Pseudochaenichthys georgianus (South Georgia icefish): 117451179
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Entry
117451179 CDS
T09629
Symbol
htt
Name
(RefSeq) huntingtin isoform X1
KO
K04533
huntingtin
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pgeo03019
]
117451179 (htt)
04131 Membrane trafficking [BR:
pgeo04131
]
117451179 (htt)
03029 Mitochondrial biogenesis [BR:
pgeo03029
]
117451179 (htt)
Messenger RNA biogenesis [BR:
pgeo03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
117451179 (htt)
Membrane trafficking [BR:
pgeo04131
]
Endocytosis
Rab GTPases and associated proteins
Rab associated proteins
117451179 (htt)
Mitochondrial biogenesis [BR:
pgeo03029
]
Mitochondrial quality control factors
Regulator of mitochondrial biogenesis
Other regulator of mitochondrial biogenesis
117451179 (htt)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Htt_C-HEAT
Htt_N-HEAT
Htt_bridge
Htt_N-HEAT_1
HEAT
HEAT_GCN1
HEAT_EF3_N
HEAT_2
HEAT_ECM29
Motif
Other DBs
NCBI-GeneID:
117451179
NCBI-ProteinID:
XP_033945356
LinkDB
All DBs
Position
1:complement(14327672..14399612)
Genome browser
AA seq
3188 aa
AA seq
DB search
MATMEKLMKAFDSLKSFQQQQGPPTAEELVQRQKKEQATTKKDRVTHCLTICENIVAQSL
RTSPEFQKLLGIAMEMFLLCSDDSESDVRMVADECLNKIIKALMDSNLPRLQLELYKEIK
KNGASRSLRAALWRFAELAHLIRPQKCRPYLVNLLPCLSRITKRQEESVQETLAAAMPKI
MSALGHFANDGEIKVLLKSFVANLKSSSPTIRRTAASSAVSVCQHSRRASYFYTWLLNVL
LGLLVPVDEEHPTHLILGVLLTLRYLMPLLQQQVNTSSLKGSFGVTRKEADVQPSPEQLL
QVYELTLHYTQHWDHNVVTASLELLQQMFRTPPPELLHMLITAGSILHGSVFRQDAESRA
RSGSILELIAGGGSSCSPLLLRKPRGKMLSGEEDGLEDDAERTEVTFTASVVGADGSSAA
QVDIITEQPRSSQHTLQPGESTDLSASSEQGGGGGTSASDTPESPNDNEEEMLSRSSSGG
ANVTPETADYTTPETEAVPLGDGGPLLSTNDRSLPPSDSSQTTTEGPDSAVTPSDVAELV
LDGSESQYSGMQIGTLQDEEDEGAAPSSQEEPQEPFIQSALALSKPHLFDGRGHNRQGSD
SSVDRFIPKDEPAEPEPDVKPSRIKGPIGHYTDQGAEPLVHCVRLLAASFLLTGQKNGLT
PDKEVRVSVKALAVSCIGAAAALHPEAFFNSLYLEPLDGTPVVEQQYISDMLGLADHGDP
QIRGAIAILCGAIIQAALTKTRYNIHSWLASVQSATGNPLSLVDLLPLLQRTLKDESSVT
CKMACSAVRHCLMTVCSSTLSELGLQLMIDLLALRDSSYWLVRTELLETLAEMDFRLVNF
LERRTEHLHKGDHHYTGRLCLQDRVLNDLVIRLLGDDDPRVRHVAASAVSRLVSRLFYDC
DQGQVDPVVAIARDQSSVYLQLLMHEAQPPSQFTVSTITRTYRGYNLSNNVSDVTIENNL
SRVVTAISHAFTSSTSKALTFGCCEALCLLATHFPVCTWSTGWHCGYVSSSSSFSSRSSL
NRSRGRALSVSQTGSAPASSASSSSAPDTERRTLTVGMANMVLSLLSSAWFPLDLASHQD
ALLLTGNLLAAVAPKCMRNPWAGEEEGGSGSTNTSGGPNKMEEPWAGLSERSLVAMVEQL
FSHILKILNICAHVLDDTPPGPAIKATLPSLSNTPSLSPIRRKGKEKDIVEPSAAPMSPK
KSVDINTGRPADGTGSTAVNKSTTVGNFYHLPTYLKLYDVLKATHANYKVTLDLHSSQEK
FGGFLRSALDVLSQLLELTTLHDISKCVEEILSYLKSCFSREPTMATVCVQQLLKTLFGT
NLASQCESVLSGPSRSQGKALRLGSSSLRPGLYHYCFMAPYTHFTQALADASLRNMVQAE
QEQDTSGWFDVMQKASNQLRSNIANATRQRGDKNAIHNHIRLFEPLVIKALKQYTTSTSV
ALQRQVLDLLAQLVQLRVNYCLLDSDQVFIGFVLKQFEYIEVGQFRDSEAIIPNIFFFLV
LLSYERYHSKQIISIPKIIQLCDGIMASGRKAVTHAIPALQPIVHDLFVLRGSNKADAGK
ELETQKEVVVSMLLRLVQHHQVLEMFILVLQQCHKENEDKWKRLSRQIADVILPMISKQQ
MHLDSPEALGVLNTLFETVAPSSLRPVDMLLKSMFTTPVTMASVGTVQLWVSGILAVLRV
LVSQSTEDIVLSRVHELSLTPHLLSCHTIRRLHQQSPSPSDPPAADTLYSQDGEAQKALP
EETFARFLLQLVGVLLDDISSRQVKVDITEQQHTFYCQQLGTLLMCLIHVFKSGMFRRIT
AAATRLLKGEAGGVQPGAEAGLFYPLEALNSMVQCMITTHPSLVLLWCQVLLIIDYTNYS
WWAEVHQTPRRQSLSCTKLLSPHSSGEGEEEKHETRLAMVNREIVRRGALILFCDYVCQN
LHDSEHLTWLIVNHVQDLISLSHEPPVQDFISAVHRNSAASGLFIQAIQSRCDNLSAPTM
LKKTLQCLEGIHLSQSGSLLVLYVDKLLNTPFRVLARMVDTLACRRVEMLLAETLQNSKA
QVPVEELNRIQEYLQTSGLAQRHQRFYSLLDRFRATVTDTCSPTPPVTSHPLDGDPPPAP
ELVNADKEWYVALVKSQCCLRGDVSLLETTELLTKLPPADLLNIMSCKEFNLSLLCPCLS
MGMQRCARGQGSLLLETALQVTLERLEGVTGSLPVPHQSFLPPAQPQPYWKQLADVYDEP
GFYPRVLSLCRALSQYLLSVSQLPSSLHIPPDKEHLITSFTCTAAEVVAWRLLQNQLPLS
VDLQWALSCLCLALQQPCVWNKLSTAEYATHTCSLIYSLRLIIVAVAVSPGDQLLHPEKK
KTRAERDAEGDEVDTAHADHICESQACEIMAELVEGLQSILSLGHHRNSAFPAFLTPTLR
NIVISLSRLPLVNSYTRVPPLVWKLGWSPQPGGEYGTTLPEIPVDFLQEKDVFREFLYRI
NTLGWSSRTQFEETWATLLGVLVTQPITMDQEEEMQQEEDLERTQLNVLAVQAITSLVLS
AMTLPTAGNPAVSCLEQQPRNKSLKALETRFGRKLAVIRGEVEREIQSLVSKRDNVHTHH
PYHAWDPVPSLSAASAAGTLISHEKLLLQINTEREMGNMDYKLGQVSIHSVWLGNNITPL
REEEWGEDEEDEADTPAPTSPPTSPINSRKHRAGVDIHSCSQFLLELYSQWLIPGSPSNR
RTPTILISEVVRSLLAVSDLFTERNQFEMMFSTLMELQKLHPPEDEILNQYLVPAICKAA
AVLGMDKAIAEPVCRLLETTLRSTHLPSRMGALHGVLYVLECDLLDDTAKQLIPTISEYL
LSNLRAIAHCVNLHNQQHVLVMCAVAFYMMENYPLDVGAEFMAGIIQVCGVMVSASEDST
PSVIYHCVLRGLERLLLSEQLSRVDGETLVKLSVDRVNMPSPHRAMAALGLMLTCMYTAV
LAAGSDVTGVRGQVDCASAEAMGVTAGHVGFSSGKEKVSPASRPAHSDPQAPDSESIIVA
MERVSVLFDRIRKGLPSEARVVARILPQFLDDFFPPQDVMNKVIGEFLSNQQPYPQFMAT
VVYKVFQTLHATGQSSMVRDWVLLSLSNFTQRTPVAMAMWSLSCFFVSASTSQWISALLP
HVISRMGSSEVVDVNLFCLVAMDFYRHQIDEELDRRAFQSVFETVASPGSPYHQLLGCLQ
SIHQDTSL
NT seq
9567 nt
NT seq
+upstream
nt +downstream
nt
atggccaccatggagaaattgatgaaggcctttgactctctgaagtcattccagcagcag
cagggaccaccaaccgctgaggagcttgtccagaggcagaaaaaagaacaggctactacg
aagaaggacagggtcacccactgtctgacaatatgtgaaaacatcgtggctcagtctctg
agaacgtctccagagtttcagaaactgctgggcatcgctatggagatgttcctgctctgc
agtgatgacagcgaatcagatgtccggatggtagccgacgagtgcctgaacaaaatcatt
aaagcgctgatggactccaacctgcctagactgcagctggagctgtacaaagaaattaaa
aagaatggtgcctctcggagtctgagggcggctctgtggaggtttgccgagctcgctcac
ctcatcagaccacagaaatgcagaccctacctggtgaacctgctgccgtgcctctcccga
atcaccaagcggcaggaggagagtgtgcaggagactctggctgctgcgatgcccaagatc
atgtccgccttggggcacttcgccaatgacggcgagatcaaggtgctgctgaagtccttt
gtggccaacctgaagtccagctccccgaccatcagacgcacagcagccagctccgccgtc
agcgtgtgccaacactccagacgcgccagctacttctacacctggctccttaatgtgctg
ctgggtctgctggttcccgtggatgaggagcatcccacacacctaattctgggggtcctg
ttgacccttcgctacctgatgcctctgctgcagcagcaggttaacacatccagcctcaaa
ggaagcttcggagtcacgaggaaggaggccgacgtccagccctcacctgagcagctccta
caggtgtacgagctgacgttacactacacgcagcactgggatcacaatgtggtcacagcg
tctctggagctcctgcagcagatgttcaggacccccccgccagagctcctgcacatgctc
atcacagcgggcagcatcctgcatggctccgtgttccggcaggacgcagagagtcgcgca
cgctccggcagcatcctggagctcattgcggggggagggtcttcctgcagtccactcctt
cttaggaaaccaagaggtaaaatgctctctggagaggaggacggcttggaggatgacgct
gagagaacggaggtcacattcacagcgtcagtcgttggtgcggacggctcctcggcggcc
caggtggacatcataaccgagcagccgcgctcctcccagcataccctgcagcccggcgag
tccacggacctcagtgcctcctcggagcagggcggaggaggcgggacttcggcttcagac
actcctgagtcacccaacgacaacgaggaagaaatgctcagtcgcagctccagcggtggg
gccaacgttaccccagagacggccgactacaccaccccagagacggaggcagtaccctta
ggagacggcgggcctttgctcagcacaaacgaccgctcccttccacccagcgactcctcg
cagaccaccacggaggggccggactcagccgtcaccccttcggatgtagcagaactggtg
ctggacggcagtgagagccagtactcagggatgcagatcgggacattacaggatgaagaa
gatgaaggagcagcaccttcctcccaggaagagccccaggaacccttcatccagtcagct
ctggctctgagcaaacctcatctcttcgacggccgaggccacaaccggcagggttcagac
agcagcgtggaccgcttcataccaaaggacgagcccgccgaacctgaacctgacgtcaag
ccatcacggataaaaggtccaatcggacattacacagaccaaggggcggagccactggtg
cactgtgtacggcttctcgctgcttccttcctactgacgggacagaaaaatggtctgacc
cctgacaaggaggtgcgagtgagcgtgaaggctctggcggtcagctgcatcggggctgca
gcagcgctccaccctgaagccttctttaattccctctacctggagccgctggacggcact
ccagtagtagaacagcagtatatcagtgacatgctgggcctggctgaccacggggacccc
cagatcagaggggccatagccatcctctgcggagccatcatacaagccgcactcaccaaa
acacgctacaacatacacagctggctggccagtgtgcagagtgcaacaggtaaccctctg
tccctggtggacttgttgcctttgctccagagaactctgaaagatgaatcctccgtcacc
tgcaagatggcttgctctgcagtgaggcactgcctcatgaccgtgtgcagcagtaccctc
agtgagctgggcctgcagttgatgatagaccttcttgctctgagggactcgtcctattgg
ctcgttcgcactgagctcttggagactctggcagagatggacttccggttagtgaatttc
ttggagagaagaacagaacatttgcacaaaggggatcatcactacactgggcggctgtgc
ctgcaggaccgagtcctgaacgatttggtcatccgtctgttgggagatgacgaccccaga
gtccgacacgtggcagcgtcagctgtcagcaggctggtttccagattgttctacgactgc
gaccagggtcaagtggacccagtagtggcgattgcccgggaccagagttcagtctacctg
cagctgctgatgcacgaggcccaacccccctcccagttcacagttagtaccatcacaagg
acgtacagaggctacaacttgtccaacaacgtgtctgatgtcacaatcgagaacaatttg
tccagagtcgtcaccgccatctcccacgctttcacctcctctacctccaaagccctgact
tttggctgctgtgaggccttatgcctcctggctacacatttcccagtgtgcacctggagt
acaggctggcactgcggctatgtgagctccagcagcagcttctcttcccgctcgagtctg
aaccgcagcaggggccgggccctcagtgtgtcgcagaccggcagtgctccagcctcttca
gcctcctcctcgtctgcacccgacactgagcgcaggactctgacagtaggcatggccaac
atggtgctctccttactctcctccgcctggtttccacttgatctggcctcacaccaagat
gcacttttgctgactggcaatctgcttgctgctgtggctccgaaatgcatgcgtaacccc
tgggctggagaggaggaaggcggcagtgggagcaccaacaccagtggaggccccaacaag
atggaggagccatgggcagggctgtcggagcgctccctggtggccatggtggagcagctc
ttctcccacatactgaagatcctcaacatctgcgcccacgtgctggacgacacccccccc
ggaccagctattaaagccaccctcccctccttgagcaacaccccctccctcagtcccatc
aggaggaaaggaaaggagaaggatattgtggagcccagtgctgcccccatgagcccaaag
aaaagtgttgacatcaacacaggcaggccagcagacggcacggggtccaccgccgtaaac
aagtctaccaccgtcggcaacttctaccacctgcccacctacctcaagctctacgacgtc
ctcaaagctacacacgccaactacaaggtgacgctggacctccacagtagtcaggagaag
tttggaggatttctgcgttcagctctagatgttctctctcagctgctggagctcaccacc
ctacatgacatcagcaagtgtgtggaggaaatcttgagctacctcaagtcctgcttctcc
agagaacccaccatggcgacagtttgtgtacaacagctgttgaagaccctgtttggcacc
aacctggcctctcagtgcgagagcgtcctgagcggacccagccgctcccagggcaaggct
ctgcgcctcggctcctccagcctgcgacccggcctctaccactactgcttcatggcgccc
tacacgcacttcacccaggctttagccgacgccagcctacgcaacatggtgcaggccgaa
caggagcaggacacctctggatggtttgatgtgatgcaaaaagcttcgaaccagctgagg
tccaacattgcaaacgcgacacgccaaagaggagacaagaatgccatccacaaccacatc
cgtctgtttgagccgctggtcatcaaagctctgaagcagtacaccaccagcacctcggtg
gcgctgcagagacaagtcctggacctgctcgcacagctggtgcagctcagagtcaactac
tgcctgctggactctgatcaggtgttcatagggtttgtcctgaagcagtttgagtacatt
gaagtgggacagttcagagattcggaggccatcatccccaacatctttttcttcctggtg
ctcctttcatacgagcgctatcactccaagcagataatcagcatccccaagatcatccag
ctgtgtgacggcatcatggcgagcggcaggaaagctgtcacacatgccatcccagccctg
cagccgatagtccacgacctgtttgtgctgaggggctccaacaaagcagacgcaggcaaa
gagttggaaacacagaaagaggtggtggtctccatgctgctcagactggtgcaacaccat
caggtgttggagatgttcatcctcgtgctgcaacagtgtcacaaagagaatgaagacaag
tggaagcgattgtcgaggcagattgctgacgtcattcttcccatgatttctaagcagcag
atgcacctggactctccggaggcgttgggggtgttgaacactctctttgagacggtggcc
ccctcctctctccgacctgtggacatgctgctcaagagtatgttcaccaccccggttacc
atggcttccgtagggacggtgcagctgtgggtgtcggggatcctggcggtgctccgggtg
ctcgtctcccagtctactgaggacatcgtcctgtcccgggtccacgagctctccctcacc
cctcatctcctctcctgccacacgatccgccgcctgcatcagcagagcccctccccaagc
gacccccccgctgccgacacactctacagccaggacggtgaggcacaaaaagccctgcct
gaggaaaccttcgccaggttcctgctgcagctggtcggagtgttgctggatgacatttcc
tccagacaggttaaagtggacattacagagcagcagcacaccttctactgccagcagctg
ggcaccctgctcatgtgtctcatacatgtcttcaaaagtggtatgttccgcaggatcacc
gctgcagcgacccgcctcctgaagggtgaggctgggggtgtgcagcctggagcagaggct
ggcctgttttaccctttagaggctctgaacagcatggtgcagtgcatgatcaccacccac
ccctccctggtgctgctttggtgccaggtcctcctcatcatcgactacacaaactactcg
tggtgggcagaggtgcaccagacacccaggagacaaagcctctcgtgcacaaagctgctg
agccctcactcctcaggggaaggagaagaggagaagcacgagacccggttagccatggtc
aaccgagagatcgtccgaaggggagcgctcatcctcttctgtgactacgtgtgtcagaac
ctccatgactctgagcatctgacatggctgatcgtcaaccatgtgcaggacctcatcagc
ctttcccatgagcctccagtgcaggatttcatcagcgctgtgcaccgtaactcagctgcc
agcggcctcttcatccaggccatccagtcccgctgtgacaacctcagtgctcctaccatg
ttgaagaagactctgcagtgtttggaaggaatccacctgagtcagtccggctccctgctg
gtgctgtacgtggacaagctgctcaacacgcccttcagggttctggctcgcatggtggac
acactggcgtgtcgcagggtggagatgctgctggctgagacactacagaacagtaaagct
caggtgcctgtggaggagctcaacaggatccaggaatacctccagaccagcggcctagct
cagaggcatcagaggttctactccctgctggacaggttcagagccactgtcaccgacacc
tgcagccccacgcctcctgtgacatcacaccccctcgacggagacccgcctcctgcccca
gagctggttaatgcagataaggagtggtacgtggctctagtgaagtctcagtgttgtctc
cgtggagatgtttccctgttggagacgacagaactcctcaccaaactgcctcccgctgac
ctcttaaacatcatgagctgcaaggagttcaacctaagcctgctgtgtccatgcctgagt
atggggatgcagcggtgtgcccggggtcaggggtccctcttgttagagacagccttgcag
gtgaccctagagcggctcgagggggtcaccgggtcacttcctgtcccgcaccagtccttc
ctgccgcccgcccagccacagccctactggaaacaactagctgatgtgtatgatgagcca
ggtttctaccccagggttctgtcgctgtgcagagcgctgtcccagtacctgctgagtgtg
agccagctgccctcctcactacacatcccccctgacaaggaacacctcatcacctctttc
acctgcactgctgcagaggtggtggcgtggcgtctgctccagaaccagctgcccctcagt
gtggacctgcagtgggctctgtcctgcctgtgcctggccctgcagcagccctgcgtctgg
aacaaactctcaactgcggagtacgccacgcacacctgctccctcatctactctctacgc
ctcatcatcgttgcagttgctgtgagtcctggtgaccagcttctgcatccggagaagaag
aagacgagggcggagagagacgccgaaggagacgaggtggacacggcacatgctgaccac
atttgcgagtcgcaagcatgcgagatcatggcggagctggtggaaggcctgcagagcatc
ctttccctgggtcaccatagaaacagtgcatttcccgctttcctcacaccaaccctgcgc
aacattgtcatcagtctgtcccggctgcctctggtcaacagctacacccgagtacctcca
ctggtttggaaactgggttggtcccctcagccaggaggagagtacggcaccacactgcct
gagatccctgtggacttcctgcaggaaaaggatgtcttcagagagttcctctaccgcatc
aacacactgggctggagcagcaggactcagtttgaggagacctgggccacactgctgggg
gtgctggtcacccaacccatcactatggaccaggaggaggagatgcagcaggaggaggac
ttggagcgaacccagttaaatgtgttagcagtgcaggccatcaccagcctggtgctgagt
gccatgaccctgcccactgctggcaaccctgcagtcagctgtcttgaacagcagccccgc
aacaagagcctcaaagccctggaaacacggtttggaaggaaactggcagtgatcagaggc
gaggtggagagagagattcagtctcttgtgtcgaagagagacaacgttcacacacaccac
ccgtaccacgcctgggaccccgtgccctcgctgtcggcagcctccgctgcaggcacactg
atcagccatgagaagctgttgcttcagatcaacacagagagggagatgggaaatatggac
tacaaactaggacaggtctccatccactcagtgtggctaggtaacaacatcaccccactg
agagaggaagaatggggggaggatgaagaagatgaagcagacactccagcccccacctcc
ccgcccacatctccaatcaactccaggaagcaccgcgcaggagtggacattcattcatgt
tcccagttcctcctggagctctacagtcagtggctgatccccggctccccgagcaacagg
aggaccccgaccatcctcatcagtgaggtggtccgatcgctgctggcggtgtcggacctg
ttcacagagaggaaccagttcgaaatgatgttctccaccctgatggaactgcagaagctc
caccccccagaggacgagatcctcaaccaatacctggtgcctgccatctgcaaggctgcc
gccgtcctgggaatggacaaagcaatagcggagcctgtgtgccgcctgttggagaccacc
ctgcgcagcacccaccttcccagccgcatgggggctctgcacggggtgctgtacgtgttg
gagtgtgacctgctggacgacacggccaaacagctcattcccaccatctccgagtacctg
ctgtccaacctgcgggccatcgctcactgtgtgaacctgcacaaccagcagcatgtgttg
gtgatgtgcgccgtggccttctacatgatggagaactaccctctggacgtaggggctgag
tttatggctggcattatacaggtgtgtggtgtgatggtgtcggccagcgaggactccacc
ccctccgtcatctaccactgtgtgctgcggggcctggagcgcctgctgctgtcggagcag
ctgtcccgcgtggacggagaaacgctggtaaaactcagcgtggatcgagttaacatgccg
tcgccacacagagccatggctgccctgggcctcatgctcacctgcatgtacaccgcggtg
cttgcggcgggttcagacgtgacaggggttagaggtcaggttgactgtgcctcagcagag
gcgatgggcgtcacggcgggtcatgttggtttctcctcaggcaaggagaaagtcagccct
gccagtcgccccgcccactctgaccctcaggccccggacagcgagtccatcattgttgcc
atggagagggtctctgtgctctttgacaggatccggaaaggtttacccagcgaggctcgg
gtcgtggccaggatccttccccagtttctggacgatttcttccccccacaggacgtcatg
aacaaggtcatcggagagttcctgtccaatcagcaaccttacccacaattcatggccacc
gtcgtctacaaggtgttccagaccctccacgccacaggacagtcctctatggtgagagac
tgggtgctgctgtccctgtctaacttcacccagaggacgccggtggccatggcgatgtgg
agcctctcctgtttctttgtctccgcctccacctcccagtggatctctgccctactgcca
catgtgatcagccgtatgggctccagcgaggtggtggacgtcaacctgttctgcctggtg
gccatggacttctaccggcaccagatcgacgaggagctcgaccgcagggccttccagtcc
gtgttcgagaccgtggcctcgccggggagcccctaccaccagctgctgggctgcctgcag
tccatccaccaggacacgtccctctga
DBGET
integrated database retrieval system
