Pseudochaenichthys georgianus (South Georgia icefish): 117450968
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Entry
117450968 CDS
T09629
Symbol
casc3
Name
(RefSeq) protein CASC3
KO
K14323
protein CASC3
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Pathway
pgeo03013
Nucleocytoplasmic transport
pgeo03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
117450968 (casc3)
03015 mRNA surveillance pathway
117450968 (casc3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pgeo03019
]
117450968 (casc3)
Messenger RNA biogenesis [BR:
pgeo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
117450968 (casc3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Btz
Motif
Other DBs
NCBI-GeneID:
117450968
NCBI-ProteinID:
XP_033944912
LinkDB
All DBs
Position
8:complement(6019629..6049192)
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AA seq
784 aa
AA seq
DB search
MADRRRRRRRASQDSEDDDESGSGSDSGKSGSPTTKSRVREPEPPEVTTIRPEPKPVVES
ECESEDGVGEAVLSDYDSADPEENGSHSEGVEEEEEAEQFSDEEAPAAPTEPKPTTTAEG
PSTVEEVVDVEEVQEGEEVEEVDEEEEEEEEEEEEEEEEEEDKNEEKEAEEGGQSKEESK
AEEKGDLAGERQSGDGQESTDDPETKAGGIPGQKLDDDEDRKNPAYIPRKGLFFEHDVRG
HAQEEERPKGRNRKLWKDEGRWDHDRFREEEQAPKSREELIAIYGYDIRNGGGSGERPYR
QRRPRQSLSPGRDKRWGDGGERPVRSWHSGGGGRGGAPPSSTSPSNLPLTSNQRSSNASR
QPPPRSRPSHPQQNHMQHPPQSQYRNNELYAPHPRERPGPKAQCEPTGDRGVVSRGGRGG
GRAPSVLVEDITFSQGGSKEADPGVVTTSQQGGYPSASPRRQQQEQRGSGDMSSSSSDPP
QQSAQTNREASPPAERPVERKSYLAARKTRSRPSDLGSKQPSVEDSAARVNSSSPGDVGG
KSWSGEGNGPSQVGGGGGLGDQVQELARLSLVGQSWSPNPTSYFRSEMRGLPSMHVPGSP
PQFSNIEEISVGSNRAKRYSSQRQRTVPEPAPPMHLGVREGHYYEPMSYQGPIYAHGDGP
APIPPQSMLVQPEMHMPHPGLHPHQSGGPIANPALYGGPPVSLPPLPGQPQQLLPPPFYP
PPGVMTFPYPTMYPTQQGQAQVYGGVTYYDTMQQHAQPKPSPPRRTSQPVTIKPPPPELR
FASE
NT seq
2355 nt
NT seq
+upstream
nt +downstream
nt
atggcggaccggcggcgaaggaggaggcgcgcgtcccaggacagcgaggacgacgacgag
tccggttcgggttcggacagcgggaagtccggctccccgaccaccaagagccgtgtgaga
gaacccgaaccgccggaggtgacaacaatccgaccagagccgaaacccgtagtggagtcg
gagtgtgagagtgaagatggtgtaggtgaagctgtcctctcagactatgacagtgctgat
ccggaggaaaacggctcccattcagagggagtggaggaggaagaggaggccgagcagttc
agcgatgaagaagctccagcagcaccaaccgagcccaaaccgaccaccacagccgaaggc
ccgtcaacagtagaggaagtcgtggatgtggaggaggtgcaggagggggaggaggtggag
gaggtagatgaggaggaggaggaggaggaagaagaagaagaagaagaagaagaggaggag
gaggataagaatgaagagaaagaggcagaggaaggaggacagagtaaagaggagagcaaa
gccgaggagaagggagacctggccggagagagacagagcggggacgggcaggagtctacg
gacgacccagagacgaaggcgggagggatacctggacagaagctggacgacgacgaggac
cggaagaacccggcctacatcccgaggaagggcctgttcttcgagcacgacgtcagggga
cacgctcaggaggaggagaggcctaaaggtcggaacagaaagttgtggaaggacgagggt
cgctgggaccacgacaggttcagggaggaggagcaggcgcccaaaagccgcgaggagctc
atcgccatctacggctacgacatcaggaacggcggcggctccggagagcggccgtaccgg
caacgcaggccgagacagagtttgtctccaggcagagacaagcgctggggggacggagga
gagcgacccgtccgttcctggcacagcggaggaggaggccgaggaggagctccaccctcc
tccacatccccttccaatcttcccctcacttccaatcagcggagcagcaacgcctccaga
cagcctcccccccgcagcagaccatcccacccccagcagaatcacatgcaacatccgcct
cagtcccagtacaggaataatgaattatacgcacctcaccccagagaacgaccgggccct
aaagctcagtgcgagcccacaggagacagaggagtggtcagcagggggggacgtggtggt
gggagggcgccctctgtgctggttgaggatattacattcagccaaggaggctctaaggaa
gcggaccccggggttgtaacgacgtcacagcagggtggttacccgtctgcgtctccgaga
cgacagcagcaggaacaacgagggagtggcgacatgtcttcctcttcctccgaccccccc
caacagtcggcacagaccaatcgggaagcctccccccctgcagagcggccggtggaacgt
aaatcttacttggcggcccgcaagactcgctctcggccctccgacctgggcagtaaacag
ccgtctgtggaggattctgcagccagagtgaactcttcctcccccggagacgtggggggg
aagagctggtcgggggaaggtaacgggcccagtcaggtgggaggaggtggtgggctggga
gatcaggtacaggaattggctcggctcagtctggtaggacagagctggagccccaaccca
acgtcgtacttccgctccgaaatgaggggcctcccctccatgcacgtcccgggcagcccg
cctcagttctccaacatcgaggagatcagtgttggctcaaacagggccaagcgatactcg
tcccaacgtcagaggaccgtgccggagccggcgccgcccatgcacctgggcgtgagggag
ggacactactatgaacccatgtcgtaccagggaccaatatatgcccacggggatggcccc
gcccccatcccgccgcagagcatgctggtccagcctgagatgcacatgccccaccccggt
ctccatcctcaccaatcaggcggcccgattgctaaccccgccctctatggaggcccacca
gtttctctgccgccactgccagggcaacctcagcagctgctgcctccgccgttttaccca
cctccgggggtcatgaccttcccgtaccccaccatgtacccgactcaacagggtcaggcc
caggtgtacggcggcgtgacgtactacgacaccatgcagcagcatgcccagcccaagccc
tcgcccccccgccgcacctcgcagcccgtcaccatcaagcccccccctccggagttacgc
ttcgcctcagagtga
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