Pseudochaenichthys georgianus (South Georgia icefish): 117449412
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Entry
117449412 CDS
T09629
Name
(RefSeq) collagen alpha-1(XX) chain-like
KO
K24357
collagen type XX alpha
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
fn3
VWA
Collagen
Pur_ac_phosph_N
Ig_DSCAM-DSCAML_C
FN3_Tor_3rd
VWA_2
Motif
Other DBs
NCBI-GeneID:
117449412
NCBI-ProteinID:
XP_033942969
LinkDB
All DBs
Position
7:37360911..37402377
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AA seq
1584 aa
AA seq
DB search
MSPHLHATSSSLWLMLCFLLSVFLLLSPGVYGQGRLKLTVLSEDRLQMKWKEADGPVQGY
KVRVKPISEVPQPELMLTTTRGRATVAGLDSGQEYALQVLVLNGTTERLLAKRRFTMEGL
RDEEMIRSGSREQKKKMLPGGSGSGDLDDVTEALIGRPAVLYPDPTNNPAAAAPTTEPPA
IETPSQLPESAPENTPKEKRKRKNGKERDRSKGENKEEQGTTQGKAAKEKSRKTPTPTQP
VTGMSPRKPFECETDAAADIVLLVDGSWSIGRTNFRRVRDFLEGLMTPFNIGPDHIQIGL
TQYSGDPRTEWHLNNFTTKEQLLEAVRNFRYKGGNTFTGQALLHVMEENMRPEAGARSAT
PFFLVLLTDGKSQDDAIAAADRLKNAGVEIIAVGVKNADEAELRQVASEPVDLNVYNVND
FPLLSKLVSRLVHILCGRIEDRGISKRMEPGPTVDPALSYPSPSDLRFSQLGSREVQLHW
TNPAEAVQQFRVVYHSAEGQSPQEVVLGGSESTALLEGLSSQTLYHVSIFPVYENNVGLA
LRGTVTTLPLATPANLEVTPSSHSTLQVSWGAAPRATQYMILYSALSHGEPDDAKEEKFS
AEQTVVELTGLLPATDYSVTLYALYEDDPSDPVTAVAATFPLPPPVSVEFPMVTHSMLKV
SWVPGAGHVPSHRITYSTNHGSDIKQVEVTGLNSVVVQNLSSLSRYLVSVQSNYPQGLSA
ALTSNVTTLKVPSPSDLRVTNFSDSDITVRWQAGADDVVSYLIKWISLSGGDLRQLRVSG
ESEGAVLEGVEEDKEYQISLSALYGDGAQSEAVAIRYSTLSGGGPSSISVTEEGAVSMVV
SWVPPNTHVLQYRVTYTALTAPESQDSTMLVPGDEKRVVLKSLQPDTRYSILITAEYRNR
EGGSGSTQGKTTSLRVSSVSVVRSDQSSICVSWRPVSAVDGYRIVIQSVKDKQTKEEAVA
ESSSSHCFTDLEPETLYRISVHSLLSSAEGAAVSILHPTATAPARLPIHRRMYPIHNEVC
PEVTIRNSIVKGFDMMEAFGLTRTAHSSVEGVAAEPFVFNTLPAYTVFRDIQLTQNTKFI
HPAGLSPEHTISITFRVLQETPREPFALWQLTDNDFQPKMGLVLDPTTKHLVYFSLDYRG
EVQELTFDQRQVHRLFYGSFHKIHLTVSQVSVSLSVDCQRVGERPARPLGSLPTDGFEML
GKLVKTRGPKSGSAPFQLQSFEIVCNTTWAFEDTCCDLPAMRDEESCPAPAYTCTCSSDV
PGAPGSPGPTGKPGTRGEKGEKGDPGHKGEVGPAGKPGFEGGLGALGSIGPRGIAVQGKM
GPPGARGGKGDAGRTGIQGLPGPQGSKGEQGVPGPLGIRGLEGNMGGPGLTGLRGFQGRP
GHPGPMGERGLSGLVGPSGLPGGKGERGEKGEAQSMAMIFQLVTQACEQLVHKEVLKLDM
FINEMNRKPAPIEEPVGPPGEPGIPGPKGPPGGRGNQGNVGSRGRPGRPGYPGEQGGRGM
LGAKGDAGPNVQGPTGIKGFAGPLGEAKLGDPGSKGDDGKSGPQGISGTPGQPGEMGPPG
LCDNSGGCNRAPQQTEDPYYGYQP
NT seq
4755 nt
NT seq
+upstream
nt +downstream
nt
atgtctcctcacctccatgctacatcatcatctctctggctcatgctgtgtttcctgctc
agtgtcttcctgctgctgtccccaggggtctatggccaaggtcgtcttaagctgacggtg
ctgtctgaggacagactgcagatgaaatggaaggaggccgacggacctgttcagggctac
aaagtcagagtgaaacccatctcagaggtgccacagccggagctgatgctgaccaccaca
cggggccgggccacggtggcaggactggactccggtcaggaatacgccctccaagtcctc
gtgctcaatgggacgacggagaggcttctcgcaaagcgcagattcacgatggagggtctg
cgggatgaggaaatgatccgcagcggtagtcgagagcagaagaagaagatgttgccaggc
gggtcggggtctggagacctggacgatgtgacggaggctcttattggacggccagcagtt
ctgtatccggaccccaccaacaaccccgctgctgctgctccgactacagagcccccagca
atagaaaccccctctcagctccccgagtcggcgccagagaatacccccaaagagaagagg
aagagaaagaatggaaaagagcgggatcgttccaagggggagaataaggaggagcagggg
acgacacagggcaaagcagccaaggagaaatcccggaaaacacccacccctacccaacca
gtgacagggatgtctccaaggaaaccatttgagtgtgagaccgatgcagctgcggacatt
gtgttgttggtggacggctcctggagtatcgggcgtaccaacttcagacgggttcgagac
ttcttggagggcctgatgacacccttcaacatcgggccggaccacattcagatcggtctg
acccagtacagcggagacccccgcacagagtggcatctcaacaacttcactaccaaagag
cagcttttggaggcagtgaggaatttcagatataagggtggaaacacatttacaggccag
gcgctgctccatgtcatggaggagaacatgaggccagaggcaggcgcaaggtcagctaca
ccttttttcctggtcttgttgaccgatggtaaatctcaggatgatgccattgctgcggca
gaccgcctgaagaatgccggcgtggagatcatcgctgtaggtgtaaaaaatgcggatgag
gccgagttgagacaagtagcgtcggagcccgtggatctgaacgtctacaatgtcaatgac
ttcccgctgctcagcaaactagtgtcccgattggtccacatcctgtgtgggaggatagag
gaccgcggcatctcaaaacgaatggagcctgggcccacagtagacccagccctctcctac
ccaagtccttctgatctccgcttctctcagctgggctccagagaagtgcagcttcactgg
accaatcctgctgaagctgtccaacagttcagagtggtctaccacagcgctgagggccag
agtccacaggaggtggtgttgggcggctccgagtccaccgcgctgctagaaggcctctcc
tctcagacactgtaccatgtgtctatcttccctgtgtatgaaaacaatgttggcctggcc
ctcagaggaaccgtcaccacattgcccctggccacgcctgccaacctggaggtgactcct
tcctctcacagcaccctgcaggtgagctggggtgctgcgcccagggccacacagtacatg
atcctgtactctgcactcagccacggagagcctgacgacgccaaggaggagaagttcagt
gcagagcagacggtggtggagctgacggggctactcccggccacagactactctgtcacc
ctgtacgctctgtacgaggatgatcccagcgatccggtcactgctgttgccgccacattc
cccctcccaccaccagtgagtgttgagttcccgatggtcacccacagcatgctgaaggtg
agctgggtgcctggagcagggcacgtccccagccacagaatcacgtacagcaccaaccac
ggcagcgacattaagcaggtggaggtaacaggactgaactcagtcgtggtgcagaacctc
tcctctctgtccagatatctggtttcagtccagtctaactacccacaaggcctgtctgca
gcactcaccagtaacgtcaccacactgaaggtgccttccccatcggacctcagggtgact
aatttctccgacagtgacatcactgtgcgctggcaggccggggctgatgacgtcgtctct
tacctcatcaagtggatctccctcagtggaggagacctgagacagctgagggtgagtggt
gagagtgaaggggcggtcctggagggcgtggaggaagataaggaataccaaatctctttg
tctgcactctatggagatggagctcagagtgaagcagtggccatacgctacagcacattg
tctggtggaggtccatccagcatctcagtgaccgaggagggagcagtcagcatggtggtg
agctgggtgcctcccaacacgcacgtcctgcagtaccgtgtgacttacaccgcgctgact
gcacccgagagccaggacagcaccatgttggtcccaggtgatgagaaacgggtggtgctc
aagtcgttacagccggacacacgttacagcatcctgatcaccgcagagtaccgcaacaga
gaaggaggcagcggctcaactcagggcaaaaccaccagtctgagggtcagcagtgtgagt
gtggtgcgctcagaccagtccagtatctgtgtgtcctggagacctgtgtctgctgtggat
ggataccgtattgtcatccagtcagtcaaagacaagcaaacaaaggaggaggctgtggca
gagtccagcagcagtcactgcttcactgatctggaaccagagactctgtatcgcatcagc
gtgcactccctgctcagctcagcagagggtgctgccgtctccatcctccacccaacagcc
acagctccggccagacttcccatccaccgccggatgtaccccatacacaacgaagtctgc
cctgaagtcaccatcagaaacagcattgtgaaaggattcgacatgatggaagccttcggt
ctgactcggacagctcactcctctgtggagggtgtagctgccgagccttttgtcttcaac
accctccccgcctacaccgtgttcagagacatccagctgacacagaacaccaagttcatc
caccctgcaggtttgtctccagaacacaccatcagcatcaccttccgcgtgctgcaggaa
actcccagggagcccttcgccctctggcagctcactgacaacgacttccagcccaagatg
ggattggtgctcgaccctacaacgaagcacctggtgtacttcagcctggactacagggga
gaggtgcaggagctgaccttcgaccagcggcaggtccacagactgttctatggcagtttc
cacaagatccacctgactgtcagccaggtgagcgtgtccctgtctgtggactgtcagcgt
gtgggcgagaggccggcccgccctctaggcagcctgcccaccgacggctttgagatgctg
gggaagctggtgaagacccgaggacccaaaagtggctctgctccgttccagctgcagtcc
tttgagatcgtctgtaacaccacgtgggctttcgaggacacctgctgtgacctgcctgca
atgagagatgaggagagctgtccggccccggcatacacctgtacctgttcctctgacgtc
cccggagcccccggctcccccggaccgactggaaagccaggtactcgtggtgagaaaggt
gaaaagggcgacccaggtcacaagggcgaggtgggtcctgcaggaaagcctggatttgag
ggaggtctcggagccctggggagcatagggccccgaggcattgctgtgcagggcaaaatg
ggtccacctggtgcaagagggggaaagggagacgctgggagaacagggatccagggttta
ccaggacctcaaggttcgaagggggagcagggggttcccggccctctgggtattcggggg
cttgaaggaaacatgggtggacccggcctgactggactaaggggtttccaaggaaggcca
ggacacccaggcccgatgggtgaaagggggctctcaggactggtgggcccttcgggtctg
cccgggggtaaaggggagcgaggagagaagggagaagctcagtccatggccatgatcttc
cagctggtcacgcaggcctgtgagcagctcgtgcacaaggaggtgctgaagctcgacatg
ttcattaatgagatgaatcggaaaccagctccaattgaggagccggtggggccccccggg
gaacctggtataccggggcctaagggcccaccaggcggcaggggcaaccaggggaatgtc
ggctcgagggggagacctgggaggccaggatatcccggagagcagggaggaagaggcatg
ctaggggccaagggggatgcagggccaaatgtccaggggcccacggggatcaaaggattt
gcaggtcctctgggtgaggctaagctgggtgacccaggttctaaaggagatgatggtaaa
tcaggaccccaggggatcagcggaacaccaggacagcccggagagatgggacccccgggt
ctgtgcgacaacagcggaggttgcaacagagccccccagcaaacagaagacccctattac
ggctaccaaccttga
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