Pseudochaenichthys georgianus (South Georgia icefish): 117448745
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Entry
117448745 CDS
T09629
Symbol
pcdh18a
Name
(RefSeq) protocadherin-18a isoform X1
KO
K16499
protocadherin delta 2
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
pgeo04515
]
117448745 (pcdh18a)
Cell adhesion molecules [BR:
pgeo04515
]
Cadherins
Protocadherins
117448745 (pcdh18a)
BRITE hierarchy
Motif
Pfam:
Cadherin
Cadherin_2
TMEM154
PAG
Cadherin_C_2
PepSY
Motif
Other DBs
NCBI-GeneID:
117448745
NCBI-ProteinID:
XP_033942011
EnsemblRapid:
ENSPGEG00000016384
LinkDB
All DBs
Position
1:11964539..11972711
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AA seq
1187 aa
AA seq
DB search
MQPGKMQGLFVTRMWKVVAVLAMATQHVTSKTLKYQIHEEQKVGTVIANLKEDVADVVAK
LPSSVSLRFRAMQRGGSSFLTVREQDGEISIRTKIDREKLCEKNLNCSIQFDVLTLPTEH
LQLFHVEVEVLDINDNAPLFARAVIPIDISESAAVGARIPLDSATDPDVGENALYTYALE
PNNFFKIDIQSRTDGAKYAELVVLRELDREVRSGYELKYTASDRGVPPRTGSTLLKISVS
DSNDNSPIFEKSSYVINLPENAPVGTLIIDLNATDADDGTNAKIVYSFSSHVSPKIMETF
KINPDSGRLTLIRRVDYEAVNSYDIDVQAQDMGPNSMPAHCKILVKLVDVNDNKPDISIN
LMSSQGNGDAAYISEASPLDTFVALVRVEDLDSGLNGEVDCKLHGQGYFKLQKSYENNYM
ILTNVSLDREKRSEFSLTVVAEDRGTPSLSTVKHFTVHVTDENDNPPRFEKGQYEIFKSE
NNAPGAYLTSIMATDPDLDNNGQVSYSILENSVHGSSISTYVTIDPSNGAIYALRTFDRE
DVSRITFVVLAKDAGKPPLVSNATVILNILDENDNPPVIVVPQLWNFTADVPASKFTEAG
HLVTAIRATDRDTGVNAELICSILSGNEEGFFMIDPRTCEIHANASLENFPHEHAELTVV
VRDQGRENLSAKAALKIILHENMENHVQVMDQGESSLDASLIIIISLGAICTVLLVIMVV
FAAHCNREKKDTRHSYNCRVAESTHQHHPKKPARQIHKGDITLVPTVNGTLPIRAHHRSP
SDTPPMDRAQMGSRQNHHSHQSLNSLVTISSNHIPESFALELAHATPPVEQVSQLLSMLH
QGQYQPRPSFRGNKYSRSYRYALQDMDKFSLKDSGRGDSEAGDSDCDMGRESPVDRLMLG
EGFSDLIHLEMHHRLHPAMRLCTDECRVLGHSDQCWMPPLTSPASCDYRNNMYIPGEESS
QQPQQLDDDESSVDSERRKSFSTFGKEPGSEEAGVPGDGSDACAAAGGGAGSLLTEMNSV
FQRLLPPNMDSYAECTETSPPSSSSTAERGSGRGGNIAGNHSNNTVPQDNRRGLLPGGKA
PAYPPGVAAWAANTHYLNPGSGSMGNNHVTPSPSSSSTSTSTSTNGQPPHLKWLPAMEEI
PENYEEDDFDGVFHQGGKRSESRHEPGMDASELVHEINKLLQDVRQN
NT seq
3564 nt
NT seq
+upstream
nt +downstream
nt
atgcaaccaggaaaaatgcaaggactatttgtgacaagaatgtggaaagttgtggctgtt
ttggcaatggcgactcaacacgtcaccagtaagacattgaaataccagattcacgaagag
cagaaggttggcacggttattgccaatttgaaagaagatgtcgcggatgttgtggcaaaa
cttccgagctccgtgtcgctgcgcttcagagccatgcagagggggggctcgtctttcctc
acggtgcgcgagcaggacggagaaatcagcatcaggaccaaaattgaccgtgagaaactc
tgtgaaaagaatctcaactgttctattcaatttgacgtgctgacgctccccacggagcac
ttgcagctttttcacgtcgaggtggaagtgttggacatcaacgataacgcacccttgttc
gcccgtgccgttatccccattgacatctctgagagcgcggctgtgggtgcgcgcattccc
ctggacagcgccacagatcctgatgtcggggaaaacgcactatacacgtatgccttagag
cccaacaacttctttaagattgatatccagtccaggactgacggggctaaatatgcagag
ctggtggtgctcagggagttggatcgggaggtgcgctccgggtatgaacttaaatacacg
gcttctgatcggggcgttcccccaagaacaggttcgaccctgcttaaaatcagtgtcagt
gactcaaacgacaacagcccaatttttgaaaagtcatcatatgtcataaatctcccagaa
aacgcacctgttggcacactgatcattgacctgaacgccactgacgcggatgacggcacc
aacgccaaaatagtctactcattcagcagtcacgtgtcccccaaaataatggagacattc
aagattaatcctgacagtggccgtctgactctcatcaggcgcgtggactatgaggctgtt
aactcgtatgacattgatgtccaagcacaggatatgggtcccaactccatgccagctcac
tgcaagatcctggtcaaactggtggacgtgaatgacaataaacctgacataagcatcaat
ctcatgtcctctcaagggaatggggacgcagcttacatatctgaggcttctcctttggac
acgtttgtagcgctagttagggtggaggacttggactctgggctgaatggtgaggtggac
tgcaagcttcacggtcaaggatatttcaaacttcagaaatcctatgagaacaactacatg
attttgacaaatgtgtccctggatcgagaaaagaggtcagagttcagtctaacagtggtg
gccgaggaccgagggacccctagtctctctactgtcaaacattttactgtgcatgtgact
gatgaaaatgacaaccccccacggttcgagaagggtcagtatgagatatttaaatcggaa
aacaatgcccctggagcgtatctgacctccatcatggccactgatcctgatctggacaac
aatggacaggtgagctactccatcttggagaactctgttcatgggagctccatctccacc
tacgtcactattgacccctccaatggcgcgatctatgctctgcgcacatttgatcgtgag
gacgttagtcgcatcacttttgttgtgctagccaaagacgcggggaaaccaccgctggtc
agcaacgccacggtaattctgaacattctggatgaaaacgacaaccctccggtcatcgtg
gtcccccagctgtggaacttcactgctgacgtgcctgcgtcaaagttcacagaggccgga
cacttagtaaccgctattagggcgactgatcgcgacaccggggtcaacgccgagctcatc
tgctccatcctcagtggcaacgaggaaggattcttcatgattgacccaagaacgtgtgaa
atccacgccaacgcaagtttggagaacttcccccatgaacacgctgagttgactgtggtg
gttagagatcagggtagggagaacctcagtgctaaggcggctcttaaaatcatcctccat
gagaacatggagaatcacgtccaggtgatggaccagggggagtcttccctcgacgcttcc
ctgatcatcatcatctccctgggagccatctgcaccgtgctcctggtcatcatggttgtg
ttcgccgcccactgtaaccgggagaagaaggacacgaggcactcgtacaactgcagggtg
gcagaatccacccaccagcaccatcccaagaagcctgcccgccaaatccacaaaggtgac
atcacccttgttcccacggtgaacggcacgctgccaatcagagctcaccaccgctcgccg
tcggacacgccccccatggaccgagcccagatggggagccggcagaaccaccacagccac
cagtcactaaacagcctggtgaccatctcgtccaatcacattccagagagcttcgccctg
gaactggcacacgcaactccaccagtggagcaagtctcacagcttctgtccatgctccat
cagggccagtaccagcccagacccagtttccgtggcaacaaatactcccgcagctacaga
tatgcattacaagacatggacaagttcagcctgaaggacagtggccgtggggacagcgag
gcgggggacagtgactgtgacatgggtcgggaatcccctgtggacaggctgatgctgggg
gagggcttttctgacctcatacacctcgaaatgcaccatcgactccacccagctatgaga
ctgtgcacggatgaatgtcgcgtcctgggacactctgaccagtgttggatgccccccctt
acctcgcctgcttcctgtgactaccgcaacaacatgtacatccccggggaggagtcctcc
cagcagccccagcagctcgacgatgacgagtcctctgtagattcggagcgccgcaagagc
ttctccactttcggcaaggagcccggcagcgaagaggcgggggtccccggagatgggagc
gacgcttgtgcggctgctggagggggggctggttccctcctcaccgagatgaactctgtg
ttccagaggctcctcccccctaacatggactcgtacgcagagtgcactgaaaccagcccg
ccttcgtcctcgtcgaccgctgagaggggaagcgggcgcggtggcaacatcgcaggtaac
cacagtaacaacactgttcctcaggacaaccgcagaggcttgttgccgggtgggaaagcc
cccgcttaccctccgggtgtggctgcatgggcggccaacacccactaccttaaccccgga
agtggaagtatgggaaacaatcacgtcaccccctctccttcctcatcctccacttccacc
tccacctccaccaatggacagccaccgcacctcaaatggctgccggccatggaggagatc
ccggagaattacgaggaagacgacttcgatggcgtcttccatcagggaggcaagcgaagt
gaaagccgccacgagcccggcatggacgctagcgagctggtgcacgagatcaacaagctg
ctgcaggatgtccggcagaactag
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integrated database retrieval system
