGEQYDQAKLSRILDVAQDLKSLSMLLNGTPFAFVIDLAALASRREYLKLDKW
LTDKIREHGEPFIQACVTFLKRRCPSIMGGLAPDKDQPKSAQLPPETLATMLACLQSCAG
SVSQELSETILTMVANCSNVMNKARQPPPGVMPKGRAPSTSSLDAISPVQMDSLSGMGSL
NLGGTTTSHTQSMQGFPTSLSSAFSNPQSPAKAFPPLTNPNPSTPFGGIGSIGSLSSQLP
GMDSGPLGTGIGSSIGSSLGMPTVNTDPFGTRKMSTPGLNPPTFQQTDLSQVWPEANQHF
SKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSTIKREREVFNCMLRNLFEEYR
FFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFGSKMYYFGIAALDR
FKNRLKDYPQYCQHLASIAHFLQFPHHLQEYIEYGQQSRDPPVKMQGSITTPGSLALAQV
QSQQPGVPKAPQPGQPSTLVTTTTTTTTVAKTPTITRPTPSTFKKDVPPSINTTNIDTLL
VATDQTERIVEPPENVQEKIAFIFNNLSQSNMTQKVEELKETVKDEFMPWVSQYLVMKRV
SIEPNFHGLYSNFLDTLKNPEFVKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNLGHWL
GMITLAKNKPILYTDLEVKSLLLEAYVKGQQELLYVVPFVAKVLESSLRSMVFRPQNPWT
MAIMNVLAELHQEHDLKLNLKFEIEVLCKNLSLDINDLKPGTLLKDKDKLKSLEEQLSAP
KKEAKAPEEMLPVSTGGFLDFNQMPVLRPTGDFVPFAAPPSTPAVTTTPCTTTGPPTPQF
SYHDINVYALAGLAPHININVNISLLQAHPQLKQCVRQSVERAVQELVHPVVDRSIKIAM
TTCEQIIRKDFALDSEESRMRVAAHHMMRNLTAGMAMITCREPLLMSIATNLKNSFAAAL
RAPTPQQREMMEEAAARIAQDNCELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEG
RRYCDPVVLTYQAERMPEQIRLKVGGVDPKQLAVYEEFARNVPGFLPSNDLSQPTGFLAQ
PMKQQAWATDDVAQIYDKCMADLEQHLHAIPPALAMNPLTQALRSLLEAVALARNSRDGI
AALGLLQKAVEGLLDATSGADADLLLRYRECHLLVLKALQDGRAYGPQWCNKQITRCLIE
CRDEYKYNVEAVELLIRNHLVNMQQYDLHLAQSMENGLHYMAVAFAMQLVKLLLVDERSV
SHVTEADLFHTIETLMRTCAHSRANAPEGLPQLMDVVRSNYEAMIDRAHGGPNFMMHSGI
SQASEYDDPPGLREKAEYLLREWVNLYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLIT
RFFRLCTEMCVEISYRAQAEQQHNPAASAAIIRAKCYHNLDAFVRLIALLVKHSGEATNT
VTKINLLNKVLGIVVGVLIQDHDVRQTEFQQLPYHRIFIMLLLELNAPEHVLETINFQTL
TAFCNTFHILRPTKAPGFVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLA
PFLRNVELNKPMQILYKGTLRVPTGPAARLPEFLCDYHYGFCDVIPPNCIQLRNLILSAF
PRNMRLPDPFTPNLKVDMLSEINIAPRILTNFTGVMPSQFKKDLDSYLKTRSPVTFLSEL
RSNLQVSNEPGNRYNIQLINALVLYVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAV
DLDTEGRYLFLNAIANQLRYPNSHTHYFSCTMLYLFAEANXEAIQEQITRVLLERLIVNR
PHPWGLLITFIELIKNPAFKFWSHDFVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTGAS
NT seq
7203 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctttcgctggctttgtctcaaatcagctatctagtggacaattta
actaagaaaaactatcgagccagccagcaagaaatacagcatattgtgaatcgtcacggt
cctgaggcagacaggcatctacttcgctgtctcttctctcatgtggatttcagtggcgat
ggtaaaagcagtggcaaggactttcaccagacacagtttctgatccaggagtgtgtgtcg
ctgatatcgaagccaaacgttattgctactctgtgttacgccgttgacaatccccttcat
taccagaagagtttgaagccatcggcccacctattcactcaactgagtaaagttcttaag
ctcagcaaagtccaagaggtgatatttggacttgctttgctcaactccagcaacgcagac
cttcgtggttttgcctcacagttcatcaagcagaaactccccgacctcctgcggtcatac
gttgacgcagatctcggaggaaaccaggaaggtggctttcaggacattgccatcgaggtc
ttgcatttactgctgtcccatctactctttggccaaaaaggagccagtgggttagggcag
gagcagattgacgccttcctgaagacactctgccgagatttcccccaggagcgctgccct
gtggtgctcgcaccactgctgtaccctgaaaaacgggacattctcatggacaggatcctg
ccagactcgggggagttagctaagaccatgatggagagttctctcgcagaattcatgcaa
gaagtcggctatggcttctgtgctagtctggatgagtgcagaaacataatcgtccagtat
ggggtgagagaggtgacagccagccaggtggccagagtcctgggcatgatggctcgtacc
cactctggcctgactgatggtatcccactacagtccatctctgctcccggtagtggtatc
tggagcgatggcaaggataagaacgacggctcgcaggcacacacgtggaatgtggaggtt
ctcatcgacgttgtgaaggaagtgaatcctaaccttaacttcaaagaggtgacctacgag
ctggaccatgcaggatttataatccgggacagtaaaggcctgcatattgtggtgtacggc
attcagagggggttgggcatggagacgtttcctgttgatctgatctatcgaccatggaaa
cacgcagaaggacagctgtcattcattcagcactctctgatgagcccagaagtgttttcc
tttgccgactacccttgccacactgtggccatagacatccttaaggccccaccggaggat
gacaacagagagattgccacctggaaaagtctggacctggtggagagcctgctgaggctg
tcagaggtgggccagtacgagcaggtgaagcagctgttcagctttcccatcaagcactgc
ccagacatgttggtgctggcattgctgcagatctccacttcctggcacacactgcgccat
gagctcatctccaccctgatgcctatcttcctgggcaaccaccctaactctgccatcatc
ctgcactacgcctggcacggacagggacagtctccctcgatccgtcagcttattatgcat
tcaatggcagagtggtacatgaggggggagcagtatgaccaggccaagctgtcacgcatc
cttgatgtggcccaggacttgaagtctctgtcgatgttgctgaatggtactccatttgcc
tttgttattgaccttgctgcacttgcttctcgtcgtgaatacctcaaacttgataaatgg
ctgactgacaaaatccgagagcacggggaaccttttatccaggcatgtgtgacattcctg
aagaggcgctgcccatccattatggggggtctggcaccagacaaggaccagcccaaaagc
gcccagctgccccctgagaccttagccaccatgctggcctgcctgcagtcctgtgcgggg
agcgtgtcccaggagctgtcagaaactatcctaaccatggttgccaactgcagcaatgta
atgaataaagcccggcaacctccaccgggtgtgatgccaaagggacgtgcccccagcacc
agcagcctggatgccatctcccctgtgcagatggactctctctccggcatggggtccctg
aacctggggggcacaaccacctcccacactcagagcatgcagggcttcccaacctcactg
agctcagctttcagtaatccccagtccccggctaaagccttcccccccctcaccaacccc
aatcccagtacaccatttgggggcattgggagcattgggagcctgtcctcgcagcttcct
ggcatggactctggtcccctgggcacaggcattggctccagtattggctctagtctgggg
atgccgactgtgaacaccgacccatttggcaccaggaagatgagcacaccaggcttgaac
ccaccaacctttcagcagactgacctttctcaggtttggcccgaggcgaaccagcacttt
agtaaagagattgacgacgaagcaaacagttacttccagcgcatctacaaccacccacct
catccaactatgtccgtggacgaagtactggaaatgctgcagaggttcaaggattcaacc
atcaagagggagcgagaagtgttcaactgcatgcttcggaacttgtttgaggagtacaga
ttcttcccccagtacccagacaaggagctgcacatcactgcctgcctttttggtggcatt
atcgagaagggtctcgtcacctacatggccctgggcttggccctccgatatgttcttgaa
gccttaagaaaaccctttggatccaaaatgtattactttggaattgccgccctagatagg
tttaaaaacagactaaaggactatcctcaatattgtcaacatctggcttcaattgcccac
ttcttgcaattcccccaccatttacaagagtatatcgagtatgggcaacagtcacgggac
cctccggtgaagatgcagggctccatcaccacgcctggaagtctggcactggcacaggtc
cagtcgcagcaacccggggtcccaaaagctccacagccaggccagcccagcactctggtc
accaccaccaccactacaaccactgtagccaagaccccgaccatcacaagacccacaccc
agcaccttcaagaaggatgtgccgccctctataaacacaaccaacattgacaccctgctg
gtggccaccgaccaaacggaacgtattgtagagcctcccgagaatgtccaggagaagatt
gcgttcatattcaacaacctctctcagtccaacatgacacaaaaggtggaagagttgaag
gagactgtgaaggatgagtttatgccctgggtgtctcagtacctggtgatgaagcgtgtc
agcatcgagcccaacttccacggcctctactccaacttcctggacactctcaagaacccg
gagtttgtcaagatggtcctcaatgagacctatagaaacatcaaggttctgttgacatct
gacaaggcagctgccaacttctctgatcgctcgctgctgaagaacctgggccactggttg
ggcatgatcacactggccaaaaacaagcctatcctatacacagatttggaggtgaagtct
ctgctactggaagcgtatgtgaaaggccagcaggagctcctttatgtggttccatttgtg
gccaaagtgttggagtccagtctgcgaagcatggtcttcaggccccagaacccctggaca
atggccatcatgaatgttcttgcagagctgcatcaagaacatgacctcaagctgaacctg
aagtttgagattgaagttctgtgtaagaacttgtctttggacatcaacgacctgaagcca
gggaccctgctgaaagacaaagacaagctgaagagtctggaggaacagctgtctgcacca
aagaaagaggccaaggctccggaagagatgctgccagtttctaccggtggttttctggac
tttaatcaaatgcctgttttgcgaccaacaggggactttgttcctttcgccgcccccccc
tcaactccagctgtcactaccaccccttgcacaaccaccggcccccccacccctcagttt
agttaccacgacatcaatgtgtatgccttggcaggcctggctccacacatcaatataaat
gtcaacatctcgctgctgcaggcccatccccagctgaagcagtgtgtacggcagtcagtg
gagcgtgctgttcaggagctggtgcacccggtggttgaccgctctatcaaaatagccatg
acgacctgtgagcagatcatccggaaggactttgctttggattcggaggagtcccgcatg
cgtgtggctgcccaccatatgatgaggaacctgactgctggcatggccatgatcacctgc
cgcgagcctctgctcatgagcatcgccaccaaccttaagaacagctttgctgctgcgtta
agggcaccaaccccacaacagagggaaatgatggaagaggctgcagccaggattgctcaa
gacaactgtgaattagcatgctgcttcattcagaaaacagctgtggagaaggctggccct
gaaatggacaagagactagccacggagtttgagctgaggaagcatgcacgccaagaagga
cggcggtactgtgatcctgttgttctgacgtaccaggctgaacgcatgccagagcagatc
agactcaaggtgggaggcgtggacccgaagcagctggccgtgtatgaggagtttgccagg
aacgttccaggtttcttacccagtaatgatctctcccaacccactggcttcttggctcag
cccatgaagcagcaagcgtgggccacggatgatgtagctcagatctacgacaagtgcatg
gcagacttggagcaacaccttcatgccatccctccggccctcgccatgaaccccctgacc
caggctctgcgcagcctgctggaagctgtggccctggccagaaactccagggatggcatc
gctgcactcggccttctgcagaaggctgttgagggtctcctggatgcgaccagtggagct
gatgcagacttgctgctccgctacagagagtgccacctgctggtgctcaaagccctgcag
gacggacgtgcctatggaccacagtggtgcaataagcagatcaccagatgtctgattgaa
tgccgcgatgagtacaaatacaacgtggaggcggtggagcttttgatcaggaaccatctt
gtgaatatgcagcagtacgacctgcacctggcacagtcgatggaaaacggcctgcactac
atggcagtagcgtttgccatgcagttggtgaagctgctgctggtagatgagcgcagcgtc
agccatgtgactgaggcggacctcttccacacaattgagactttgatgaggacctgtgca
cactccagagccaacgcacctgagggccttccccagctgatggatgttgttcgctccaac
tatgaggccatgattgaccgggcccacggaggaccgaacttcatgatgcactctgggatc
tcccaggcttcagagtatgacgaccctccgggcctgagggagaaggccgagtacctcctg
agggagtgggtcaacctgtaccactcagcggctgctggcagggacagcaccaaagctttc
tctgcttttgttggacagatgcaccagcagggcatcctgaagacggatgacctgatcacg
aggttcttccggctttgcacagaaatgtgcgtggagataagttaccgggcacaggctgag
cagcagcacaacccagcagccagcgcagccatcatcagagcgaagtgttaccacaacctg
gacgccttcgtcaggctcatcgccctgctggtcaaacactccggagaggccaccaacaca
gtgaccaagatcaacctcctcaacaaggtgctgggtatcgtagtcggggtcctgattcag
gaccatgatgtccgtcagacagaattccagcagctgccgtaccaccgcattttcatcatg
ctgttgttggagctcaatgctccagaacatgttctggagaccatcaactttcagacactc
acggccttctgcaataccttccacatcctgagaccaaccaaagcgcccggctttgtgtac
gcctggctggaactcatctcccaccgcatcttcatcgccaggatgctagcgcacacaccg
cagcagaagggatggcccatgtacgcacagctgctgattgatctcttcaagtacctggcc
cccttcctgaggaatgtagagctcaacaaacctatgcaaatcctctacaagggcacactg
cgagtgcctactggtcctgctgcacgacttccagagttcctgtgtgactaccattatggt
ttctgtgatgttatcccacccaactgcatccagctccgcaacctcatcctcagtgccttc
ccacgcaacatgaggctcccagaccctttcacacccaacctcaaggtggacatgctgagt
gagatcaacatcgcgccccgtatcctcaccaacttcacaggcgttatgccttcccagttc
aagaaggacctggactcgtacctgaagactcggtcaccagtcaccttcttgtctgagctg
cgcagcaacctgcaggtgtctaacgagccaggaaaccgctacaacatccagctgatcaac
gcactggtgttgtatgtgggcacacaggcaatcgctcacatccacaacaagggcagcacc
ccctccatgagcaccatcacccactctgcacacatggacatcttccagaacctggccgtg
gacctggacactgaggggcgttacctgttcctgaacgcgatcgccaatcagctgcgttac
ccaaacagtcacacccactacttcagctgcaccatgctctacctgttcgctgaggccaac
nacgaggccatccaggagcagatcaccagagttctgttggagaggctgatagtgaacagg
cctcacccatgggggctcctcatcaccttcatcgagctgatcaagaaccctgccttcaag
ttctggagccacgactttgtgcactgtgcccccgagattgaaaagctgttccagtcagta
gcccagtgctgcatgggacagaagcaggcccagcaggtgatggagggcaccggtgccagc
tag
DBGET
integrated database retrieval system
