Pseudochaenichthys georgianus (South Georgia icefish): 117449362
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Entry
117449362 CDS
T09629
Symbol
calcoco1a
Name
(RefSeq) calcium-binding and coiled-coil domain-containing protein 1
KO
K25828
calcium-binding and coiled-coil domain-containing protein 1
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pgeo03021
]
117449362 (calcoco1a)
04131 Membrane trafficking [BR:
pgeo04131
]
117449362 (calcoco1a)
Transcription machinery [BR:
pgeo03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
Others
117449362 (calcoco1a)
Membrane trafficking [BR:
pgeo04131
]
Autophagy
ER-phagy
ER-phagy recepters
117449362 (calcoco1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CALCOCO1
SKICH
Csm1_N
WD40_alt
Motif
Other DBs
NCBI-GeneID:
117449362
NCBI-ProteinID:
XP_033942894
LinkDB
All DBs
Position
7:19496220..19514400
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AA seq
652 aa
AA seq
DB search
MENTWQVEFRNVGCSYFPQSRVDCHYTLSSQHNWASNDWIGLFKVGWLSVKDYHTFVWAL
APADYLEGMDVNCCVHFQASYLPKTSSQDYEFVYIDAKGEVCSRSSTFSFCAPKPLEDLV
TFEEEPHGEEGGTGMLLVVPRAELLQSRLQECLRERAELLQAQEAENKHREKEMEDYKRA
REAWDRRRRGLESETARLKDELKQSQGMLEEMETEHNEKQAFGESLAQEKSALLDAREAS
KVRIKELEEDMKTLTQRAVERETELERMKERVKRAGAQKNEEDSEKKSLQTKLEQTEGEL
RSLSKEFQVLRTSLAQRDTSVLQLQNSITTLTQKLTTAHRKEAENEATLKEMWSLRERLN
MSERAAEGLKSDLNAMVAQRDHGQAELHQARLQAAQLTLQLADSSLAMREGRARWTQERQ
HLQRISEKNHESLEKYNAEMQKMEERLQDERMERVKLEVELGREKDCNRVQLGETRRELQ
ELKASLRVAQKEKEQILAEKQELMEYICQLEQKMGTMVRAKWSAAPIASTGRPGSALSDS
EDENPEALQPLRPARPLGHYRLCEQGQSNFLLLAPPPSSPREAESCAVVINQPAPLSSPH
QADADTLPHSSDSEEEADTLQCGRLSSEEERALLLPEHTATVISDLADTSLW
NT seq
1959 nt
NT seq
+upstream
nt +downstream
nt
atggaaaacacttggcaggtcgagttcagaaacgtgggctgcagttacttccctcagagc
agagtcgattgccactacacactgagctcacagcacaactgggccagcaatgactggata
ggactcttcaaggtgggatggctgtcagtgaaggactaccacacctttgtttgggcactg
gccccggctgactatctagagggcatggatgtcaactgctgtgtgcacttccaggcctcc
tacctacccaagaccagctcccaagattatgagtttgtatacatcgacgcaaagggggaa
gtttgctcccgcagctccacatttagtttctgcgctccaaagccccttgaggatctggtg
acctttgaggaggagccccatggtgaggaaggaggcacaggcatgctgctggtagtgccc
agggctgaactgctgcagagtcgactgcaggaatgtttgcgagagcgcgctgaactgctg
caggcgcaggaagcagaaaacaagcacagggagaaagagatggaagattacaagagggcc
agggaggcctgggacagacgacgcagagggctggagagtgaaaccgccaggctgaaggac
gagctgaagcagagtcaagggatgctagaggagatggagacggagcacaacgagaagcag
gcttttggagaatcactagcccaggagaaaagtgctttattggatgcgagggaggcgagc
aaagtgagaatcaaagagctggaggaggatatgaaaaccctgacacagagagccgtggaa
agagagacagagttggaaaggatgaaggaaagagtaaagagggcaggagctcagaaaaat
gaagaggatagtgagaaaaagagcctgcagaccaagcttgaacagacagaaggtgaactc
cgaagtctgtcgaaggagtttcaggtgctgaggacttcgctggctcagagagacacgagt
gttctgcagctccaaaacagcatcaccaccctcacccagaaactcaccactgcacacagg
aaagaggcagagaacgaggcaacactgaaggagatgtggagcctgcgggagcgtctgaac
atgagcgagcgcgctgcagagggcttaaagagtgatctaaatgccatggtggcccagagg
gatcatgggcaggcggaattgcatcaggctcgtctgcaggctgcacagctcacacttcag
cttgctgattccagtctggccatgagagagggaagagcccgctggacccaggagaggcag
catctccagcgcatttcagagaagaaccacgagagtctggagaaatacaatgctgagatg
cagaagatggaggagaggctgcaggacgagaggatggagagagtgaagctggaggtcgag
ctcggcagggaaaaggattgcaaccgggttcagctgggggaaacccgcagggagctccag
gagctgaaggccagcctgagggtcgcccagaaagagaaggagcagatacttgcagagaaa
caggagttgatggagtacatctgtcagctggagcagaagatgggaacaatggtcagagcc
aagtggagtgctgccccgattgcctctacagggcggcctggtagtgcgttatccgactct
gaggacgaaaacccagaggctctgcagcccctccgcccagcaagacctctgggtcactac
aggttgtgtgagcagggccagtcaaacttcctgctccttgccccccctccttcctcccca
agggaggcagagagttgtgcggtggtcatcaaccagccagccccgctctcctcgccacac
caggccgacgctgacactttgccgcacagctctgattcggaggaggaagctgatacactt
cagtgcggaaggctcagctctgaagaggaaagagcacttttgctgccagagcacactgcc
actgttatcagtgatctggccgacacctcgctatggtaa
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