Pseudochaenichthys georgianus (South Georgia icefish): 117448705
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Entry
117448705 CDS
T09629
Symbol
lingo1a
Name
(RefSeq) leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 1
KO
K23533
leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pgeo04131
]
117448705 (lingo1a)
Membrane trafficking [BR:
pgeo04131
]
Endocytosis
Lipid raft mediated endocytosis
RhoA-dependent endocytosis
117448705 (lingo1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_8
LRR_5
LRR_4
I-set
LRR_1
Ig_3
ig
Ig_2
LRR_9
LRR_Zer-1
LRRNT
Ig_C17orf99
V-set
Motif
Other DBs
NCBI-GeneID:
117448705
NCBI-ProteinID:
XP_033941955
LinkDB
All DBs
Position
6:complement(37745757..37893042)
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AA seq
614 aa
AA seq
DB search
MAAREATGHSYLVAFWQPILILMLGAVLSGSTTGCPSRCECNVQERSVMCHRKKLMTVPE
GIPAETKLLDLSKNRIRTINPDEFAMFPNLENLELSENTISTIEPGAFNNLYGLRTLGLR
SNKLKLIQLGVFTGLSNLTQLDISENKIVILLDYMFQDLYNLRSLEVGDNDLVFISHRAF
HGLSSLEHLSLEKCNLSSVPTDAFTHLHNLITLRLRLLNINVIRDYSFKRLYRLKVLEIA
NWPYLDTMTPNCLYGLNLTSLTIANANLTTIPYVALRHLVYLRFLNLSYNPIHTIEGNKL
HDLLRLQEFHLVGGRLAMIEPYSFRGLNYLKILNVSGNTLTTLEESAFHSVGNLETLALY
DNPLACDCRLLWVFRRRWRLNFNRQQPTCASPEFVQGKEFKDFPDVLQPNYFTCRKSRIR
DRKAQQKYVDEGAIVHFACQAEGDPSPVIMWLSPQKKFITSKTIGRLSVLPDGTLEVRYA
QTQDNGTYACIASNAGGNDSSPAHLHIHSYSPDWPQRSNKTLAFISNQPAETGNGTRANA
PFPFDIKTLIIATTMGFISFLGVVLFCLVLLFLWSRGKGATKHNIEIEYVPRKSDAGMSS
STADAPRKFNMKMI
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
atggcggccagggaagcgactgggcacagctacctggtggctttctggcagcccattctg
atactgatgcttggcgccgtgctgtctggctcaactacaggctgcccatcccgctgtgag
tgcaatgttcaagagcgctctgtgatgtgccaccgcaaaaagctcatgacagttcccgag
ggcattcctgcagaaacaaaactgctggacctgagcaagaaccgcatcagaaccatcaac
ccagacgagtttgccatgtttcccaacctcgaaaacctggagctcagtgaaaacaccatc
tccaccattgaacctggagcattcaataacctttacggtctgcggacattagggctgcgt
agcaacaagctcaagctgatacagctcggggtcttcacaggcctgagcaatctcacacag
ctggacataagtgagaacaagattgtcatcctgttggactacatgttccaggatttgtac
aacctgcggtccttagaggtgggtgataatgaccttgttttcatctcccaccgagctttt
cacgggcttagtagccttgagcatctgagtcttgagaagtgcaacctgtcctccgtacca
acagatgcttttacacaccttcacaatttgatcacgctcaggctgcgtctcctcaatatc
aatgtgatacgggattattccttcaaacggctctaccggctgaaagtgttggaaatagcc
aattggccttatctggatacgatgactccaaactgcttgtatggattaaatctcacctcc
ctgaccattgcaaatgccaacctgacaacaattccttatgttgccctgcggcacttggtc
tatttgcgctttcttaatctctcctataaccctatccataccattgaggggaataagctt
catgaccttctgcgtctgcaggaattccacctggttggaggcagactggcaatgattgag
ccctactctttccgtggtctaaactacctgaagatcctaaatgtttctggaaacacccta
actactttagaggagtctgctttccattcagtcggcaacctcgaaacccttgccttgtac
gataaccccctggcctgtgactgcagactgttatgggttttccgacgacgctggagactg
aacttcaacaggcagcagcctacctgtgcctcccctgagtttgtccaaggcaaagaattc
aaagactttccagatgtcctgcagccaaactacttcacgtgtcgcaagtctaggattagg
gatcgcaaagctcagcagaaatatgttgacgagggagccattgttcatttcgcttgccaa
gcagagggagatccttctccagtgataatgtggctctctccgcagaagaagttcatcacc
tccaagacaattggaaggctttccgtgttgccagatggtaccctggaggtccgatatgcc
cagacccaagacaatggtacatatgcgtgtatagctagcaacgccggcggaaatgacagc
tcccctgctcaccttcacatccatagctactcgcctgactggccacaaaggtccaacaag
actttagccttcatctccaaccagcccgctgaaactggtaatggtacacgagccaatgcc
cctttcccctttgatattaagacgttgatcattgccactacaatgggcttcatctctttt
ctcggtgtcgtcttgttttgcctggtgctgctcttcctatggagtagaggtaaaggcgcc
acgaagcacaacatcgagatcgagtatgtgccacggaaatcggacgctggcatgagcagc
agcacagcggatgctcctcgcaagtttaacatgaaaatgatataa
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