Pseudochaenichthys georgianus (South Georgia icefish): 117448494
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Entry
117448494 CDS
T09629
Name
(RefSeq) LIM and calponin homology domains-containing protein 1-like isoform X1
KO
K24422
LIM and calponin homology domains-containing protein 1
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
pgeo04990
]
117448494
Domain-containing proteins not elsewhere classified [BR:
pgeo04990
]
LIM domain-containing proteins
Other lim domain-containing proteins
117448494
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF4757
CH
LIM
Motif
Other DBs
NCBI-GeneID:
117448494
NCBI-ProteinID:
XP_033941700
LinkDB
All DBs
Position
1:36579034..36607720
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AA seq
1742 aa
AA seq
DB search
MASPTAGREVPDASPQDEPEASAQPHPEPACLEAQQWIEAVTGKSFGEKDFRSGLENGIL
LCELLSEIKPGLVKKINRLPTPIAGLDNLSVFLRGCEELGLRGAQLFDPGDLQDTSVRAN
LKDSDCNRKLKNVLNTLFWLGKAASGCASYSGPTLNLKEFEGLLAQMRLETDESGDGSQK
RSVRDSGYDCWDSERSDSLSPPQHTRDNSLDSLDSIGSRSQHSPSPDVVNRGNSDGRGSD
SDADAPSRRPDVRKDDMLARRTASSESRSFVPFNQFLPNRANTSCYIPAPRRKTHTEEGD
QRSQASQEQSTRTGPQHRTPKTVTWAPEKNEEKQEEEKVTQEVLEQKKLQRLQKAGVKVL
PAAVRYSSPPTMEEQEVRSPSPSIILRCENEFLNTHKSAWDSSSDVEEEAEVRKVPDVCK
DDLASRRAHRGTVAPKVHQFVPTPACSSKDRERWEGIRRASQQTLQEKEISDKEKVPDII
TRRDNPFLNSASRREEEEDGEEEGEEGKVIATPNKQKDDLARRRALNKPLPHRDGPMSFV
SAPMSEKDMQRWERLKMTEPSFSLKQMDCSEASPAPAVCQACLEKNYGSPFSGSAKARRG
YCKVVTFGGVTEIEQPIDTIASSEGEETELLRRLLSKATVAMPTIDLGSQLSEREHSQVN
GADLNQTTPAFTDLPPCTPETPPTPAEMDARLAQYEKRAEEDEEDEEEEERIPDLQKDDM
MARRTGVFHKQSTSTATFNRFLPLPSTKRCTQGEVTTDAAPRNRRQVQADRREKVNARSF
SHRVEQQQPRVPMETPDRTVIRATSHREYDDEEDEYDENEPLPDLEKDDMMARRTGSFLK
PSAVKTNQTKNQFLPVPGSVKYKVAPVSAMKPLHSRPKLTEKMASESSIVTVAAEPQASL
SRASTLLKCAGLRERQGADGRQEGHMTTPDATEPLSTPSSSSATSLTCKVEKSSVEERVV
EKVEERKTEMNERKKPFWLDDDDLPPIMVRRRVAFMSEDTETVSMSDILNEEEVGHLPPV
SQSRNERMHEQYNNSQEDDDPWRNDLARWKNRRRCASQDLIKKEEERKRMEKRMKEEGID
SNKRKSIKTYKEIVEEKERREIELCEAYRNAGTPEEAAMVLQRYALRFTISDATLDSLKL
PRSTSNSKQEHNQPDKENTLTPTIDDTSGPPHKPEQPVIKEQRHTEPEDMETKITKQETS
VSVSSSSGSPGSPLGPVTISENVPPQSLKLSEPRAKPTESPTTPQKPPAAEETKPHTNHA
RPQIAQVQPHTTQPTYTLPSPQPVSPRPVPLLTAKPYCQPRSTQSGHKPVKMDGLVRVNG
EVTEDVPCSTPPTSALHSPSKVKDVPSEQKEEEVPSKQTEKDAPSEKISTNHEKVEHTPS
PQREKPTSCLGSAISSLIGGRNCTTTTIIVTELTHTEPHHPDIHSNGQVNGTSGLSSPVE
ENKSQSATSSYSMQDYSPTVTEGLEESSVTIETPMLNLAKRVNHWVWDPNEERKRLESWQ
QEQERLLQEQYQKEQKKLKQEWEKAQLEVQEEERKHNEEERKILEETVTPLSPTGLLNQQ
PVRTRTTSSATENNAAEGGNVPPQQNGQRREATDDQHESKLHFFQDSPCDGEPSKKQELW
KTASLDRKPQLNQSQFVKRSESHDAVTSKAQPPPTSPQPPSPTRCVSGRRLCSGCSQPLG
KGAAMIIDTLGLFFHVQCFKCAVCEGQLGDATVGTDVRIRNGLLSCHECYIASRGRGQPT
TL
NT seq
5229 nt
NT seq
+upstream
nt +downstream
nt
atggctagccccacggcaggtcgagaagtcccggatgcttcaccacaggacgagccggag
gcgtcggctcagccccatcccgaaccagcctgtctggaggctcaacaatggatagaggct
gtaacagggaagagctttggagaaaaggacttccgcagtggactggagaacggcatcctg
ttatgcgagctgctgagtgagatcaaaccagggctggtcaagaagatcaacagactgccc
acccccatcgctggcctggacaacctgtctgtcttcctgcgtggctgtgaggagttgggc
ctgaggggcgcccagctgttcgaccccggggacttgcaggacacttccgtacgagctaac
ctcaaggactctgactgcaaccgcaaactcaaaaatgtgctgaacaccctgttctggctt
gggaaggctgccagcggctgcgcctcctacagcggacctactctcaacctcaaggagttt
gaagggcttctggctcaaatgaggctggaaactgatgaaagtggtgacggttcacagaag
cgcagtgtgagggacagcggctacgactgctgggactctgagagaagtgactctctttct
ccaccacaacacactcgtgacaactccctagacagtctggactccattggctctcgctca
cagcacagcccttctcctgatgtggtgaatcgaggcaacagtgatggacgaggcagcgac
tcggatgctgatgcccccagcaggaggccagatgtgaggaaggatgacatgttggccaga
cggacggccagcagtgaatcaagaagcttcgttccctttaaccagtttcttcccaaccga
gccaacaccagctgctacatccccgctccacgccgaaaaacacatacagaggaaggagat
cagcggagtcaagcctctcaagagcagtccacaagaactggaccgcaacacagaactccc
aagactgtgacttgggcacccgagaaaaatgaggaaaaacaggaagaggaaaaagtgacg
caggaagtgttggagcagaagaagctgcagaggttgcagaaggcaggggttaaagttctg
cctgctgccgttcgctacagcagccctccaacaatggaggaacaggaagtgagatctccg
tccccgagcatcatccttcgctgcgaaaatgaatttctgaacactcataaatctgcctgg
gactcttcctctgatgtggaagaggaggccgaggtgcggaaagtcccggatgtttgtaaa
gacgatctagcatccaggcgagctcatcgcggcacggttgctcccaaggtgcaccagttt
gtcccaacacctgcatgtagcagcaaagacagggagcgctgggaaggcattagacgagcc
tcgcagcaaacactgcaggagaaggagatcagtgacaaggaaaaagtccctgacatcatt
acacgccgagacaatccttttctaaactccgcctctcgccgcgaggaagaggaggacggg
gaggaagagggagaagaggggaaggtcatagcaacgcctaataagcagaaggatgacctg
gctcgtaggcgggctctgaataagcccctccctcacagggacggaccaatgagctttgtt
tctgccccaatgagcgagaaagacatgcagaggtgggagagactcaagatgactgaaccc
agtttcagtcttaaacagatggactgtagtgaggccagcccggccccagccgtgtgtcag
gcttgtctggagaaaaattatggaagtcctttcagcggatcagcaaaggctagacggggt
tactgcaaagttgtgacctttgggggcgtgacagagatcgagcagccaatagacacaatc
gcatcaagtgaaggggaagagacggagttgctaagacgactcctttccaaggcaactgta
gccatgcctactattgacctaggctcccagctttcagagcgggaacacagccaggtgaat
ggagctgacctcaatcaaaccacccctgcctttactgacctcccaccctgcacccctgag
acccctcctactcctgccgagatggatgcacgtctggctcagtatgagaaaagagcagag
gaggatgaagaggatgaggaggaagaagagaggatcccagatcttcagaaagacgacatg
atggcaaggaggacaggagttttccataaacaaagcacttctacagcgacgttcaaccgt
ttcctgcctctgcccagtaccaagcgctgcactcaaggcgaggtcaccactgacgcggct
ccgcggaacagaaggcaggtgcaggcagacaggagagagaaagtaaacgccaggagtttc
tctcatagagtggagcaacagcaacccagagttcccatggaaacacctgacaggactgta
atccgagcaacgtctcacagagaatatgatgatgaagaggatgagtatgatgaaaacgag
cctttgcctgacctggagaaggacgatatgatggctcgaaggaccggatcattcctaaaa
cccagtgcagtcaaaacaaatcagaccaaaaaccagttcctgccggtacctggttcagtg
aaatataaagtcgcccctgtgtctgcaatgaagcctctgcacagcagacctaaactcact
gagaagatggccagtgaaagcagcatcgttaccgtggcagcagaacctcaggcttcgctc
tccagagcctcgaccctccttaagtgtgccggtctgagggagaggcagggggcggatgga
aggcaagagggacacatgacgaccccagatgctacagagcccctctctactccgtcgtcc
agttctgccacttccctaacttgtaaagtggaaaagtcaagtgtagaggagagagtggtg
gaaaaggtggaggagagaaagacagaaatgaacgaaagaaagaaaccattctggctcgac
gacgatgatctgcctcccatcatggtgaggcggcgagttgcttttatgtctgaggacact
gagaccgtgagcatgagtgacatacttaacgaggaagaggtgggacacttaccgccggtg
agccaatcacgaaacgagcgcatgcacgagcagtacaacaactctcaggaggacgacgac
ccctggagaaacgacttggctcgctggaagaatcggcgtcgctgtgcgtcacaggatctg
atcaagaaggaagaagagaggaagaggatggagaaaaggatgaaggaggagggaattgac
agtaacaagaggaaaagcattaaaacctacaaagagatcgtagaggagaaggagcgcaga
gagatagagttgtgtgaagcctacaggaatgcagggactccagaagaggctgccatggtt
ttacagcgctacgctcttcgcttcaccatcagtgacgcaacactggacagcttaaaactg
cccagatccacctcaaattctaaacaggaacataatcagccggacaaggagaacacattg
actcccactattgatgacacatcaggaccgccgcacaaaccagaacaacctgtgataaaa
gagcagaggcacacagagcctgaagacatggagaccaaaataaccaaacaagagacgtca
gtttcggtctcctccagctccgggtcacctggcagccccctcggccccgtcacaatctca
gaaaatgtcccccctcagtcccttaaactaagtgagcctcgagccaaaccgacagagtct
ccaaccactccgcaaaaaccaccagctgcagaagaaacaaagcctcataccaatcacgct
cggcctcagattgctcaggtgcagcctcacaccacacagcccacatacacactcccctcc
ccccaacctgtctccccccgacccgtccccctgctgacagccaaaccctactgccagccc
aggagcacacagtccggacacaagcccgtcaagatggacgggttggtgcgagtaaatgga
gaggtgactgaagatgtaccttgttccactccacctacctctgctctgcactcgccatca
aaggtcaaagatgttccctcagagcagaaggaggaagaagttccctccaaacagacggag
aaagacgctccctcagagaagatttccactaatcacgagaaggtggagcacacgccttct
ccgcagagagaaaagccaacatcgtgtttaggctctgccatcagctccctgattggaggc
agaaactgtaccaccaccaccattattgtgaccgagctcacacatacggagccacatcac
ccagacatccacagcaatggacaggtcaacggtacttctgggttatccagtccagtggag
gagaacaagtctcagtcggctacatcatcctacagcatgcaggattattctcccactgtc
acagaggggcttgaggagagcagtgtgactattgagacccccatgttgaacttggctaaa
cgtgttaatcactgggtctgggaccccaatgaggaacgtaaacgcctggaaagttggcaa
caggagcaggagcgcctccttcaggagcaataccagaaagaacagaagaagctgaagcag
gagtgggagaaagctcagctggaggtgcaggaggaggagagaaaacacaacgaagaggag
agaaagatcctagaggagacggtgacacctttaagtcccaccggcttgttaaaccagcag
ccggtccggacaaggacgacttcatcagcgacagaaaacaacgcggcagaagggggaaac
gttcctccacagcaaaacggccaaagaagggaagcgaccgacgaccagcatgaatccaag
ctgcattttttccaggattctccatgtgatggcgagccttcaaagaaacaggaactgtgg
aagacggcctctctggaccgcaaacctcagctaaaccagtcacagtttgttaaaaggtct
gaatcacatgatgctgtaacaagcaaagcgcagccaccccccacatcacctcagcccccc
tcacccaccaggtgtgtgagtgggaggagactctgttctggttgttctcaaccgctgggc
aaaggagctgccatgatcatcgatacactcgggctgtttttccacgtacagtgttttaag
tgtgcagtgtgtgaaggccagctgggtgacgccactgtaggaactgatgtccgtattcgt
aacggactgctgagctgtcatgagtgctatatcgcatctcgaggcagaggtcagcccacc
acactatga
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integrated database retrieval system
