Pseudochaenichthys georgianus (South Georgia icefish): 117450963
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Entry
117450963 CDS
T09629
Symbol
cacna1ia
Name
(RefSeq) voltage-dependent T-type calcium channel subunit alpha-1I isoform X1
KO
K04856
voltage-dependent calcium channel T type alpha-1I
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Pathway
pgeo04010
MAPK signaling pathway
pgeo04020
Calcium signaling pathway
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
117450963 (cacna1ia)
04020 Calcium signaling pathway
117450963 (cacna1ia)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
pgeo04040
]
117450963 (cacna1ia)
Ion channels [BR:
pgeo04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
117450963 (cacna1ia)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
PKD_channel
TMEM208_SND2
Motif
Other DBs
NCBI-GeneID:
117450963
NCBI-ProteinID:
XP_033944905
LinkDB
All DBs
Position
8:complement(26244729..26423470)
Genome browser
AA seq
2305 aa
AA seq
DB search
MTSEECPVSLGSISSAGPGQNEEYGLAQTDDIIEEVGADDDVSIGSDLSTLVLPFPELAP
VVFFCLKQTTCPRNWCIRMVSSPWFERISIMVILLNCVTLGMYQPCENIDCTSDRCQILQ
AFDAFIYIFFALEMVVKMVALGIFGRRCYLGDTWNRLDFFIVMSGMVEYSLDLQNINLSA
IRTVRVLRPLKAINRVPSMRILVNLLLDTLPMLGNVLLLCFFVFFIFGIIGVQLWAGLLR
NRCYLEENFTLPSSSGMTLPAPYYQPEEDDERPFICSLAIDNGIMSCNDVPARREGGRTC
CLDREDALHRQGLGLSPEPLANGSGAGEAIGLCINWNQYYTRCHTGSTNPHKDAINFDNI
VYAWIVIFQVITLEGWVEIMYYVMDAHSFYNFIYFILLIIIGSFFMINLCLVVIATQFSE
TKQREHQLMQEQRAQCLSSSTLASMAEPGDCYEEIFQLVCHVLRKAKRRSAALYYTLRGK
TPPAAGGRGNRRGGGNGNGERHHSRHPKTFHCPHQSKPDHGSEPLENSISLSVPQKPEDC
PICVLSLKDGVRAEGDSGKGEEEAEDAVKETGKEENHLEERGDGERKRTCFRHCIETWND
MRRKLWGIVESKYFSRGIMIAILINTISMGIEHHNQPDELTNVLEICNIVFTSMFTLEMI
LKLTAFGFFEYLRNPYNIFDGIIVIISVCEIIGQADGGLSVLRTFRLLRVIKLVRFMPAL
RRQLVVLMKTMDNVATFCMLLMLFIFIFSILGMHIFGCKFSLKTEAGDTVPDRKNFDSLL
WAIVTVFQILTQEDWNMVLYNGMASTSPCAALYFVALMTFGNYVLFNLLVAILVEGFQAE
GDANRSFSDDDRSSCNFEENDKQKDSLHLSDPKICTLTPNGHLDLSHGLFPGERLTFALD
SRKNSVNSLGRANLEQRALFSGRSYHNWGRPCAPHPQALWARRSSWNSLGGCRPFSSSSP
STSPAITTTSARPFYGYGLGGLGGVVGGSLRIRGPRASSSPRRHLHHVLQDEEESLISPP
PIPLHSLHLPHPMLPGQFVPRRDRRALSLELPHLLQVPGPPHLPLPPHPPLPPLTLHAQH
RKKSFSGGMVISGGGGSGHDSPGGLVGVHQDCNGKTPLSQLLQPPHRHHTEHAGGVNPQS
QLMSEVFPQVNTRSKDREDLDDDIEYSLCFRVEKMLEAYKPDWCESREEWSVFLFSPRNR
FRQICQSIVAHKLFDYVVLAFIFSNCITVALERPKILQGSLERVFLTISNYVFTAIFVTE
MTLKVVSMGLYVGDHSYLRSSWNVLDGFLVFVSLIDIVVSMAGGAKILGVLRVLRLLRTL
RPLRVISRAPGLKLVVETLITSLKPIGNIVLICCAFFIIFGILGVQLFKGKFFYCFGPDV
KNITNKSDCMLANYKWVHHKYNFDNLGQALMSLFVLASKDGWVNIMYHGLDAVAVDQQPV
TNNNPWMLLYFISFLLIVSFFVLNMFVGVVVENFHKCRQNQEVEEAKRREEKRQRRMEKK
RRKAQKLPYFASYGHIRLMIHTLCTNHYLDLIITFIIAINVITMSLEHYDQPRSLDLALK
YCNYFFTSMFVLESALKLTAFGFRRFFKERWNQLDLAIVLLSVMGITLEEIDFSAALPIN
PTIIRIMRVLRIARVLKLLKMATGMRALLDTVVQALPQVGNLGLLFMLLFFIYAALGVEL
FGELVCNEDYPCEGMSRHATFENFGMAFLTLFQVSTGDNWNGIMKDTLRECPPDHGTDVD
YACNPSLQFISPMYFVSFVLTAQFVLINVVVAVLMKHLDDSNKEAQEEAEMDAEIELELA
QGTLCCMGAPSCGGGKVDKGLGGPAGAKDRGCVTRERGEGVRKMRHSGGSTHSGAFNLRD
SSLNLYSPAQQIRMAEIEQASLKSEQMSDKSSSPALPDDLSLDEHTSYQLLPHECKGRCS
SDSRSSDEAGGGGSHAGGPPTQTAVQSLGQPCRPLIAGIDVETAIQEMEMQTHRPHTCTP
HRSPGGVSRSSNQERNGEGGGGASGVSPLFHLPEEFFHPAVAAIPAPPRSRSLRLTRGLR
LTSPASWASLRSPGAHSKMLCTQYPSHSDSSLATGSSEGSLQTTLEEGLSFSISPPQNLE
LSLPIAPLPLVCPLPLPEDSTAISSPVQTLRPRPTPSSALTLLATKGHQRSQSSGRGSTS
PGYTRDDSIDPSDEDLGIGIGSSIGGCGSSQAGNSEHLSETLSSLSLTSLLSPSSLVYPG
VAVKKCNSTGSLDQGGMLLSSRGREGRREILGLELMDPQGFLANPWTGVLVDTRGEGRGE
IVDGQQGFKVKSSSQTTVGPCRENR
NT seq
6918 nt
NT seq
+upstream
nt +downstream
nt
atgacgagcgaggagtgtcctgtgtcgctggggagcatttcctcagcagggccagggcag
aatgaggagtacggcttggcgcagactgatgacatcattgaggaagtgggtgcagatgat
gacgtcagcatcggcagtgacctgagcactctcgtgttgcccttcccggagctggcaccc
gtggtcttcttctgcctgaagcagaccacctgtcctcgcaactggtgcatccgtatggtc
tccagcccgtggttcgagaggattagcatcatggtgatcctgctcaactgtgtgacactg
ggcatgtaccagccctgtgagaacatcgactgcacctcggaccgctgccagatactgcag
gccttcgatgcattcatctacatcttcttcgcactggagatggtggtgaagatggtggct
cttgggatctttggccgtcgctgttacttgggagacacctggaacaggctggacttcttc
atcgtcatgtctgggatggtagagtactctctggacctgcagaacatcaacctttcggct
attcggacagtgcgggtccttcggcccctcaaagccatcaacagagtgccaagtatgcgt
atcctggtgaacctgctgctcgacactctgcccatgctgggcaacgtgctgctgctgtgc
ttcttcgtcttcttcatcttcggtatcatcggcgtgcagctgtgggcggggctactgagg
aaccgctgttacctggaggagaacttcaccctccccagctcttcaggtatgaccctacct
gctccatactaccagccagaggaggatgacgaacggcccttcatctgctccctggcaatt
gataatggcatcatgtcatgtaatgatgtgccggcgaggcgcgaaggcggacgcacatgc
tgcctggacagggaggacgcgctccacagacagggtttgggcttgagtcctgaaccactg
gccaacgggagcggtgccggtgaagcaattggtctatgcatcaactggaaccagtattac
actcggtgccacacaggaagtactaacccccacaaagatgccattaactttgacaacatt
gtctacgcctggatcgtcattttccaggtgatcactctggagggctgggtggagatcatg
tattatgtgatggatgcccattccttctacaacttcatctacttcattttactcatcatt
attgggtcattcttcatgatcaacctgtgcctggtggtcatcgctacccagttctcggag
accaaacagcgggagcaccagctgatgcaggaacagagggcgcagtgcctgtcctcctcc
accctcgccagcatggctgagccgggagattgctacgaggagatcttccagctggtgtgc
cacgtcctccgcaaggctaagaggagatcggcagctctctactacacgctgaggggcaaa
accccgccggctgctggtggcaggggcaacaggcgtgggggggggaatgggaacggagag
cgtcatcattccaggcacccaaaaacattccactgtccacaccagagcaagccagaccac
ggctctgagccacttgagaactccatcagtctgtctgtccctcagaaacctgaggactgt
cctatctgcgtgttatcactgaaagatggggtgagggcggagggagactccggcaaagga
gaggaagaagctgaggatgcggtgaaagagacgggcaaggaggagaaccatctagaggag
aggggagatggagagaggaagaggacgtgttttcgacattgtatcgaaacctggaacgat
atgaggaggaaactttggggcattgtagagagcaagtacttcagcaggggcattatgatc
gctattctgatcaacaccatcagcatgggcatcgagcaccacaaccagcccgacgagctg
accaatgtcctggagatctgcaacattgtgttcaccagcatgttcaccctggagatgatc
ctgaagctgactgcttttggcttctttgagtacctgaggaacccctataacatctttgat
ggcatcatcgtcatcatcagtgtgtgtgagatcatcggccaggcagacggcgggctgtca
gtgctgaggaccttcaggctgctgagggtcattaagctggtgaggttcatgccggcgctc
agacggcagctggtggtgctgatgaagaccatggacaacgtggccactttctgtatgctg
cttatgctcttcatcttcatcttcagtatcctggggatgcatatctttggctgtaagttc
agtctgaagacggaggcaggcgacaccgtgcctgacaggaagaactttgactccctgctc
tgggccatcgtcactgtcttccagattctgactcaggaggactggaacatggtgctttac
aatgggatggcatccacctcgccctgtgctgctctctacttcgtagctctgatgactttt
ggaaattatgtgctcttcaatttactggttgccatcctggtggagggttttcaggctgag
ggtgatgcaaaccgctctttctcggacgacgacaggtcttcctgtaattttgaggagaat
gataagcagaaagactctcttcatctctcagacccaaagatctgtacgctgactcctaac
gggcaccttgacttgtcccatggtctgtttccgggagagaggttgactttcgctctggac
tccaggaagaacagtgttaattctcttggtagggccaacttggagcagagggctttgttt
tcaggtcgaagttaccacaactggggtcgcccgtgtgccccccaccctcaggccttgtgg
gcccgtcgctccagctggaacagcctgggaggatgccggcctttctcctcctcgtctccc
tccactagtccggccatcaccaccacctctgcacggcccttctatggctacggcctgggg
ggtcttggcggcgtggttggagggagtcttcgtatccggggtcctcgtgcctcctcgtcc
ccgcggcgccacctccatcatgtcctccaagatgaggaggagtctctcatatctcctccc
cctattcctcttcactccctgcaccttcctcaccctatgctcccgggacagtttgtaccc
aggagggaccgcagggccctttcgctagagctgccccacctgctgcaggtgccaggaccc
ccgcaccttccactgccgccacacccccctctgccccccttgacgctccacgctcaacac
aggaagaagagcttctctggggggatggttatcagtggaggcggtggcagtggacacgac
agtccggggggcttagtaggggttcaccaagattgtaatgggaagacccctctttctcag
cttctgcagcccccccacagacaccacactgagcatgctggaggggtgaacccccagagc
cagctgatgtctgaagtcttcccccaggtgaacacacgcagcaaggaccgggaggacctg
gatgatgacattgaatatagcttgtgcttccgcgtcgagaagatgttagaagcgtacaaa
ccggactggtgtgagtccagagaggaatggtctgtcttcctgttctccccacggaacagg
ttcagacagatatgccagtccattgtcgcccataagctgtttgactatgtggtgttggcc
ttcatcttctccaactgcatcacagtagcgctggagaggcctaagatacttcagggcagc
ttggaaagagtcttcctcaccatctccaactacgtctttactgccatatttgtgaccgag
atgacactcaaggtggtctccatgggtctgtatgtaggggatcattcttacctgcggagc
agctggaatgttctggatggcttcctggtttttgtgtctttgattgacattgtggtttcc
atggcgggcggggccaagatcctgggtgtgctcagagtgctaagactgctaagaacactg
cgtcccctcagagtgatcagcagagctccaggtctgaagctggtggtggagaccctcatc
acctccctcaaacccatcggcaacattgtcctcatctgttgtgcattcttcatcatcttt
ggcattcttggggtccagctgtttaaaggcaagttcttttactgctttggccccgacgtc
aaaaacatcaccaacaagtccgactgtatgctagccaactacaagtgggtccaccacaag
tacaactttgacaacctggggcaggctctgatgtccctgtttgtgctggcctcaaaggac
ggctgggtcaacatcatgtatcacggcctggatgctgtggctgtggaccaacagcctgtg
accaacaacaatccgtggatgctgctgtatttcatctccttcctgcttattgttagcttc
ttcgtcctcaacatgtttgtcggtgtggttgtggagaatttccacaagtgtcgccagaac
caggaggtggaagaggccaaaaggcgtgaggagaagcgtcagcggcgcatggaaaagaag
aggagaaaagcccagaagctgccctactttgccagctacggccacatacgcctgatgatc
cacacactgtgcacaaaccactacctggacctcatcatcaccttcattatcgccatcaac
gtcatcaccatgtccttagagcactacgaccaacctcgttctctggatctcgccctgaag
tactgcaactatttcttcacttccatgtttgtgctcgaatcggcactcaaactcaccgcc
ttcggcttccgtcgcttctttaaagaaaggtggaaccagttggacctcgccatcgtgctt
ctgtcggtgatgggcatcaccctggaggaaatcgatttcagtgctgccctgcccatcaac
cccaccatcatccggatcatgagagtactgaggatagcccgagtgctgaagctgctgaag
atggccacagggatgagagcccttttggatacggtggtccaagccctgcctcaggtgggt
aacctgggcctgcttttcatgctgctgtttttcatctacgccgccttaggagtagagcta
tttggagaacttgtatgcaacgaagactacccatgtgagggaatgagtcgtcacgctacc
tttgagaactttggcatggccttccttaccttatttcaagtctccacgggcgacaactgg
aatggcatcatgaaggacacattgcgggagtgcccaccagaccatggcactgatgtggac
tatgcctgcaatcctagccttcagtttatctcgcccatgtactttgtctccttcgtgctc
accgcccagttcgtgctcatcaatgtggtggtggccgtgctgatgaagcacctggacgac
tccaacaaggaggcccaagaggaggcggagatggatgcagaaattgagctggagctggcc
cagggcaccctctgttgcatgggcgcccccagctgtgggggggggaaggtggacaaagga
cttggaggcccagcaggcgcaaaagacagaggatgtgtgaccagagagaggggggagggg
gtgaggaagatgagacattcaggaggcagcacgcactcaggagccttcaacctgcgggac
tccagcctcaacctgtactcaccagcacaacagatcaggatggcagagattgagcaggcg
tccctgaagtcagagcaaatgtcagacaagtcctcgtcccccgccctgccagatgacctc
agcctggacgaacacacctcctatcagctgctgccgcacgagtgcaagggaaggtgcagc
agtgactcccgtagctctgatgaggctggagggggagggagtcatgcaggaggccccccc
acccagacggcggtgcagagcctgggccagccctgcaggcccctcatcgctgggattgat
gtggagactgcaatacaggagatggagatgcaaacacatcgaccacacacatgcactcct
caccgtagccctggtggcgtttccagaagcagcaaccaggaaagaaacggagaaggtgga
ggaggagcgagtggcgtgtctcctctctttcatctgcctgaagagttcttccaccccgca
gtagcagccatcccagcacccccccgcagcaggagcctacggctgaccaggggcctcagg
ctgacctcccctgcctcctgggcctcactccgctccccaggggcccacagcaagatgctc
tgcacacagtacccatcccacagtgactcgtcccttgctacaggcagctctgagggcagc
ctccagaccaccctggaagagggcctgagcttcagcatctcccccccacagaacttggag
ttgtctttgccgatagctcccttaccactcgtgtgccccctcccgctgcctgaagacagt
accgccatctcctccccggtccagaccctgagaccgcggcccaccccctcgtcggccctc
accctcctggccaccaagggccaccagcggagccagagcagcggccgagggagcaccagc
ccgggctacacccgggacgactccatcgacccttcagacgaggacctgggcataggtatt
gggtcgtccattgggggctgtggctccagccaagcgggcaacagtgaacatttgtccgag
acgctgagcagcttgtctctcacatccctgctgtcccccagctccctggtgtacccgggg
gtagcagtgaagaagtgcaacagcacaggcagcctggaccaaggggggatgctgctgtcg
tcccggggcagggagggccgccgggagattctgggactggagcttatggacccccaaggc
tttttggccaacccttggacgggggtattggtggatacaagaggagaaggaagaggggaa
atagtagatggtcagcaagggttcaaagtgaagagctcaagccaaacaacagtagggcct
tgtcgggaaaacagatga
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integrated database retrieval system
