Pseudochaenichthys georgianus (South Georgia icefish): 117449307
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Entry
117449307 CDS
T09629
Symbol
smc1a
Name
(RefSeq) structural maintenance of chromosomes protein 1A
KO
K06636
structural maintenance of chromosome 1
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Pathway
pgeo04110
Cell cycle
pgeo04114
Oocyte meiosis
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
117449307 (smc1a)
04114 Oocyte meiosis
117449307 (smc1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pgeo03036
]
117449307 (smc1a)
Chromosome and associated proteins [BR:
pgeo03036
]
Eukaryotic type
Sister chromatid cohesion proteins
Cohesin complex
117449307 (smc1a)
Meiosis-specific proteins
Cohesin complex and associated proteins
117449307 (smc1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMC_N
SMC_hinge
AAA_23
AAA_21
AAA_15
AAA_29
SlyX
Mce4_CUP1
Motif
Other DBs
NCBI-GeneID:
117449307
NCBI-ProteinID:
XP_033942801
LinkDB
All DBs
Position
7:complement(20294003..20305994)
Genome browser
AA seq
1230 aa
AA seq
DB search
MGYLKLIEIENFKSYKGRQIIGPFHKFTAIIGPNGSGKSNLMDAISFVLAEKTSNLRVKT
LKDLIHGAPVGKPAANRAYVSMVYQEDNGEERNFTRGIIGSSSEYRINSKVVGLPEYSEE
LEKLGILIKARNFLVFQGAVESIAMKNPKERTALFEEISRSGELAQEYDRRKKEMVKAEE
DTQFNYHRKKNIAAERKEAKQEKEEAERYQRLKDEVARASVQLQLFKLYHNETEIEKLNK
ELAQRNKEIDKDRKKMDNVEEELKDKKKELGRLMREQQTIEKEIKEKDSELNQKRPQYIK
AKENTSHKIKKLEAARKSLQNAQKMYKKRKGDMDELDKEMQAVDSTKQEFEERMEEEAQS
QGQDLTLEENQVKQYHRLKEEASKRAATLAQELEKFNRDQKADQDRLDLEERKKVETEAK
IKQKIREIEENQKRIEKLEDYITTSRQSLDEQKRMEEELTEEVEGAKRRIDEINTELNQV
MEQLGDARIDRQENSRQQRKAEIMESIKRLYPGSVYGRLIDLCQPTQKKYQIAVTKVLGK
NMDAIIVDSEKTGRDCIQYIKEQRGEPETFLPLDYLEVKPTDEKLRELRGAKLVIDVIRY
EPPHIKKALQYACGNALVCDNVEDARRIAFGGPYRHKTVALDGTLFQKSGVISGGASDLK
AKARRWDEKAVDKLKEKKEKLTEELKDQMKAKRKEAELRQVQSQAHGLQMRLKYSQSDLE
QTKTRHLSLNMQEKSKLESELANFGPRINDIKRIIHSREKEITDLQDRMNLVEDEVFIEF
CKEIGVRNIREFEEEKVKRQNEIAKKRLEFETQKTRLGIQVDYEKNQLKEDQEKVMMWEQ
TVKKDDAEIERLKKEEHRHMKIIDETMAQLQDLKNQHLTKKSEVNDKNHDMEEIRKKLGG
ANKELTQLQKEVTAIETKQEQKRSDRHNLLQACKMQDIRLPLRSGTMDYMSQGEGSSQPE
ESNSQRTSSTVLAKEALIEIDYGILTEDLKDALSEEEFKGETNTLQQRLNEQQSILQRIS
APNMKAMEKLESVRDKFQETSDEFEAARKRAKKAKQAFEQIKKERYDRFNNCFESVATNI
DEIYKALSRNSSAQAFLGPENPEEPYLDGINYNCVAPGKRFRPMDNLSGGEKTVAALALL
FAIHSYKPAPFFVLDEIDAALDNTNIGKVANYIKDQSVHTQAIVISLKEEFYTKADSLIG
VYPEQGDCVISKVLTFDLSVYPDANPNPNE
NT seq
3693 nt
NT seq
+upstream
nt +downstream
nt
atgggttatttaaaactgatcgagatcgagaactttaagtcgtataaaggaagacagatc
attggaccttttcataagttcacagctatcatcggacccaatggatctggaaagtccaac
cttatggatgccatcagcttcgtgttggcagagaagaccagcaacctgcgagtgaagact
ctgaaggatctgatccatggagcacctgtagggaagcctgctgcgaacagagcctatgtc
agtatggtgtaccaggaggataatggagaggagcgcaacttcacaaggggaatcattggt
tcctcctctgagtaccgaatcaacagcaaggtggtgggcctgcctgaatacagtgaagag
cttgagaaacttggcattctgatcaaggctaggaacttcctcgtcttccagggagctgtg
gagtctattgccatgaagaaccctaaggagcgaacagctctgtttgaggaaatctctcgg
tctggagagctggcccaggagtacgaccgcaggaagaaggaaatggtgaaagcagaggag
gacacacagttcaattaccatcgtaagaaaaacattgctgctgagcgcaaagaagccaag
caagagaaagaggaggctgagcgttaccagcgtttgaaagatgaggtggccagggctagt
gttcagttgcagctctttaagctgtaccacaatgagactgagattgagaagctgaacaaa
gagctggcccagcgcaacaaggagatcgataaggaccgcaaaaagatggacaatgtggag
gaggagctgaaggacaagaagaaggagctgggccgactgatgagagagcagcagacaatt
gagaaagaaatcaaagaaaaagactctgagttgaaccaaaagaggccgcagtacatcaag
gcaaaagaaaacacctcacacaagatcaagaagctcgaggcagcacgcaagtctttgcaa
aatgcccagaagatgtacaagaaacgcaagggggacatggatgagctggacaaagagatg
caggcggtggactcgaccaagcaagagtttgaggagcggatggaggaggaggcgcagagc
cagggccaggacctcaccctggaagagaaccaggtcaagcagtaccatcgtctgaaggag
gaggccagtaagcgagctgccaccctggctcaggagctggagaagttcaatcgcgaccaa
aaggccgaccaggaccgcctggacttggaggagaggaagaaagtagagacagaggctaaa
atcaaacaaaagatccgtgaaattgaggaaaaccagaaacgtattgagaaattagaggat
tatatcaccaccagcaggcagtcactggatgagcagaagcgcatggaggaggagctgacg
gaggaggtggagggtgccaaaaggagaattgatgagatcaacacagagcttaaccaggtg
atggagcagctgggagacgccagaatcgacagacaggagaacagtcgccagcagcgcaag
gcggagatcatggagagcatcaaaagactctaccctggctctgtgtatggtcgtcttatt
gacctgtgccagcccacccagaagaagtatcagattgctgtgaccaaagtgttgggcaag
aacatggacgccatcatcgttgactcagagaagacgggcagagattgtattcaatacatc
aaggagcagagaggagagcccgagaccttccttcctctcgactacctggaggtgaaacca
acagatgagaagctgagagagcttcgaggagccaaactggtgattgatgtgatccgctat
gagcctccacacatcaagaaagccttgcagtatgcctgtggcaacgccctggtctgtgac
aacgtagaggatgcacgaaggattgctttcggagggccatacagacacaagacggtagcc
ctcgatggaactctgttccagaagtctggagtcatctctggaggagccagtgacctgaag
gccaaggccaggcgctgggatgagaaggcagtcgacaagctcaaggagaagaaagaaaaa
ctcactgaagagctcaaggaccaaatgaaggccaagaggaaggaggcggagctgcgtcag
gtgcagtctcaggcccacggtctgcagatgagactcaagtactcccagagtgatctggaa
cagaccaagacccgccacctctccctcaacatgcaggagaaatctaagctagagagtgag
ttggcaaactttggccctcgcatcaacgacatcaagaggatcatccattcccgggagaag
gagatcaccgacctgcaagaccgcatgaacctggtggaggatgaggtgtttattgaattc
tgtaaggagattggagtgaggaatatcagagagtttgaggaggagaaggtgaagaggcag
aatgagattgcaaagaagcgtcttgagtttgagacgcagaagacccgtctgggtatccag
gtagactacgaaaagaaccagctgaaggaggaccaggagaaagtcatgatgtgggagcag
actgtcaagaaagacgacgctgaaatagaacgactaaagaaggaggagcacagacacatg
aagatcattgatgagacaatggcccaactccaggacctgaagaaccagcacctcaccaag
aagtctgaagtcaacgataagaaccatgacatggaggagatccgcaaaaaactgggtggc
gccaacaaggagttgactcagctccagaaagaggtcacagccattgagaccaaacaagag
cagaagcgcagcgatcgtcacaacttactgcaagcctgcaaaatgcaggacatccggttg
cctctgcgatcaggaacaatggattatatgagccagggagaggggagctcccagccagaa
gagtccaacagccagaggacgtccagcactgttctggccaaagaggctctcatagagatc
gactacggtatcctgactgaagaccttaaggatgcactgtcggaggaagagttcaagggc
gagaccaacacactgcagcagcgtttgaacgagcagcagagcatcctccagaggatcagt
gcacccaacatgaaggccatggagaagctggagagcgtccgggacaagttccaggagacc
agtgatgagtttgaggctgctcgtaagagagccaagaaagccaagcaagcctttgagcag
attaagaaggagaggtatgatcgcttcaataactgctttgagtctgtcgccaccaacatc
gatgagatctacaaggccctctcacgcaacagcagtgcccaggctttcctgggcccagaa
aaccccgaggagccatacctggacggtattaactataactgtgtggcccctggaaagagg
ttcaggcccatggacaatctgtctggaggagagaagactgtcgctgccctggctctgctc
tttgctattcacagctacaaacccgcgcccttctttgtcctggatgagattgacgctgct
ctggataacactaacattggcaaggtggccaattatattaaagaccagtcggtgcacacg
caggccatcgtcatttctctgaaagaggagttctacaccaaggccgactcactcatcggt
gtttatccagagcaaggagattgtgtcatcagcaaagtgctgacctttgacctctccgtg
tatcctgacgccaaccccaatcccaatgaatag
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