Pseudochaenichthys georgianus (South Georgia icefish): 117448961
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Entry
117448961 CDS
T09629
Symbol
smarca5
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5
KO
K11654
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 [EC:5.6.2.-]
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Pathway
pgeo03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
117448961 (smarca5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pgeo03021
]
117448961 (smarca5)
03036 Chromosome and associated proteins [BR:
pgeo03036
]
117448961 (smarca5)
Transcription machinery [BR:
pgeo03021
]
Eukaryotic type
RNA polymerase I system
Other transcription-related factors
NoRC (nucleolar remodeling complex)
117448961 (smarca5)
Chromosome and associated proteins [BR:
pgeo03036
]
Eukaryotic type
Chromatin remodeling factors
CHRAC complex
117448961 (smarca5)
RSF complex
117448961 (smarca5)
WICH complex
117448961 (smarca5)
B-WICH complex
117448961 (smarca5)
NORC complex
117448961 (smarca5)
BRF complex
117448961 (smarca5)
NuRF complex (fruit fly)
117448961 (smarca5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
SLIDE
HAND
Helicase_C
ResIII
DEAD
HDA2-3
Myb_DNA-binding
DBINO
ERCC3_RAD25_C
AAA_14
Motif
Other DBs
NCBI-GeneID:
117448961
NCBI-ProteinID:
XP_033942145
LinkDB
All DBs
Position
1:complement(38179937..38190176)
Genome browser
AA seq
1033 aa
AA seq
DB search
MSELLSCVEQREEPTEVPKPEAAEEKAESSDEGKESVSEVGADVQDATSSTKTKETGLGY
EEKVLTDRTNRFEYLLKQTELFAHFIQPAAQKTPTSPLKMKPGRPRMKNDEKQNLLSAGD
NRHRRTEQEEDEELLSESTKTTNVCVRFDDSPSYVKQGKMRDYQVRGLNWLISLYENGIN
GILADEMGLGKTLQTISLLGYMKHYRNIPGPHMVLVPKSTLYNWMNEFKRWVPSLRAVCL
IGSREQRNALIRDVLLPGEWDVCVTSYEMLIIEKAVFKKFNWRYLVIDEAHRIKNEKSKL
SEIVREFKTTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSSEDFDSWFDTNNCLGDTKL
VERLHTVLRPFLLRRIKADVEKSLLPKKEIKMYVGLSKMQREWYTKILMKDIDILNSAGK
MDKMRLLNVLMQLRKCCNHPYLFDGAEPGPPYTTDSHLVVNSGKMVVLDKLLPKMKQQGS
RILIFSQMTRVLDILEDYCMWKNYGYCRLDGQTPHEERQISINAYNEPNSPKFIFMLSTR
AGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKQVRVFRFITENTVEERIVER
AEMKLRLDSIVIQQGRLVDPGANKLAKDEMLSIIRHGATHVFASKESEITDDDIDAILEY
GERKTMEIKEKMANLGESSLRNFTVDTENSSVYKFEGEDYREKKKVITNWIEPPKRERKA
NYAVDAYFREALRVSEPKAPKAPRPPKQPNVQDFQFFPPRLFELLEKEILFYRKTIGYKV
PRNPEMPNSATLQKEEQGKIDEAEALTEEELEEKENLLQQGFTIWNKRDFNQFIKANEKW
GRDDIENIAREVEGKTPEEVMEYSAVFWERCNELQDIEKIMAQIERGEARIQRRISIKKA
LDSKIGRYKAPFHQLRISYGTNKGKNYTEEEDRFLICMLHKLGFDKESVYDELRQCIRNS
PQFRFDWFLKSRTAMELQRRCNTLITLIERENMELEEREKAEKKKRGPKNASAQKRKSDA
TPDGRGRRKKLKL
NT seq
3102 nt
NT seq
+upstream
nt +downstream
nt
atgtccgaactcctaagctgcgtggaacagcgggaagaaccgactgaagttccaaaaccc
gaagcagcggaggagaaggcagagtcttcagatgaagggaaagagtcggtctcagaggtt
ggggctgatgtacaagatgccacttcctctaccaaaactaaagaaactggtctggggtat
gaggagaaagtgctcacagaccggaccaacagatttgagtacctgctgaagcaaacagag
ttgtttgctcatttcatccaaccagccgcacagaagacccccacctccccgctgaagatg
aagccaggacgtcctcgcatgaagaacgatgaaaaacagaatctgctgtctgccggagac
aaccgacaccgccgcacagagcaagaggaggacgaagagcttctgagcgagagcaccaaa
actactaacgtctgcgttcgcttcgatgactccccctcctacgtcaaacaaggaaaaatg
agagactatcaggtccggggtctgaactggctcatatctttgtatgagaacggcatcaac
ggcatccttgccgatgaaatgggtttggggaagacgctgcagaccatttctctgctgggt
tacatgaagcattacaggaacatccctggtccccacatggtgctggtgcccaagtccacc
ctctacaactggatgaatgagttcaagagatgggtgccttcactgcgcgccgtctgcctg
atcggaagcagagagcagaggaatgccctgatcagagatgtgctgctgcccggagaatgg
gatgtgtgcgtcacatcctacgagatgctcatcattgaaaaggcagtgttcaagaagttc
aactggagatacctggtcattgacgaagcccacagaatcaagaatgagaaatcaaagctg
tcagagatcgtgcgagaatttaagaccaccaatcgtttgctgctgaccggaacccccctg
cagaacaacctccacgagctgtgggctctgctcaacttcctgctgcccgacgtctttaac
tcatcagaggactttgattcctggttcgacacaaacaactgcttgggtgataccaagttg
gtggaacgtcttcacactgtgctgcgtcccttcttgctccgtcgtatcaaagcggacgta
gagaagagtctgcttccgaagaaagagatcaagatgtatgtgggcctgagtaagatgcag
cgagagtggtacacaaagatcctgatgaaggacatcgacattctgaactcagcgggtaag
atggacaagatgcgtctgctgaacgttctcatgcagctgaggaaatgctgcaaccacccg
tacctgtttgacggggccgagcccggacccccgtacaccaccgacagccatctggtggtg
aacagcggcaagatggtggtgctggacaagctgctacccaagatgaagcagcagggctct
cgtatcctcatcttcagtcagatgacccgggtgctggacatcttggaggattattgcatg
tggaagaactatggctactgccgcctggatggccagacgccgcacgaggagagacagatc
tctatcaacgcatacaatgagcccaacagccccaagtttatcttcatgttgagcaccaga
gctggaggactgggtatcaacctggctacagctgatgtggtcatcctgtacgactcggac
tggaacccccaggtcgacctgcaggccatggaccgagctcacaggattggtcagacgaag
caggtgcgcgtgttccgcttcatcactgaaaacacggtggaggagaggattgtggagcgg
gctgagatgaaactgcgcctggactccatcgtcatccagcagggaagactggtggatcca
ggtgcaaacaagctggccaaagatgagatgctgtccatcatccgccacggcgccacacat
gtgttcgcctccaaagagagcgagatcacggacgatgacattgacgccatcctggagtac
ggggagaggaagaccatggagataaaggaaaagatggctaacctgggtgagagctcactg
aggaacttcaccgtggacacagagaacagcagtgtgtataagtttgaaggagaagattac
agagagaagaaaaaggtcatcaccaactggatcgagccgcctaagagagagaggaaagcc
aactacgctgtggacgcttacttcagagaggccctgagagtcagtgagcccaaagcacca
aaggctcctcgtccccccaagcagccaaatgtgcaggacttccagttcttccctccacgt
ctttttgagctcctagaaaaggaaatcctcttctacaggaagaccatcggctacaaggtg
ccccgtaatccagagatgccaaactctgccacgctccagaaggaggaacagggtaagatc
gacgaggcggaggcgctcacagaggaggagctggaggagaaggagaacctgctgcaacag
ggattcaccatttggaacaaacgtgacttcaaccagttcatcaaagccaacgagaagtgg
ggaagagatgatattgagaacatcgccagagaagtcgaggggaaaaccccagaggaagtc
atggaatactccgctgtgttctgggagcgctgtaacgagctgcaggacatcgagaagatc
atggcgcagatcgagagaggagaggccaggatccagaggaggataagcatcaagaaagca
ctggactcaaagatcggtcgctacaaggctcccttccaccagctgcgtatctcctacggc
accaacaaaggcaagaactacacggaggaggaggaccgcttcctcatctgcatgctccac
aagctgggcttcgacaaggagagcgtgtacgacgagctgcggcagtgcatccgcaactcg
ccgcagttccgcttcgactggttcctgaagtcccggacggccatggagctccagaggcga
tgcaacactctgatcacactgatcgagagagagaacatggagctggaggagagagagaag
gccgagaagaagaaacgcggcccgaagaatgcctcagcccagaaacggaagtcagacgcg
accccagatggccgtggacgcaggaaaaagttgaagttgtga
DBGET
integrated database retrieval system
