Pseudochaenichthys georgianus (South Georgia icefish): 117451086
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Entry
117451086 CDS
T09629
Symbol
ciita
Name
(RefSeq) LOW QUALITY PROTEIN: MHC class II transactivator
KO
K08060
MHC class II transactivator [EC:
2.7.11.1
]
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
pgeo01001
]
117451086 (ciita)
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
pgeo04054
]
117451086 (ciita)
Enzymes [BR:
pgeo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
117451086 (ciita)
Protein kinases [BR:
pgeo01001
]
Serine/threonine kinases: Other
TAF1 family
117451086 (ciita)
Pattern recognition receptors [BR:
pgeo04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
117451086 (ciita)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NACHT
LRR_6
LRR_4
LRR_14
LRR_8
nSTAND_NTPase5
AAA_16
nSTAND3
AAA_22
NB-ARC
Roc
TsaE
Motif
Other DBs
NCBI-GeneID:
117451086
NCBI-ProteinID:
XP_033945082
LinkDB
All DBs
Position
8:29189888..29206215
Genome browser
AA seq
1643 aa
AA seq
DB search
MAQFEEVLDRVQEALTRSSPAEICALFQRVVKDQIISEAYGKSLGLYQLSDKMVPKPKSD
LMSTQGSTSHWTLNQGQLSQVRKCDPYQTGFEFEPSVAEHDCSGPRPTIDPLYEHQGNNP
KIIQELGGGPVMDKHYLNHRLSSTSIISDYQCGFRSDNRMKDLLRGAERMQKPLGENDII
DEGNLENEKEWLEQVEEAARRIAVPLWQHWDRGRRILLPLVPGKTAGCATGENTTKNREA
QCHVFNMEEETELAIACRTLDLYCDSFNCTEADLRFTLDNEGATGTAESPCFSTYDSVAT
TDLNQLFTYETGRKVSPDVDVCRAADRSTKDLLWSMGDGQWGMDTGFTEDITHVFSPCTL
TDTHTDAQDHSFYSNTDQSMTLDIFNDAENVLKTACNTNTCMTDDTRDLHLNKEDEEVAD
SHCGAKMQEMEQDPFVCPFDLADDLSEILTDDFLERLVDPNLDTEGFFDDPLFNCEEELS
TCSKELSTCTELPMMTEPFPDIQQQGEEDKTTGKTKSRSKRPRAPRIQQCPDQDTPSRPK
RQRAAAQPKTKVVQAELSITQATGSEPSSAETAGLSTTPPRILHLHPSIQFITIPDTPSC
QVVRSLRLSPSVITLPITNTAATPTYIFVPAGSPQFKPQVPPLSPTNGEVAPVQMSSSPR
GSLSDTASKALTHPCASPLSPGNEPSTCKESPLPQCPTPLDIPQDVKDYIQEAKAHMSQA
CQVMEAGLSLTSHYVDVPVSQREILRSGKNINKALDKEIVIMGDTDRQKSLLGRSRIFER
SKGEKPKRYILLLGNAGMGKTTLIRRLCLDWSTDCIPQFDFVFLLDSKALSLTDATFSLQ
TLLLNLSSFAPTCKDPNAVYAQILAAPKRVLVIFDGFCELRDYEILLQTQEKDLVTSLQK
DSKAQTFTVKQLYSAILQRVLLPGCTLLLSTRTRGTASQLLRRTDSLLEVCGFTPTDVQI
YLSQYFTDPDLRVSALDCFKNCSYLHLLCWNPGLCRLVCLVLEQCKSLEVLPRTLTELCH
QVLCMKVEKDSKDTNSQAETPSEISEKSVEETQTKSSSSSQMKRRNKNTHTQRTXRGSKK
QEKEKDDKDGEEMKSNGWEAVKTQERELLAQLSSQAWGGIKANSSIVPKGRTISAKLKAF
GQRTGLLLSYNLGTRQVVSNCESEDRRKTGTRETGEKRGSKGRTETENADASDDQILMWA
NPFLQSYLAGIHLSLSRTITDRAFLQTLPFQSGQKGRRRPQREELDLTQRFAVGLLFYNR
RELQRFHSYTETSFRDMLDSKQALVTTHLEGLSHDDLSPAQVLEACRYVYEASSSHGDGS
RDSGSQRLVAHLAENLPEVLTFHGVPFKPSDVFAVQNVLDQGGADGRRFCLNLEDSGIQI
SGLRALLGLNNINTYRACIADVITLWEQLEQNGEEALLQVTVSKFKVHPLKATQVCHIEH
LAKLVNIHVHKRLSDSSSQCDSILAEGVPAVKELHKLELELGPEKGPLVLPKLWELLPGL
HNLQHLDLENSTIGDKGAEELADTLVSLGSLEILNLSQNCIGDQGVRKLATVLRDLPKLQ
CLSLYSNVICDEGAETLAAVLPHMASLTDLDVKYNKLTSVGAQSLGASLRNCRKIKTLRM
WNQCIPYGVFERLQQQDNRIQWQ
NT seq
4932 nt
NT seq
+upstream
nt +downstream
nt
atggcccagttcgaggaggttctggacagagtgcaggaagctctgactcggtcctctcct
gctgagatctgtgctctattccaacgtgtggtgaaggaccagatcatctccgaggcctat
ggcaagagcttgggcctgtaccaactttctgacaagatggtacctaaaccaaagtctgat
ctaatgagtactcaagggtctacctcccactggaccctcaaccagggtcagctcagccag
gtaaggaaatgtgacccttaccagacaggatttgagtttgaaccgtcagtggctgaacat
gactgctcaggacccaggccaactattgatccactttatgaacatcaagggaataatcca
aagattattcaggaattgggtggggggccagtgatggacaaacactacctcaaccacagg
ctctcttctacatcgataataagtgactatcaatgcggtttcagatcagacaatcgaatg
aaggacttgctgagaggtgcagaaagaatgcagaagccattaggtgaaaatgacataata
gatgaggggaatttggagaatgagaaggagtggttagagcaggtagaggaggcggcgaga
aggatagctgtccctctgtggcagcactgggacagaggacggaggatcttgctgccactg
gttcctggtaagactgctggctgtgcaaccggagaaaacacaacaaaaaacagagaagca
cagtgtcatgttttcaatatggaagaggagacggagcttgcaattgcttgcaggacttta
gatttgtactgtgacagctttaactgtacagaggcagacttaagattcacactggacaac
gaaggagcaactggcactgcagaaagcccgtgtttctctacatacgacagcgtagcgaca
actgatttgaaccagttatttacctatgaaacaggaagaaaagtctcacctgatgtcgat
gtctgccgggcagctgacaggtcaacaaaggatctgctctggtcaatgggagatggacaa
tggggcatggacacaggatttacagaagatattacacatgtattttctccctgtacactt
acagacactcacaccgacgcacaagaccactcgttttactccaacacagatcagagcatg
acattagatattttcaacgatgcagaaaatgttttaaagactgcttgtaatacaaacact
tgcatgactgatgacacgagggacttgcatttgaataaagaggatgaggaggtggcggat
tcacactgtggtgccaagatgcaggaaatggaacaggacccgtttgtatgtcctttcgat
ctcgcagatgatttatctgagatcttgactgatgacttcctggagagactagtggatcct
aacctcgacactgaggggttctttgacgatccactgtttaattgtgaggaggaactcagc
acctgcagtaaggaactcagcacctgcactgaacttcccatgatgacagagcccttcccc
gacatccagcagcagggagaggaggacaaaacaacaggcaaaacaaaaagcagaagtaaa
agacccagagctcctcggatacaacagtgccccgatcaggacacaccatctaggccaaag
agacaaagagcagcagctcaaccaaaaactaaagtggtgcaggctgagctgtcaatcacc
caagccacaggatcagagccaagttcagcagagacagctggcctctccaccactccacca
agaatcctccatctccatccctccattcagtttatcaccatcccagacactccatcatgt
caggttgttcggagcctgaggctctctccttcagtaattacacttccaatcaccaatact
gctgccacacctacttacatatttgttcctgctggatcaccgcaattcaaacctcaagtg
ccacccctctccccgacgaatggtgaagtagctccagtccaaatgagttcatccccacga
ggatctctgtcagacaccgcaagcaaagccttaactcatccttgtgcctcacccctctca
cctggcaatgagccgtctacgtgtaaggaatcccctcttcctcagtgtcccacgcccctt
gatattccacaggatgtgaaggactacatccaggaagccaaagcacacatgagtcaagcg
tgccaggttatggaggctggcctcagcctgacgtctcattatgtggatgtgccagtgagc
cagagggaaattcttcgctctggaaaaaacataaacaaagccctggacaaagagatagtc
atcatgggagacacagatcgacaaaaaagcttgttggggaggagtcggatctttgagaga
tcgaaaggagaaaaaccaaaacgctacattttgcttctaggcaatgctggcatgggaaaa
accaccctgataagaagactgtgtctcgattggtccacagactgcatcccacagtttgac
tttgtcttcttgttagacagcaaggcactctctttaacggacgctacctttagccttcag
accctcttactaaacctctcctcctttgcccctacctgcaaggaccccaacgcagtgtac
gctcaaatccttgcagcccctaagcgcgttcttgtcatttttgatgggttttgcgagttg
cgggactatgaaattcttctccagactcaagaaaaagacttagtaacgtcgttacagaag
gacagtaaagcacagaccttcacagtaaaacagttgtactctgccatccttcagagggtc
ctccttccaggatgcacacttctcctttctacccgaacgagaggcacagccagccagctt
ctccgccgaacggacagccttttggaggtgtgtggcttcacccccactgacgtacagata
tatctgtcccagtacttcactgatcctgacctcagagtatctgctttggattgcttcaaa
aactgcagctatctacatctcctgtgctggaaccccggactttgtcgcttggtctgcttg
gttttagaacaatgcaaaagtttggaggtcctaccgagaacgttaaccgagctctgccat
caagtgctttgtatgaaagtggaaaaagacagtaaggacacaaactcacaggctgaaact
ccatcggaaatatctgagaaatcagttgaagaaacccagacaaaaagctcaagtagttct
caaatgaagaggcgtaataaaaacactcacacacaaagaaccnnaaggggttcaaaaaaa
caggaaaaagagaaagatgacaaagacggagaggaaatgaagagtaatggctgggaagca
gtcaaaacccaggagagggagttgctggcccagctaagttctcaggcctggggggggatc
aaagcaaactcttccatcgtccccaaaggacggaccatatctgcaaaactcaaggcgttc
ggccaaagaacagggctcttactctcttataatctggggacgaggcaggttgtctcaaat
tgtgagagtgaggacagaaggaaaactggaacaagagagactggagaaaagaggggaagc
aagggaaggacggaaactgaaaacgctgatgccagtgatgaccaaatcctgatgtgggcc
aaccctttccttcagagttaccttgcagggatccatttgtctctgtcaaggacaataaca
gaccgtgccttcctccagacccttcctttccaatctggccagaagggtcgccggcggcct
caaagggaggagctcgatctgactcagcggtttgcggtcgggctgttgttctacaaccgg
agagagcttcagaggtttcactcatacacagagacatccttcagggacatgttggactct
aagcaggctttagtgacaacacaccttgaaggtctttcccatgatgacctgagccccgcc
caggtcctggaggcttgtcgctatgtttatgaggcgagttcctcacatggtgatggtagc
agagacagtggtagtcaacgattggttgctcatctggcagagaatcttccagaggtcctg
acatttcacggagttccttttaagccatcggacgtgtttgctgtgcagaacgttctcgac
cagggtggagctgacggtagaaggttttgtttgaatctggaggattcggggatacagatt
tcgggactcagagctctgttggggctcaacaacatcaacacatacagggcatgcattgct
gatgtgatcaccttgtgggagcagctagagcagaacggtgaagaagcgctcctacaagtg
acggtgtccaaattcaaggtccaccctctgaaagccacacaagtgtgtcacatagagcac
ctggcaaagctggtgaacatacatgtgcacaagaggctgtcagacagttccagccaatgc
gattcaatcctggcagagggggtaccggcagttaaagagctacacaagctagagttggag
cttggtccagagaaaggtcccctggttcttcccaagctatgggagctcctgccaggtcta
cacaacctacagcacttagatctagagaacagtacgattggagacaaaggagcagaggaa
ttggcggatactttagtctcacttgggtccctggagatactcaatttgtcacagaattgc
ataggagaccagggggtgaggaaactggcaactgtgctgcgggatcttcccaaactgcag
tgtttaagtctctacagtaatgtgatttgtgacgaaggtgcagagactctggctgctgtc
ctcccacacatggcttcgctcactgacctggatgtcaagtacaacaagctaacaagtgtt
ggagcacagagcctgggagccagtctgagaaactgtagaaaaataaagactttgaggatg
tggaaccagtgtattccttacggcgtgtttgagagacttcagcagcaggacaacaggatc
cagtggcagtag
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integrated database retrieval system
