Pseudochaenichthys georgianus (South Georgia icefish): 117449244
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Entry
117449244 CDS
T09629
Symbol
ybx1
Name
(RefSeq) LOW QUALITY PROTEIN: Y-box-binding protein 1
KO
K09276
Y-box-binding protein 1
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pgeo03000
]
117449244 (ybx1)
03019 Messenger RNA biogenesis [BR:
pgeo03019
]
117449244 (ybx1)
03041 Spliceosome [BR:
pgeo03041
]
117449244 (ybx1)
Transcription factors [BR:
pgeo03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
Cold-shock domain factors, YB-1/DbpB-like
117449244 (ybx1)
Messenger RNA biogenesis [BR:
pgeo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Other mRNA localization factors
117449244 (ybx1)
mRNA cycle factors
Common to processing body (P body) and stress granule
117449244 (ybx1)
Spliceosome [BR:
pgeo03041
]
Common components
Common spliceosomal components
General mRNP proteins
117449244 (ybx1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CSD
OB_RNB
S1CSD-TOTE-2
Cytomega_TRL10
Motif
Other DBs
NCBI-GeneID:
117449244
NCBI-ProteinID:
XP_033942672
LinkDB
All DBs
Position
7:complement(25940217..25944834)
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AA seq
371 aa
AA seq
DB search
MRRTFGRVPEQEHSPAHHLTLPSSIGNGSGKRKAESPKAVAPTTAGPGYHLAPGNIAESR
RRQKPLPTSSNHEQRGRDTTAARCRCRCGEPIQPGSRSFRGDKKVIATKVLGTVKWFNVR
NGYGFINRDDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPE
GSAVQGSKYAADRNRFRRYPRRRGPPRAGEYPDNYQSDGEGEPSNGGREKGSRDGGESAP
EGESQPQQRRPAYPGRRRYPPYFGGEGDESQGGPDQGKQPARQSYYRGFKPRAPPRPRPA
QEGEEDKENQGGEGSQNQQPRQRRYRRNFNYRRRRPQAGDKPGPENKEAKTGGDPPAEKT
SAPEAQQGGAE
NT seq
1116 nt
NT seq
+upstream
nt +downstream
nt
atgcgaagaacatttgggcgggtccctgagcaggaacattccccagcacaccatctcact
ctgcccagttcgatcggcaacgggagcggaaagaggaaagcagagagccccaaggcagta
gcccccaccaccgccggcccaggttaccatctagcaccgggaaacatagcagagagccgc
cgccggcagaagccattaccaaccagtagtaaccatgagcagcgaggccgagacacaaca
gccgcccgatgccgctgccgatgcggagagcccatccagcccggcagccgaagcttccgc
ggtgataagaaggtcatcgcaactaaagtcttgggtacagtcaaatggttcaacgtcagg
aatggatatggtttcatcaatagggatgatacaaaagaggacgtttttgtacaccagaca
gccatcaaaaagaacaacccgagaaaataccttcgcagtgttggagatggagaaactgtg
gagtttgacgtagttgagggagaaaagggagccgaggcggcaaatgtcaccggcccagaa
ggcagtgcagtccagggtagtaagtatgctgctgatcggaaccgcttcaggcgctatccc
cgaagaaggggccctccccgcgctggagaatatccagacaactaccagagtgacggagag
ggtgagccaagcaacggaggtcgtgaaaaaggcagccgagatgggggagagagtgcccct
gaaggagaatcccagccacagcagcgcagacccgcttatcccggcagacggcgctaccct
ccatactttggaggcgagggcgacgagagccagggaggtcctgatcaaggcaaacaacca
gcgaggcagagctactacagaggcttcaaaccaagggctccaccccgccccagaccggca
caggaaggcgaggaggacaaggagaatcagggaggcgaaggtagtcaaaaccaacagccc
cgccagcgtcgctatcgccgcaacttcaactatcgccgcagacgtccacaggctggcgac
aaacccggcccagaaaacaaggaggccaagacaggaggtgacccacctgcagagaaaacg
tccgctcccgaggcccagcagggtggggctgagtag
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