Pseudochaenichthys georgianus (South Georgia icefish): 117449156
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Entry
117449156 CDS
T09629
Symbol
hdac6
Name
(RefSeq) LOW QUALITY PROTEIN: histone deacetylase 6
KO
K11407
histone deacetylase 6 [EC:
3.5.1.98
]
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
pgeo01009
]
117449156 (hdac6)
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pgeo03019
]
117449156 (hdac6)
04131 Membrane trafficking [BR:
pgeo04131
]
117449156 (hdac6)
03036 Chromosome and associated proteins [BR:
pgeo03036
]
117449156 (hdac6)
Enzymes [BR:
pgeo01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
117449156 (hdac6)
Protein phosphatases and associated proteins [BR:
pgeo01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
117449156 (hdac6)
Messenger RNA biogenesis [BR:
pgeo03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
117449156 (hdac6)
Membrane trafficking [BR:
pgeo04131
]
Autophagy
Aggrephagy
Other aggrephagy associated proteins
117449156 (hdac6)
Chromosome and associated proteins [BR:
pgeo03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class II HDACs
117449156 (hdac6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
zf-UBP
zf-UBP_var
Motif
Other DBs
NCBI-GeneID:
117449156
NCBI-ProteinID:
XP_033942479
LinkDB
All DBs
Position
7:complement(3602739..3621419)
Genome browser
AA seq
1108 aa
AA seq
DB search
MQSGAGSPGSGKKSVRRSPRLSPQVSVKERRKERKRKGSSLQEAKSRGKDGEGAEEDEEE
LNDKLQTLDLSSQSAARGTGLVYSEIFTHHKNLWDSSHPECPDMSDVPSWRSCRDRSCCS
HCVTVEPREATEEELLLSHTKQYVDLMRSTQTMTESELQTLSEKYDSVYIHPESFQVCVK
GVGSVLQLVDQVMTSELRNGFAVVRPPGHHAQSDMSNGYCIFNNVAIAARYAQTRHAVRR
XGGVWVLIVDWDVHHGQGGIQYQFKDDPSVLYFSVHRYEEGSFLPHLSESDSRFVGSGRA
EGRNINLPWNKTGMTDADYIAAFQQLLLPVAYEFQPQLVLVSAGFDAAVGDEKGGMCVNP
QCFHVLTHMLMSLAEGRLVLALEGGYNLQSTAEGAAACVRALLGGACPFLTPPYAPSDSA
LQSISQTVSALYPHWASLQTLEGSRLAEGRVIRATANEKSTKHTEPPPSVAKTTGLVYDE
KMMEHLNLWDRHHPEQPQRIFKIFSKHQQLGLVGRCKRIPVRLATEEELSTCHSVQHIEQ
MKATAEMKPRDLHKLGLEFNSIFINNQSYQCALLAAGGCFSAVERILSGEVSNGVAIVRP
PGHHAEKDSPCGFCFFNTAAVTARHAQKISHDAPLRVLILDWDVHHGNGTQHMFEDDDSV
LYVSLHRYDNGSFFPSSLDAAPDRVGVSKGAGFNVNVAWSGGRMGDSDYLAAFHSVIMPI
ATEFNPGLVLVSAGFDAARGDPLGGYNMTPEGYAHLTHLLMSLAGGRVLHILEGGYNLSS
ISDSMAMCTSVLLGDPPPSLAMPLPPPHHNAVATINEVIRHHAPYWKSLRIRIPESVRVS
LPSPKHRGKRIFKGKGKKSEQGSTNKPPLPPTEPEKTTSNQTECGLELLTQGLAGLDICQ
TSANHTPAKSTEVGGARPKVRQSPEKVESSAVTPENSQSGDSTQPQDVAVAAPESVAPGD
KPASEEGAGPEEDGACGWSQPQTSLELTCGGQADTPLYVVDPLSWCPHLDVVKPLPPAGI
DIFQSCKDCGSEAENWICLTCYQVFCGRYVNEHMVTHGVVSEHPMVLSFCDLSVWCYLCE
AYVHNQILYEAKNSAHCAKFGEEIPPWS
NT seq
3327 nt
NT seq
+upstream
nt +downstream
nt
atgcagtctggtgcaggttctccgggatctgggaagaagtcagtcagaagatccccccgt
ctgtctcctcaggtctcagtaaaggaacggaggaaggagaggaagaggaagggaagcagt
ctgcaggaggcgaagagtagagggaaagatggagagggggcagaggaagacgaggaggag
ctgaacgacaaactgcagacactggatctgtccagccaatcagcagccagaggaacaggt
ctggtttactctgagatcttcactcatcataagaacctgtgggactccagtcatccagaa
tgtcccgacatgagtgacgtcccatcatggaggagctgcagagacaggagctgctgttct
cactgcgtcacagtggagcccagagaagctacagaagaagagctgctgctctctcacacg
aaacaatatgtggatctgatgaggtcgacgcagacgatgacagaaagtgaacttcaaact
ctgtcagagaaatacgactcggtgtacattcatcctgagtctttccaggtgtgtgtgaag
ggggtgggttcagtcctgcagctggtcgatcaggtgatgacctctgaactcaggaacgga
ttcgccgtcgtcagacctccaggtcatcacgctcagtctgacatgtccaacggttactgc
atcttcaacaacgtggcgatcgcagcgcgatacgctcagaccagacacgccgtccgcagg
taggggggggtgtgggtgttgatagtggactgggatgttcatcacggtcagggtggtatc
cagtaccagttcaaggacgaccccagtgtcctctacttcagtgtgcacaggtacgaggag
gggtcttttctgcctcacctgtcggagtctgacagtcggtttgtcggcagcggacgagct
gaaggcagaaacatcaacctgccctggaacaagacggggatgacagacgccgattacatc
gcagcttttcagcaactgctgctgcccgtagcctacgagtttcagcctcagctggtcctg
gtctcggctggattcgatgctgccgtcggagatgagaagggcgggatgtgtgtgaatcct
cagtgtttccacgttctgactcacatgttgatgagtttggcagaaggtcgacttgttctc
gctctcgaggggggttataacctacagtcgacagcagagggcgctgcagcgtgtgtcaga
gctctgctgggaggagcctgccctttcctgactccgccctacgctccgtctgacagtgct
ctgcagtccatctctcagacggtctcagctctgtatcctcactgggcctctctgcaaaca
ctcgaaggcagccgattggctgaggggcgtgtcatcagagcaacagccaatgagaaaagc
acaaagcacactgagccgcctccctctgttgccaagacaacaggtctggtttatgatgag
aagatgatggagcacctgaacctgtgggacagacatcaccctgaacagcctcagaggatc
tttaaaatcttctccaaacatcagcagctgggattggtcggtcgttgcaaacggatacca
gttcgcttagcaacagaggaggagctgtccacctgtcacagtgtgcagcacattgagcag
atgaaggccacagcagagatgaagcctagagatctgcacaaactgggtctggagtttaac
tccatcttcatcaacaaccagagctaccagtgcgctctgctggctgcaggaggctgcttc
agcgccgtggagaggatcctctcaggagaggtgagtaacggcgtggcgatcgtccgtcct
cccggtcatcacgcagagaaagactctccgtgtggtttctgtttcttcaacacggcagcg
gtcacagctcgccacgcacagaaaatatcccatgatgcaccgctgcgagtcctcatcctg
gactgggacgttcaccacggcaacgggacgcagcacatgttcgaggacgacgacagcgtc
ctgtacgtctcgctccatcgctatgacaacggatcgttcttcccgtcctcattggacgcc
gccccggacagggtgggcgtgtctaaaggggcggggtttaacgtcaacgtggcgtggagc
ggcgggcggatgggcgactccgactaccttgctgcctttcacagtgtcatcatgccgatc
gccaccgagtttaaccccggtctggttctggtgtcggccgggttcgatgcagcacgaggg
gatccactgggggggtacaatatgacgccggagggatatgcccacctgactcacctgctg
atgtcactggctggggggcgggtgctacatatactggagggaggttataacctgtcatcc
atctctgactccatggcgatgtgcacaagcgtgttgctaggagaccctcctccctctttg
gcgatgcccctcccccctcctcatcacaacgccgtggcaacgatcaacgaggtcatccga
caccacgccccctactggaagtcgctacggatacgcatcccagagtctgtccgggtgtcc
ctgccttccccaaagcatcgtgggaaacgtatttttaaaggaaaaggcaagaagtcagag
caaggcagcacaaacaaaccacctctgccccctacagaaccggagaaaacaacatccaat
cagacggagtgtggtctcgagctgctcacgcagggattggccggtttggacatttgtcaa
acttcagccaatcacactcctgctaaatccacagaagtgggcggggccaggccgaaggta
cgccaaagcccggagaaggtggagtcatctgcagtgacacctgagaacagccaatcaggt
gacagtacacaacctcaggatgttgccgtggcagctccagagtcggttgcccctggagac
aagcctgccagtgaagaaggggcgggaccggaggaggacggagcgtgtggttggtcgcag
cctcagacctctctggagctgacgtgtggaggacaggcggatacccctctctacgtggtg
gaccctctctcctggtgtcctcacctggacgtcgttaagcccctccccccggcaggtatc
gacatcttccagtcgtgtaaggactgtggctccgaggctgagaactggatctgtctcacc
tgctaccaggtgttctgcggtcgttatgttaacgagcacatggtgactcacggcgttgtg
tctgagcacccgatggtgctgagcttctgtgacctgtctgtgtggtgctacctgtgtgag
gcctacgtgcacaaccagattctgtatgaagctaagaactcagcgcactgcgccaaattt
ggagaggagattcctccatggagctga
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