Pseudochaenichthys georgianus (South Georgia icefish): 117450573
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Entry
117450573 CDS
T09629
Symbol
lrrc4ba
Name
(RefSeq) leucine-rich repeat-containing protein 4B
KO
K16360
netrin-G3 ligand
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Pathway
pgeo04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
117450573 (lrrc4ba)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
pgeo04515
]
117450573 (lrrc4ba)
Cell adhesion molecules [BR:
pgeo04515
]
Immunoglobulin superfamily
NGL family
117450573 (lrrc4ba)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_8
LRR_4
LRR_5
I-set
Ig_3
LRR_1
LRR_14
LRR_9
ig
V-set
Ig_2
LRRNT
LRR_NXF1-5
Ig_6
Motif
Other DBs
NCBI-GeneID:
117450573
NCBI-ProteinID:
XP_033944297
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All DBs
Position
8:17750436..17778016
Genome browser
AA seq
726 aa
AA seq
DB search
MRIATLTCLPGHSPLLFLLAQLLLRLLHAGPELVRAASACPSLCTCSNQASRVICTRQNL
DEVPESISVNTRYLNLQENSIQVIKSDTFKHLRHLEILQLSKNQIRQIEVGAFNGLPNLN
TLELFDNRLTLVPSHAFEYLSKLRELWLRNNPIETLPGYAFHRVPSLRRLDLGELKKLDF
ISDAAFVGLINLRYLNLGMCGLKDIPKLTALVRLEELELSGNRLEIIRPGSFQGLVSLRK
LWLMHSQVSVIERNAFDDLKSLEELNLSHNSLHSLPHDLFTPLHQLERVHLNHNPWICNC
DVLWLSWWLKETVPSNTTCCARCHAPPFLKGKYIGELDQSHFTCYAPVIVEPPTDLNVTE
GMAAELKCRTSTSTTSVNWITPNGTLMTHGSYKVRISVLHDGTLNFTNVTLRDTGQYTCM
VTNAAGNTTATAVLNVTAADASVNYTYFTTVTVETVETPVDGDYPTEINHTIIHVPTPSS
HLWREGVSTTASSLSAGWSSSSPRSTRPTFTVPITEPGFSGLDDVMKTTKIIIGCFVAIT
FMAAVMLVVFYKLRKQHQLHKHHGPARAIEIINVEDELGAGASGRGSGISGGSTVTQSGS
SGIGGGQSLRLHHPEMVNLPNLARSEHLNHYYKTHHFNNNMMSLGMGTGMGLNNNNNPLP
CSQSQNTSMSCSQVPTSGGAPMGGTLTSSVPQLGLHSSLKGLMGKCQNEPLLFKSSSKEN
VQETQI
NT seq
2181 nt
NT seq
+upstream
nt +downstream
nt
atgcgcatcgccacgctgacctgccttcccggccattcccccctcctctttctattggcc
cagctgctactgcggctcctccacgctgggccggagctggtgcgagccgcctccgcctgc
ccctccctctgcacctgctccaaccaggccagccgagtcatctgcaccaggcagaacctg
gatgaggtgcccgaaagcatatcagtcaacacacgatacctcaacctgcaggaaaactcc
atacaggttatcaagtcagacactttcaagcacttgaggcacctcgagattctccagctc
tcaaagaatcaaatccgtcagattgaagtcggagcattcaatggcctccccaacctcaac
acattggagctcttcgacaaccgcctcacattggtgccatcacacgcctttgagtacctc
agcaagttgcgggagctgtggctgcgcaacaaccccattgagactctaccaggctatgcc
ttccaccgagtgccctcacttaggcgcctggacctcggtgagctcaagaagttggatttc
atctctgatgcagcctttgttggcctcatcaatctacgctaccttaacctgggcatgtgc
gggctgaaggacattcccaaactgacagcccttgtgcgtttggaggagctggagctgtca
ggaaaccgactggagatcatccgacccggttccttccagggccttgtgtctctccgcaag
ctgtggcttatgcactcacaggtgtcagtcattgagcgcaacgccttcgatgacctcaaa
agtctggaagagcttaacctgtcccataactccctgcactccttgcctcatgacctcttc
acgccccttcaccagctggagagggtacaccttaaccataacccctggatctgcaactgt
gacgtcctttggctaagttggtggttgaaagagacggtgccgagcaacaccacctgctgt
gcccgctgccacgctcccccattcctaaaaggcaagtacattggagagcttgaccagagc
cacttcacctgctatgcaccggtcattgtggagccacctacagacctcaatgttaccgag
ggtatggccgctgagctcaagtgtcgcacaagcacctccacaacatctgtcaactggatc
acccctaatggcactctaatgacccatggctcttacaaggtgcggatatctgtcctgcat
gatggcacacttaacttcacaaatgtgaccctgcgtgacacgggccaatacacctgcatg
gtaaccaatgctgctggcaataccacggcaactgctgtccttaatgtcactgctgctgat
gccagtgtcaactacacctactttacaacagtcacagtggaaacagtggagacgccagta
gatggagattatcctacagaaatcaatcatacaataatccatgtccccacgccctcgagc
cacctgtggcgtgaaggtgtttctaccacagcctcctccctatccgcaggctggtcttcc
tcctctcctcgttccactcgaccaacgttcactgtgcccatcactgagccaggcttctca
ggcctggatgatgtgatgaagaccacaaagatcatcattggctgctttgtagccatcaca
ttcatggcagcggtgatgttggtggtgttctacaagctgaggaagcagcaccagctgcat
aaacaccatggccctgctcgtgccatcgagatcatcaatgtggaggatgagcttggggcc
ggagccagtggtaggggcagcggtatctcaggaggctccacagtgacgcagagtggaagc
agtggaataggagggggacagagcctcaggctgcaccatccagagatggtcaacttgccc
aacttggcacgatcggagcacctcaaccactactacaaaactcatcacttcaacaacaac
atgatgagcctgggcatgggcacgggcatgggactcaacaacaacaacaaccccttgcct
tgctcccagtctcagaacacctccatgtcttgttcccaggttccaaccagtggcggagca
cccatgggtggcaccctgacatcctctgtgccccagttgggtctccacagttctctgaaa
ggccttatgggaaaatgccagaatgagccactgctttttaagagcagctcaaaggaaaat
gtgcaagagactcaaatttga
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