Pseudochaenichthys georgianus (South Georgia icefish): 117448704
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Entry
117448704 CDS
T09629
Symbol
lrba
Name
(RefSeq) LOW QUALITY PROTEIN: lipopolysaccharide-responsive and beige-like anchor protein
KO
K24181
lipopolysaccharide-responsive and beige-like anchor protein
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pgeo04131
]
117448704 (lrba)
Membrane trafficking [BR:
pgeo04131
]
Endosome - Lysosome transport
Others
Others
117448704 (lrba)
Endosome - Golgi transport
117448704 (lrba)
Autophagy
Autophagosome formation proteins
Atg8 conjugation proteins
117448704 (lrba)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF4704
Beach
DUF1088
NBCH_WD40
PH_BEACH
Neurobeachin
WD40
Laminin_G_3
WD40_Prp19
Beta-prop_EML_2
WD40_CDC20-Fz
WDR55
Beta-prop_WDR75_1st
Beta-prop_TEP1_2nd
Beta-prop_EML
Beta-prop_WDR90_POC16_2nd
WD40_WDHD1_1st
EIF3I
WD40_MABP1-WDR62_1st
SUKH_6
Motif
Other DBs
NCBI-GeneID:
117448704
NCBI-ProteinID:
XP_033941954
LinkDB
All DBs
Position
1:37090917..37276640
Genome browser
AA seq
2946 aa
AA seq
DB search
MASEETAGSADAQDGTPGAMALNPGVPIRGIKMKFGVLAGLVEVGEVSNRDIVETVFNLL
VGGQFDLEMNFIIQEPDSIVCMVELLDKCEPTCQAEIWSIFSAILKKSVRNLQACTDVGL
IQLVLHRISTTDSMIADLLVDMLGVLASYSITVKELKLFFSKLQGXKGQWPRHAVKLLSV
MKYMAHRNGPDSFFSFPGKNAAAIALPPIAKWPYQNGFTFHTWLRMDPLNNINVDKDKPY
LYCFRTNKGMGYSAHFVGGCLIVTSLKSKGKGFQHCVKYDFKPQKWYMVTLVHVYNRWKN
SEISCFVNGELASFGDIAWFVNTSDTFDKCFLGSSETADVNRVFCGQMGAVYLFGEALSA
AQILAIYQLGPGYQGTFKYKAESDLLFAEHHKTLLYDGKLSSSIAFAYNPRATDAQLCLE
SSPKDNASIFVHSPHALMLQDVKAVVTHSVQSGIHSIGGVQVLFPLFAQLDYCQPSSHEL
DTSVCCTLLSFVMELLKNSVAMQEQVLACKGFLVIGYTLEKSSKVHVTRPVLDIALAFSR
YLSNLQNGILLLKQLCDHILFNPAIWIHAPAKVQLTLYTYLATEFISTVTIYNTIRRVGT
VLQVMHTLKYYYWVINPQDRSGVVPKGMDGPRPNQKEILSLRAFLLLFVKQLIMKDHGVK
EDELQSILNYLLTMHEDDNLMDVLQLLVAVMSEQPGSMVQAFDQRNGIRVIYKLLASKSE
GIRVQTLKVMGYFLKHLPPKRKLEVMMSHGLFSLLTERLMLHSGKFTMTTYNVLFEILTE
QICTQVIHKQHPDPDSTVKILNPQILKVIASLLKASPPSPESMEVRKVFLSDMIKLFNNS
RENRRSLLQCSVWQEWMLSLCYIHPQNSEEQKITEMVYAIFRILLYHAIKYEWGGWRVWV
DTLSITHSKVTFEQHKENLSHMFRQYQHQGSTGSMRSIRTISGVSQRSDAMECVNGTPAE
ETAPSTVIELTVDELSHKSPDTASGSTITSSPPEAAEGSGHASITVSNILTRDDEEEEEE
QQQQAVEESSKDGSGDEGKETVTQTDDKEEQSEETNKEEQETSTGKSSDDLQTSVGDAED
TNATEGVRDSATPSASDDAQTSATHDDKSEPIKGESATSTPEESLNEADTEVPEVAEQDY
NKDQTSPESAACLENIVQEGDSVFNEDLADVSSVSDQTPPSDADDSQEEFSYASAVAGEE
GEVRQKEDAKDDDDEGKEDDQEGHEIKTDEDSDEKQAVDLQEKVEEESEAEEKQVSGLES
ETSLTETPEQSETEAPKDDPSSSITVPATPDQQPSDATPTSTAQEVPAASDPPSPSQPLD
TTSTTEEETLPAPTDGTCDAQKTAAPVSKTKEIKIARLDVSNVALDTERLELKETSTTET
SQGQPPAAAAAAAAGGSAGQQREGSNPAPRSTMFRIPEFRWSHMHQRLLADLLFSIETDV
QMWRSHSTKTILDFVNSSENVVFVHNSIHIISQVVDNLIMACGGILPLLSAATSSSHELE
NIEPSHGLTVEASVTFLHRLINLVDVLIFASSLTFTEIEAEKNMSSGGILRQCLRLVCAM
AVRNCLECQQAQCSHGAEASARSYTAMPNMGAAMSAAAQSPVDAVTGGMSPVRDLDRLLQ
DMDINRLRAVVFRDIEDSKQAQFLALAVVYFISVLMVSKYRDILEPQNDKKRPQRSQSSR
STDSGAISGGLEVENGVSLRRYDSGIGDDHTSAAASEAELSSSGVTHGPDAISEALSTLS
SEVRPSLPSDSKGKNVKDILRSLVSAPADDMMVDPSLLPPTFLGSVGDAARDSSRQFRSF
DRSVVVAPKKTGMAPSAGAFTSVPSATAASVSAGTPIDSVAMVSSGDSSQSTSAATGGQV
PASASLPSVPPLSPVTQNTAPNMSISERLENALEKAAPLLREIFVDFAPFLSRTLLGSHG
QELLIEGTSLMCMKSSSSVVELVMLLCSQEWQNSIQKNAGLAFIELVNEGRLLSHTMKDH
LVRVANEAEFILSRQRTEDIHKHAEFESNCAQYAAEKRDEEKMCDHLIRAAKYRDHVTAT
QLVQKIVNILTDKHGAWGSSAKSRPREFWRLDYWEDDLRRRRRFIRNPSGSTHSEATLKA
VAEHVADISASEEDILKGKQSIRSQALGNQNSESETSLDGDDDTLSSPEEKDLENFTGPV
NLSTSAQLVAPAVVVKGTLSITPSELYFEVDEDDPSFKAIDPKILSYTEGLHGKWLFTEI
RAVFSRRYLLQNTSLEIFMANRTAVMFNFPDAATVKKVVHSLPRVGVGTNFGLPQTRRIS
LATPKQLFKASSMTQRWQRREISNFDYLIFLNTISGRTFNDLNQYPVFPWVITNYDSEEL
DLTLPSNFRDLSKPIGALNPKRAAFFSDRYESWEDDQVPKFHYGTHYSTSSFTMMWLLRI
EPFTTFFLNFQGGKFDHADRTFSSVARAWRNCQRDTSDVKELIPEFYYLPEMFVNANSYN
LGVMEEGAMVSDVELPPWAKSPEEFVRNNRLALESEFVSCQLHQWIDLIFGYKQQGPEAT
RALNVFYYLTYEGAVNLSSITDPMLREAVESQIRSFGQTPCQLLIEPHPPRSSAMQVTPL
MFTEQMQQDVIMVLKFPSNSPVTHVAANTQAGLTSPAIITVTANRIFAVNKWYGLTGHQS
STVQDQQYQLPVEIDPLIASNVGSHRRQISDLLDQSIQISSQCFIITADNRFILLCGFWD
KSFRVYSTDSGKLTQIVFGHRDVVTCLARSESYIGGDCYVLSGSRDATLLLWYWNGKHNS
IGESPGTEFTTPRAILTGHDCEVTCASVCAELGLVVSGCKEGPCLIHSMNGDLLRTLEGP
ERCLRPRLIQSSTEGHCMIYYEKGQFCNFSVNGKLLRHMEVEDSIKAMYLSRDGQYLLTG
GDGGVVSVWQVHNFKQLFTYPGCDAGIRSMTMSHDQRCIITGMSSGSIVLFYNDFNRWHH
EYQTRY
NT seq
8841 nt
NT seq
+upstream
nt +downstream
nt
atggctagcgaggagacagcgggctctgcggatgctcaggacgggactccaggagccatg
gcgctcaaccccggagtgcctatccggggaataaagatgaaattcggcgtgctcgctggc
ctggtggaagttggggaagtttccaaccgggatatcgtggagacggtgttcaacctgctg
gtgggaggccagtttgaccttgagatgaacttcatcatccaagaacccgacagcatcgtg
tgcatggtggagcttttggacaagtgtgagcccacctgtcaggcagagatctggagcatc
ttcagcgccatcctcaagaagagcgtgcgcaacctgcaggcgtgcactgacgtggggctc
atccagctggtgctgcatcgcatatccaccactgacagcatgatcgcagacctactggtg
gacatgttgggcgtgctcgccagctacagcatcacagtgaaagagctgaagcttttcttc
agcaaactgcaagggnagaagggccagtggcctcgccacgcagtgaagcttttgtcagtt
atgaagtacatggctcacaggaacggccctgactcattcttcagcttcccggggaagaac
gcagctgctatagctctgcctcctatagcaaaatggccgtaccagaatggctttacattc
cacacgtggctccgcatggatcctctcaacaacatcaatgtagacaaggacaagccttac
ctgtactgtttccgcaccaataaaggcatgggttactctgcacactttgtggggggctgt
ttgatagtgacctctttaaaatccaaggggaaagggttccagcactgtgtaaagtacgac
ttcaaaccacagaagtggtacatggtgaccctcgttcatgtgtacaaccgctggaaaaac
agtgaaattagctgctttgtgaacggggaactggcttcctttggagacatcgcctggttt
gtcaacaccagtgacacatttgacaagtgtttcctgggatcgtcagagacggcagatgtc
aaccgtgtgttctgcggacagatgggggcagtgtacctgtttggagaggctctcagcgct
gctcagatcctggccatctatcagctggggccggggtaccagggcacattcaagtacaag
gctgagagtgacttgctgtttgcggagcatcataagaccttactgtatgatggcaagttg
tcctccagtatcgccttcgcttacaaccctcgcgccaccgatgcccagctctgccttgag
tcctcccccaaggacaacgcatccatatttgttcactcaccccacgcgctcatgctgcag
gacgtgaaggccgtggtgactcactcagtccagagcggcattcactctatcggaggcgtg
caggtcctcttccctctgtttgcacagctggattactgccagccctccagccatgagctg
gacacctctgtctgctgcactttgttatcctttgtgatggagctcttgaagaactcagtg
gctatgcaagagcaagtccttgcctgcaaaggctttctcgtcatcggctacactttggag
aagtcttccaaggtgcatgtgacgcggcccgtcctggacattgcgctggccttttcgaga
taccttagcaacttgcagaatggcatcctgctgctcaagcagctgtgtgaccacattctg
ttcaaccccgccatctggatccatgcccctgccaaggtgcaactgacactctacacttac
ctggcaacggagttcatcagcacagtgaccatctacaacaccatccgcagggtgggcacg
gtactgcaggtcatgcacacactgaaatactactactgggtcatcaacccccaggaccgc
agtggagtcgtgcccaaaggcatggatggtccgagaccaaaccagaaggagatcctctct
ttgcgagcctttctgttgttgtttgtcaagcagctcataatgaaggatcatggagtgaag
gaagacgagctgcagagtatcctcaactacctcctgaccatgcatgaggatgacaatctc
atggacgtgctgcagttgctggtggctgtgatgtcagagcagccggggtccatggtccag
gccttcgaccagcgcaacgggattcgtgtgatttacaagcttctggcctcaaagagtgaa
ggaattagagtgcagaccctgaaagtaatgggatactttctgaaacacttgccaccaaag
aggaaactcgaggtcatgatgagtcatggccttttctccctgctcactgaacgcctgatg
ctccactccggaaagttcaccatgacaacctacaacgtgctgtttgagattcttactgag
cagatctgcactcaagtgatccataaacagcatccggaccccgactccactgtgaagatt
ctcaacccacaaattctgaaggtaatagcttctctgctgaaggcctcacccccgtccccc
gagagcatggaggtgcgcaaggtcttcctgtcagacatgatcaaactgttcaataatagc
cgagaaaaccgaaggagcctgctgcagtgctccgtgtggcaggagtggatgctctccctg
tgctacatccaccctcagaacagcgaggagcagaaaatcacggagatggtgtacgccatc
ttccgtatcctcctctaccacgccatcaaatacgagtggggcggctggcgggtctgggtg
gacaccctgtccatcacacactccaaggtgaccttcgagcagcacaaagagaatctgtcc
catatgttccgtcagtaccagcatcaggggtccacaggctcgatgagatccatcagaacc
atctctggtgtcagccaaagatcggacgccatggagtgtgttaacgggacccctgcagag
gagacggccccttccacagtcattgagctcacagtggacgagctgtcccacaagtccccg
gacacagcatctggctccaccattacctccagcccaccagaggctgctgagggaagtgga
cacgcatccatcaccgtgtccaatatcctgaccagggatgacgaagaagaagaagaagag
cagcagcagcaggctgttgaggagtcttccaaggatggctcaggtgatgagggaaaagag
actgtgacacaaacggacgataaagaggaacagagtgaagagaccaataaagaggaacag
gagacttccactggcaagagctccgatgatctgcaaacatcagttggcgacgcagaggac
accaatgcaacagaaggggttagagactctgctacaccatctgcaagcgatgatgcacaa
acatctgcaacacatgatgacaagtctgaacctatcaaaggggaatcagcaacctccaca
ccagaagagtctttgaatgaagcagacacagaggtgcccgaggttgcagaacaagactat
aataaggaccaaacgtcccccgagtcagcggcctgtctggagaacattgtgcaggaagga
gactccgtcttcaacgaggatctggctgacgtgtcctctgtcagcgaccagaccccccca
agtgatgctgatgatagccaagaagagttctcttatgcctctgcagttgccggagaggaa
ggggaggtaagacaaaaggaggatgctaaagatgacgatgatgaaggcaaggaagatgat
caggaaggtcatgagataaagacggacgaagatagtgatgagaagcaagcggttgactta
caagaaaaagtggaagaagagagtgaagctgaagagaaacaggtgtctggattggagagt
gagacttctctaactgaaacacctgaacagagtgagacagaagcacccaaagatgacccg
tcttcctccataactgttcccgctacaccagaccagcagccttctgatgccacaccaacc
tcgacagcccaggaggtcccagcagcctcagaccccccctcacctagccagcctttagat
accaccagcaccactgaagaagaaaccctgcccgctcccacagatggcacctgtgacgca
cagaagactgcagcgcctgtcagcaagaccaaagagatcaaaatcgcccgactggacgtg
tccaatgtggccttagacacggagagacttgaattaaaggagacctcaactacagaaacg
agccagggccagcctccagcagcagcagcagcagcggcagcgggggggtctgcaggtcag
cagagagagggcagcaatccggcccctcgctccaccatgtttcgtatcccagagttccgc
tggtcccacatgcaccaacgcctcctggctgacctgctcttctctattgagacagatgtg
cagatgtggaggagccactccacaaagactattctggactttgtgaacagcagcgagaac
gtggtgtttgtccacaacagtattcacatcatctcccaggtggtggacaacctcatcatg
gcctgtggaggcattctacctctgctctctgctgccacctcctcctctcatgaactggag
aatatcgaaccctcccacggtctgacggtggaggcttcagtcaccttcctccaccgcctc
atcaacctcgtggatgttctcatctttgccagctcccttaccttcacagagatagaagct
gagaaaaacatgtcgtcgggaggcatcctgcgacagtgccttcgcctcgtttgtgctatg
gctgttagaaactgtctggagtgtcagcaagcccaatgcagtcacggtgcagaagcctcc
gcacgcagctacacagccatgcccaacatgggagcagccatgtctgcagctgcacagagt
cctgttgatgccgtgacaggtgggatgtctccagtcagagacctggaccggcttctgcag
gacatggacataaaccgcctcagggctgtggtcttcagagatatcgaggacagtaagcag
gctcagtttttggcgcttgctgttgtctacttcatctcagtcctgatggtgtctaagtac
cgcgacatcctggagccccagaatgacaagaaacgccctcagaggtcccagtcttccagg
agcacagatagcggggccatttctggtggactcgaagtggagaacggagtctctctccga
cgttatgactctggcatcggggatgaccacacctcggcggccgcgagcgaggcggaattg
tcatcctctggcgtgactcacggcccagacgccatctcagaggccctgtctacgctgtcc
tctgaggtcagaccttctctgccctctgattcaaagggcaagaatgtgaaggacattctg
cgcagcctcgtgagcgctccagctgatgacatgatggtggacccaagtctgctgccacca
acgttcctaggaagtgtgggcgatgcggccagagactcatctcgacagttccgctcattt
gataggagtgttgtcgttgcacctaagaaaactggcatggcaccgtctgcaggcgctttc
accagcgtcccatcagccactgctgcgtctgtgtctgccgggacacccatcgacagcgtc
gccatggtatcttctggagactcctcccagagcacctctgcagctacaggcggccaggtt
ccagccagcgctagcctgccatctgtccccccactctcccctgtgacccagaacacagcc
cccaatatgagtatctcagagcgtctggagaatgccctggagaaggcagctcctctgctg
agagagatcttcgtggactttgctcccttcctctctcgaactctgctgggtagccacggg
caagagctcctcattgagggcacaagcctgatgtgtatgaagtccagcagctcggtggtg
gagctcgtcatgctcttgtgttcacaggaatggcagaactccatccagaagaatgcaggt
ctcgccttcatcgagttggtcaacgaaggcaggctgctgagtcacaccatgaaggaccac
ctggttcgtgtggctaatgaagctgaattcatcctcagccgacagaggactgaagacatt
cacaaacatgcagagtttgagtcgaactgtgcgcagtacgccgcggagaagcgagacgag
gagaaaatgtgcgaccacctgatccgagcagccaagtaccgcgaccatgtgaccgccacg
cagctcgtccagaagatagtgaacatcctgaccgacaaacacggagcctggggaagctcg
gccaaaagccggccgagggagttctggcgcctggactactgggaggacgatttaaggcgg
cgacgtcgcttcatcaggaacccctccggatccactcactcggaggctacgctcaaagca
gtggccgaacacgtggctgacatcagtgcatccgaggaagatattctcaaaggaaagcag
tccatcagaagtcaggctctgggaaatcaaaactctgagagtgagacgtcactcgacgga
gacgatgacactctgtcatctccagaggagaaggacctggagaattttacaggcccggta
aacctgagcaccagtgcccagctggtggctccggctgtggtggtgaaaggcaccctgtcc
atcaccccctcggagctctacttcgaggtggacgaagacgatccgagcttcaaggccatc
gatccaaagattttatcctatacagaaggtcttcatggaaaatggctgttcacggagatc
agagccgtcttttccagacgctacctactgcagaatacttctctggaaatcttcatggcc
aacagaacggcagtcatgttcaacttcccagatgcggccacagtcaagaaggtggtccac
agtcttcctcgtgttggggtgggcacgaactttggccttccacagaccagacgtatctct
ctggccacaccaaagcaacttttcaaggcatccagcatgacccagcgctggcaacgccgc
gagatatccaactttgattaccttattttcctcaacaccatctctggtcggacctttaat
gacctgaatcagtacccggtcttcccctgggtgatcaccaactacgactcagaggaactt
gacctcactctgcccagcaacttcagagatctgtccaagcccattggtgctctgaacccc
aagagagcagccttcttctcagaccgatatgagtcctgggaggatgatcaggtgccgaag
ttccactatggcacccactattccacctccagcttcaccatgatgtggctactgcgtatc
gaacccttcaccacattcttcctaaacttccaaggaggaaagtttgaccatgctgaccgc
accttctcctcagtcgcccgggcatggaggaactgccagagagacacctctgatgtcaag
gagctgatcccagagttttactacctccccgagatgtttgtcaacgccaacagttacaac
ctgggagtgatggaggaaggcgccatggtctctgatgtggagctgccaccttgggccaag
agcccggaggagtttgtgcgcaacaatcgactggctctggagagcgagtttgtgtcctgc
cagctccaccagtggattgatctgatctttggctacaagcagcaaggacctgaagccacc
agagctctcaatgtcttctattatttgacctacgaaggggccgtcaacctcagctccatc
accgaccccatgctccgagaggctgtggagtctcaaataaggagttttggacagaccccc
tgccagttgctcatcgagccacacccaccccgaagctcagccatgcaggtgaccccactg
atgtttacggagcagatgcagcaggatgttatcatggtgctgaagttcccatccaactct
cctgtgacccacgtagcagccaacacccaggcgggcctgacgtcaccggccatcatcacc
gtcactgcaaaccgcatcttcgctgtcaacaagtggtatggactgacaggtcatcagagc
tcaacggtgcaggaccagcagtaccaacttcctgtggaaattgaccctctgatagccagt
aacgtgggcagtcatcgccgtcagatctcagacctgctggatcaaagcattcagatcagc
tcgcagtgtttcatcatcacggccgacaaccgcttcatcctcctgtgcggcttttgggac
aagagcttccgggtttactccaccgactcaggcaaactgacgcagatcgtgttcggacat
cgtgacgtggtgacgtgtctggctcgctccgagtcgtacatcggaggagactgctacgtc
ctgtcaggctccagagacgccaccctgctgctgtggtactggaacgggaagcacaacagc
attggagagagcccgggcacagagtttaccacaccaagggccatcttgacgggccatgac
tgtgaagtgacgtgtgcgagtgtgtgtgcagagctgggtctcgtcgtcagcggctgcaaa
gagggtccttgtctgatccattccatgaatggggacctgctgcggaccctggagggcccc
gagcgctgcctgaggcctcgtctcatccagtcctccaccgagggacactgcatgatctac
tacgagaaggggcagttttgtaacttcagtgtcaacggcaaactgctcagacacatggag
gtggaagacagcatcaaggccatgtacctgagtcgggacggccagtacctgctgacgggc
ggagacggaggcgtggtctccgtctggcaggtccacaacttcaaacagctgttcacgtac
ccaggctgcgacgcaggaatccgctctatgaccatgtcccatgaccaaaggtgcatcatc
accggcatgtcctctggaagcatcgtgctcttctacaacgacttcaacagatggcaccac
gagtaccagacccgctactga
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integrated database retrieval system
