Pseudochaenichthys georgianus (South Georgia icefish): 117451077
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Entry
117451077 CDS
T09629
Name
(RefSeq) THO complex subunit 6 homolog isoform X1
KO
K13175
THO complex subunit 6
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Pathway
pgeo03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
117451077
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pgeo03019
]
117451077
03041 Spliceosome [BR:
pgeo03041
]
117451077
Messenger RNA biogenesis [BR:
pgeo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
117451077
Spliceosome [BR:
pgeo03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
117451077
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_CDC20-Fz
WD40_WDHD1_1st
WD40
WD40_Prp19
Beta-prop_TEP1_2nd
WDR55
Beta-prop_EML
Beta-prop_EML_2
ANAPC4_WD40
Beta-prop_SCAP
WD40_MABP1-WDR62_2nd
NBCH_WD40
EIF3I
Beta-prop_RIG_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_NOL10_N
Beta-prop_IP5PC_F
Beta-prop_EIPR1
Beta-prop_IFT122_1st
Beta-prop_TEP1_C
WD40_like
Beta-prop_WDR90_POC16_2nd
WDR54
Beta-prop_SPT8
Beta-prop_WDR75_1st
Motif
Other DBs
NCBI-GeneID:
117451077
NCBI-ProteinID:
XP_033945069
LinkDB
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Position
8:complement(5312737..5327576)
Genome browser
AA seq
323 aa
AA seq
DB search
MGPVELLHMSVFSQSFSPCGRFLAAGNNYGEIAVFSLSAALSPDATALSQKPVLTFTAHE
GPVFSLLSTDCHLLSAGNGEISCWSWSDLTKKNVKPLWTKRPNFKSSLEIPEINAMVLNT
RDNSLVVGGGDNNIHILDLEHGIFKAVLQGHSDYVHCLSVREREAEILSGGEDGAVRMWD
SRTGQSVHCVEIYKYESCARPQYGKWISCLTTDSDWMLCGGGPSLSLWHLRSLSPTSIFP
LTGCQRQTSFYQDMILAVGEGPSVAHCLLGGEVKAQIPCTPQSLNTLQLNTNSAEHRMLT
VGGSSNHIDVFTNLSYRAFSLSF
NT seq
972 nt
NT seq
+upstream
nt +downstream
nt
atgggtcccgtagagctcctccacatgtccgtgttctcgcagagtttttctccctgtgga
cgatttctggcagccgggaacaactatggcgagatcgccgtgttcagcctgtctgcagct
ctgagtccagatgccacagccctgagtcagaaacctgttctgaccttcacagctcatgaa
ggacctgtgttctcgctcctctccaccgactgtcacctcctgagcgcaggaaacggagag
atcagctgctggagctggagcgacctcaccaagaagaatgtgaaacctctgtggacaaag
agaccgaactttaaatccagtctagagataccggagatcaacgccatggtcctaaacacc
cgggataacagtctggtggtgggaggaggagacaacaacatccacatactggacctggag
cacggcatcttcaaggcagtgctgcagggacactcagactacgtgcactgtttgagtgtg
agagagagggaggcagagatcctgtctgggggggaggacggagctgtgaggatgtgggac
agtaggacgggtcagtctgtgcattgcgtcgagatctacaagtacgagagttgtgctcga
cctcagtacggtaaatggatcagctgtctgaccaccgactcagactggatgctgtgtggt
ggaggtccgtctctgtctctgtggcatctccgctctctgtccccgacctccatcttccct
ctgacgggctgccagagacagacgtccttctaccaggacatgatcctggctgtgggggag
ggcccgtctgtggctcactgtctcctggggggggaggtcaaggctcagatcccctgtacg
ccacagagcctcaacacgctgcagctcaacaccaacagcgcagagcaccggatgctgaca
gtgggaggcagcagcaatcacatcgacgtgttcaccaacctgtcgtacagagccttctcc
ctcagcttctga
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integrated database retrieval system
