KEGG   Pseudochaenichthys georgianus (South Georgia icefish): 117449168
Entry
117449168         CDS       T09629                                 
Symbol
col2a1a
Name
(RefSeq) collagen, type II, alpha 1a
  KO
K19719  collagen type II alpha
Organism
pgeo  Pseudochaenichthys georgianus (South Georgia icefish)
Pathway
pgeo04510  Focal adhesion
pgeo04512  ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:pgeo00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    117449168 (col2a1a)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    117449168 (col2a1a)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00536 Glycosaminoglycan binding proteins [BR:pgeo00536]
    117449168 (col2a1a)
Glycosaminoglycan binding proteins [BR:pgeo00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   117449168 (col2a1a)
SSDB
Motif
Pfam: Collagen COLFI VWC SNARE Amnionless VWC2L_2nd
Other DBs
NCBI-GeneID: 117449168
NCBI-ProteinID: XP_071059774
LinkDB
Position
7:complement(11240755..11270853)
AA seq 1469 aa
MRWRTHSSGTRCSEEAGGCIQDGQQYNDKDVWKPEPCRICVCDSGAVLCDEIICEEIKEC
ANPLIPSGECCPICPADASAPIETLGAQGQKGEPGDIADVVGPKGPLGPMGPSGEQGSRG
EAGAKGDKGNAGPRGGDGEPGTPGNPGPAGTPGTPGLGGNFAAQMAGGFDEKSGGAQMGV
MQGPMGPMGPRGPPGPSGAPGPQGFQGSPGEAGEPGPAGALGPRGPSGPSGKPGSDGDAG
KPGKAGERGPAGPQGARGFPGTPGLPGIKGHRGHPGLDGAKGETGAAGAKGESGSAGENG
ASGPMGPRGLPGERGRSGAAGSAGARGNDGLPGPAGPPGPLGPAGAPGFPGSPGSKGEAG
PTGGRGSEGAQGPRGEAGTPGSPGPSGASGNPGTDGIPGSKGSAGGAGIAGAPGFPGPRG
PPGPQGATGSLGPKGQSGDPGLPGFKGEAGPKGELGPIGPLGGPGPSGEEGKRGARGEPG
TAGPLGPPGERGAPGNRGFPGQDGLAGAKGALGERGVPGAVGPKGSGGDPGRTGEAGLPG
ARGLTGRPGDAGPQGKVGAPGSNGDDGRPGPPGPLGARGQPGVMGFPGPKGANGVAGKTG
EKGLVGRPGLRGLSGKDGETGSAGPSGPAGPAGERGEQGQPGPNGFQGLPGPSGAPGEGG
KPGDQGVPGEAGANGVSGPRGERGFPGERGGAGAQGLQGPRGIPGTAGSDGPKGAIGPSG
SAGSQGPPGLQGMPGERGTGGITGAKGDRGDNGQKGPEGAAGKDGGRGLTGPIGPPGPSG
PNGAKGETGASGPNGAGGARGAPGDRGEGGPPGPAGFAGPPGSDGQPGAKGELGESGQKG
DGGAPGPQGPSGAPGPVGPTGVSGPKGMRGAQGAAGATGFPGAAGRVGTPGPNGNPGAAG
PSGPAGKDGPKGVRGDAGLTGRQGDGGLRGPAGTHGEKGEAGEDGPPGPDGPSGAMGLGG
SRGIVGLPGQRGERGFAGLPGPSGEPGKQGSTGGGGDRGPPGPVGPPGLSGPSGEIGREG
TAGSDGPPGRDGSAGIKGERGNTGPAGAPGAPGAPGSTGPVGPLGKQGDRGEGGAQGPAG
PSGPAGARGMAGPQGPRGDKGESGETGERGQKGHRGFTGLQGLPGPPGPNGDSGSAGPAG
PNGAKGPGGPSGPAGKDGSNGTPGPIGPPGPRGRSGESGPAGPPGNAGPPGPPGPPGPGI
DMSAFAGMGQTEKSPDPLRYMRADEASSSLRQHDVEVDSTLKSLNNQIENMRSPDGTQKN
PGRTCRDLKLCHPEWKSGTYWVDPNMGSIADAIMVFCNMETGETCVKPSIAEVPKKNWWT
SKSKDRKHVWFGETMNGGFHFSYADDGPVANAGSIQLTFLRLLSTEATQNLTYHCKNSVA
YMDQASGNLKKALKLQGSNEVEIRAEGTSRFTYNVMEDGCKTHTDRWAKTVIEYKTKKTS
RLPFVDIAPMDIGGADQEFGVEVGAVCFL
NT seq 4410 nt   +upstreamnt  +downstreamnt
atgaggtggcgtactcactccagcgggacccgatgctcagaggaggcaggtggctgcatc
caggacggccagcagtataatgataaggatgtgtggaagcccgagccgtgtcgtatctgt
gtgtgcgacagcggagcggttctgtgtgatgagataatctgcgaggagatcaaagaatgt
gccaaccctctcatcccatctggagagtgctgtcccatctgccctgctgatgccagtgcg
cccattgagacactcggtgctcagggccagaaaggagaaccaggagacattgccgatgtt
gtaggaccaaaaggaccactgggcccaatgggcccctcaggtgagcagggatcacgcgga
gaagctggcgctaagggtgataagggaaatgcaggacctcgtggaggagatggcgagccc
ggcacccccggaaaccccggacccgccggcacacctggaacaccaggacttggagggaac
tttgctgctcagatggctggaggttttgatgagaagtctggaggcgctcagatgggtgtg
atgcagggaccaatgggtcctatgggtcctcgtggcccccccggaccaagtggagctcct
ggcccacaaggtttccaaggatcccctggagaggctggagagcccggaccagctggcgca
ttgggaccacgtggaccatctggaccttctggcaaacctggaagcgatggtgatgctggc
aaacctggcaaagctggtgagcgtggacctgcagggcctcagggagctcgtggattccct
ggaactcctggacttcccggaatcaaaggacacagaggtcatcctggtctggatggagct
aagggagaaactggagccgctggagccaagggagagtctggttctgctggagagaacggc
gcctccggacccatgggaccccgtggtctgcccggtgagaggggtcgctctggagctgct
gggtctgctggtgcccgtggtaatgatggtctgcccggtcctgctggtcctcctgggcct
cttggtcctgctggagctcccggtttcccaggatccccaggatctaagggagaagctggt
cctactggaggccgtggatctgaaggagcacagggacctcgcggagaggccggcaccccc
ggatctcctggaccctctggtgcatctggtaaccctggaactgatggtattcctggatct
aaaggatctgctggtggtgctggtattgctggtgctcctggtttccccgggccccgtggc
ccccccggacctcagggcgctacaggatctctgggaccaaagggacagtctggagaccct
ggtcttcctggattcaaaggagaggctggacccaaaggagagcttggccctattggtccc
ctaggtggccctggaccctctggtgaagaaggaaagagaggagcaagaggagagcctggc
acagccggacccctcggacccccaggagagagaggagctcccggtaaccgtggtttccca
ggacaggatggtcttgctggagctaagggcgcccttggcgagcgaggtgttcctggtgct
gttgggcccaaaggtagcggcggagaccccggacgcacaggagaggctggtctgcccgga
gccagaggtcttactggtcgccccggagatgctggacctcaaggcaaagttggagcccct
ggatctaatggagatgacggtcgccccggaccccccggccctctgggagcccgtggacag
cccggcgtgatgggattccccggaccaaagggagccaatggtgtagctggaaagacagga
gagaagggtcttgttggtcgtcctggactgagaggtctttctggaaaagatggtgagact
ggatctgctggaccttccggccctgctggacccgctggagagagaggagagcaaggacag
cctggacccaatggattccagggtctgcctggacccagtggggccccaggagagggtgga
aagcccggagaccagggagtccctggagaggccggagctaacggtgtttctggacccaga
ggtgagcgtggtttcccaggagagagaggaggtgctggagctcagggtctgcagggacct
cgtggaatccctggtaccgctggaagtgatggacccaagggagccattggaccatctggt
tctgctggatctcagggaccccccggcctgcagggtatgcccggagagagaggaactggt
ggcatcactggagccaagggagacagaggtgacaacggccagaagggacctgagggagct
gctggaaaggacggtggtagaggtttgaccggtcccattggtcctcctggcccatccgga
cccaacggcgccaagggtgagactggagcttcaggacccaatggtgctggcggtgcgcgt
ggtgctcctggtgaccgtggagagggcggtcctcctggccctgctggtttcgctggacct
cctggttcagacggtcagcctggtgccaagggagagcttggagagtctggacagaaagga
gatggcggtgctcccggacctcagggaccctctggagcccctggacctgtgggacccacc
ggtgtatctggacctaaaggaatgcgcggtgctcagggcgctgctggcgctactggtttc
cccggtgctgctgggagagttggaactcctggtcccaatggtaaccccggtgctgctggt
ccttctggcccggctggtaaagacggacctaagggcgttcgtggtgatgccggtctcaca
ggaagacagggagacggtgggctccgtggacccgcaggaacacatggagagaagggagaa
gctggagaggatggacctcctggtcccgatggaccttcaggagctatgggtctgggtgga
tctcgtggtatcgtaggtctgcctggtcagcgtggagagagaggtttcgctggtctccct
ggaccttctggagagcctggtaaacaaggatccactggtggtggtggcgaccgcggaccc
cctggacctgtgggacccccaggactgagtggaccttctggagagattggacgagagggt
accgctggatcagatggacccccgggtagagatggatctgctggaatcaagggagagaga
ggaaacaccggacccgctggtgcccctggagctcctggagcccccggatccaccggacct
gtcggacccctcggaaagcagggagacagaggagagggtggcgctcaaggacctgcagga
ccatctggccccgcaggagcccgaggaatggctggaccccaaggaccccgtggagacaag
ggagagtctggtgagactggagagagaggacagaagggtcaccgtggattcactggactg
cagggtctacctggacctcctggccccaacggagactctggatccgccggacctgccgga
ccaaacggagctaagggacctggtggaccatctggacccgctggcaaagacggatcaaat
ggaacgcccggccccatcggaccccctggacctcgtggacgttctggagaaagcggccct
gctggtcctcccggaaacgctggacccccaggcccccccggtcctcccggccccggcatc
gacatgtctgccttcgccggtatgggtcagactgagaagtcccccgatcctctgaggtac
atgagggccgatgaggcctccagctccctgaggcagcacgacgttgaggtggattccact
ctgaagtccctcaacaaccagatcgagaacatgcgcagccccgacggcacccagaagaac
cccggccgcacctgcagagacctgaagctgtgccaccccgagtggaagagcggaacctac
tgggtggaccccaacatgggcagcatcgctgatgccatcatggtgttctgcaacatggag
actggagagacctgcgtgaaaccaagcatcgccgaggtgccaaagaagaactggtggaca
agcaagagcaaggaccgcaaacacgtctggttcggagagaccatgaatggaggattccac
ttcagctacgctgatgacggccctgttgccaacgctggcagcattcagctgaccttcctg
aggctcctgtccacagaggcaacccagaacctcacctaccactgcaagaacagcgtggcc
tacatggaccaggcctctggcaacctgaagaaggctctgaagctgcagggctccaacgaa
gtggagatccgcgccgagggcaccagtcgcttcacttacaacgtgatggaggatggctgc
aagacacacacagatcgatgggccaagaccgtcatcgagtacaaaacaaagaaaacctcc
cgtctgccattcgtggacattgctcccatggacatcggaggagcggatcaggagttcgga
gtggaagtaggcgcagtctgcttcttgtaa

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