Pseudochaenichthys georgianus (South Georgia icefish): 117450659
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Entry
117450659 CDS
T09629
Symbol
xab2
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Pathway
pgeo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117450659 (xab2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pgeo03019
]
117450659 (xab2)
03041 Spliceosome [BR:
pgeo03041
]
117450659 (xab2)
Messenger RNA biogenesis [BR:
pgeo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
117450659 (xab2)
Spliceosome [BR:
pgeo03041
]
Complex B
Other components
Prp19-related factors
117450659 (xab2)
Complex C
117450659 (xab2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
TPR_2
Suf
TPR_12
TPR_8
TPR_15
TPR_16
ARM_TT21_C
ARM_TT21
NRDE-2
TPR_MalT
LTN1_E3_ligase_6th
TPR_1
SNAP
Motif
Other DBs
NCBI-GeneID:
117450659
NCBI-ProteinID:
XP_033944441
LinkDB
All DBs
Position
8:complement(19331339..19339584)
Genome browser
AA seq
846 aa
AA seq
DB search
MPSLNGKPDVMFEDDDLPYEEEIIRNPYSVKCWMRYIEFKQNAGRSTLNMIYERALKELP
GSYKLWYNYLRERRKQIKGKCVTEPGYEEVNNCHERALVFMHKMPRIWLDYCQFLVSQCK
ITRSRQTFDRALRALPVTQHPRIWPLYLRFARNLPLPETAIRVYRRYLKLSPENTEEYID
YLRSVGRLDEAALRLAAVVNDESFVSKEGKSNYQLWHELCDLISQNPDKVTSLNVGAIIR
GGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAILTVVTVRDFTQVFDSYAQFEES
MIAAKMETTAEMGKDEEEDVDMELRLARFEQLIARRPLLLNSVLLRQNPHNVHEWHKRVK
LYDGNARQIINTYTEAVQTVDPMKATGKPHSLWVSFAKFYEENEQLDDARTIFEKATKVN
YKQVDDLAAVWCEYGEMELRHENYEQALRILRKATAIPSKKAEYFDVSEPVQNRVYKSLK
VWSMLADLEESLGTFQSTKAVYDRIIDLRIATPQIIINYAMFLEEHNYYEESFKAYERGI
ALFRWPNVYDIWNTYLTKFIDRYAGKKLERARDLFEQALDGCPAKFAKTIYLLYAKLEEG
YGLARHAMAVYERATQAVDDGERHTMFNIYIKRAAEIYGVTYTRAIYQKSIEVLPDMHAR
DMCLRFADMESKLGEIDRARAIYSYCSQICDPRVTATFWQTWKEFEIRHGNEDTIREMLR
IKRSVQATYNTQVNFMTSQMMKATTSSTVSDLAPGQMGIDDMKMLEQKAQQLAAEAEQDK
PKPKEKILFVRSDTSRTELAELAKQANPDEIDIGDDDEDDNNQGPEEVQLEQKSVPTAVF
GGLKED
NT seq
2541 nt
NT seq
+upstream
nt +downstream
nt
atgccttcgctaaacggaaaacccgatgttatgtttgaggacgatgatctcccttatgaa
gaagagatcatcaggaacccgtactcggtcaagtgctggatgcgttacatcgaattcaag
cagaatgcaggaagatccaccctgaacatgatctatgagagggctctgaaggagctgcct
ggcagctataagctgtggtacaattatctgagagagagacggaaacaaatcaaagggaaa
tgtgtcactgaaccaggatatgaagaggtcaataattgccatgaaagggcattagtgttc
atgcacaagatgccgagaatatggcttgattattgccagtttcttgtttctcaatgcaag
atcacaagaagtcggcaaacatttgaccgtgccctcagagctcttcctgttacacagcat
ccacgtatctggcctctgtatctccgctttgcccgtaacctgcccctgcctgagacagcc
attcgggtgtatcgcaggtaccttaagctttccccggagaatacagaggaatacatagac
tacttacgttctgttggccgcttggatgaagcagctttgcgtctagcagctgttgtcaat
gacgagagctttgtgtccaaagagggcaagtctaactatcagctgtggcatgagctctgc
gacctgatctcccagaaccctgacaaagtgacatctctgaatgtcggagccatcatcaga
ggaggcctcactcgcttcacagaccaacttggaaaactctggtgttcattagctgactat
tacatcaggagtggtcactttgagaaggctcgtgatgtttatgaggaagccatcctcacg
gtggtaactgtaagggatttcacacaagtgtttgatagttatgcccagtttgaagagagc
atgatcgcagctaagatggagaccactgctgagatgggaaaagatgaagaggaggatgta
gacatggagcttagactggcccgctttgagcagctgatagcccggcggccgctcctgttg
aacagtgttctactgcgacagaaccctcataatgtacatgagtggcacaagcgggttaaa
ctgtatgacggcaatgcacggcagatcatcaacacgtacacagaggcagtgcagacggtg
gatccaatgaaggccaccgggaagcctcactctctctgggtttccttcgctaaattctat
gaggaaaatgagcagcttgatgatgcccggaccatttttgagaaggctacgaaggtgaac
tacaagcaggttgatgacctcgctgcggtgtggtgtgaatatggagagatggagcttcgc
catgagaactatgaacaggcgctgcgtatactgaggaaagctacagccatcccatccaag
aaggctgagtactttgatgtatctgagccggtccagaacagagtttacaagtccttgaag
gtctggtccatgctggcggacttggaggagagtctcggcactttccagtccacaaaagca
gtgtatgaccggatcattgacctccgcatcgccacaccacagatcatcatcaattacgcc
atgttcctcgaagagcacaactactatgaggaaagctttaaagcatacgagcgaggtatt
gctctctttaggtggccgaatgtttatgacatctggaacacttacctcaccaagttcatc
gatcgttatgcgggcaagaagctggaaagagctagggatttatttgagcaagccctcgac
ggctgcccggccaagtttgccaagaccatttacctgctgtatgccaaactggaggaggga
tatggattggcacgacatgccatggccgtctacgaaagagcaacgcaggcagtagatgat
ggggaacgacataccatgttcaatatatacatcaaaagagcagctgagatttatggagtc
acgtacacaagagccatctaccagaaatctattgaggtccttcctgatatgcatgccagg
gacatgtgtctgcgctttgccgacatggagagtaaactcggggaaattgatcgggcccga
gcaatctactcctactgctcccagatttgtgacccacgggtgaccgcaactttctggcaa
acatggaaagaatttgagatccgccatggaaatgaagacactattagagaaatgctaagg
atcaaacgcagtgtccaagccacctacaacacccaggtcaactttatgacttctcagatg
atgaaggccacgacaagctccacagtgtccgatcttgctccaggccaaatgggaattgat
gacatgaaaatgctggaacagaaagcacagcagctcgctgcagaggccgagcaggacaaa
cccaagcccaaagagaaaattctctttgtcaggagtgacacctctcgcactgagttggct
gaacttgccaaacaagctaatcctgatgagattgacatcggtgatgatgatgaagatgat
aataaccagggaccagaagaggtgcagcttgaacagaagagtgtccctacagctgtcttt
ggagggcttaaagaggactga
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