Pseudochaenichthys georgianus (South Georgia icefish): 117451193
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Entry
117451193 CDS
T09629
Symbol
shank1
Name
(RefSeq) SH3 and multiple ankyrin repeat domains protein 1
KO
K15009
SH3 and multiple ankyrin repeat domains protein
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ank_2
SAM_1
Ank
Ank_4
SH3_2
SAM_2
Ank_5
PDZ_6
PDZ
SH3_9
FERM_f0
SH3_1
DUF2457
SAM_PNT
Motif
Other DBs
NCBI-GeneID:
117451193
NCBI-ProteinID:
XP_033945251
LinkDB
All DBs
Position
8:17558217..17640850
Genome browser
AA seq
2458 aa
AA seq
DB search
MTMPFSPLSSDEEHQRMLGNNRHLYPGAENEEEEEEEEEEMEEEEHEEDQEEENGELEGE
EEDYEEEVVEEVRRDGVLRVGRAEGHRQSGKVAGRPAGDRQVRTGNPGHTANPYSSNPGP
THQPPANHVPPQQPPQQRRLKERSTGSLPSEDTHIAMMVFRIGIPDIKQTKCLRFNPEAT
VWKAKQQVLCSLTESLRDVLNYGLFQPATDGHDAKFLEEERLLREYPQSFEKGVPYLEFR
YKTRVYKQTNLDEKQLAKLHTKASLKKFMDYIQTSAVDKMTKFLDKGLDPNYQDPDTGET
ALSLAVQCEPGGGESIRVLVEGGAHIDFRAKDGLTPLHKAVRGHRHTALLVLLSLGASAD
YKDRRGLTPLYHTVLTGGDTSCCETLLYHHAKLGIRDENGWDETHQACQNGNSQHLEHLL
FYGADSSSQNASGNTALHICALYNKESCSRILLYRGANKDTKNNSGQTAFQVAVMSGNFE
LGEIIKNHRDTDVVPFVESPKYAPQRRESTRTLTIPHPHPFLRANSDSSMNLPDWMAVPN
APGTNIVSVQGYKHTGTLRSSSSPRGARTRSPSRGRIGDKEDRSRQSRRQGPAPATTAAQ
NAGQRRRLYSAVPGRVFVATRSHSAQGEREISFNKGERVKVLSVGEGGYWEGTVRGRTGW
FPSDCVEEVMLRSQDNRSESRGERAKRLFRHYTVGSYDSFDAPSDYIIKEKTVLLQKKDS
EGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAGLRMGDFLIEVNGQNVV
KVGHRQVVNMIRQGGNSLMVKVVMVTRNPDMEEGSRKKIPQQSKRLSTPAIALRSKSMTS
ELEEMVERAATPWKKKSEFESSQVTEKKRTVYQMALNKLDEILAAAQQTISTNEAPGTRG
QGPKRDRGRSFYGNEPNYGDQSGMGVMSSGLGLGYDRGQFTSGHGPPHGMLRQKSIGAVE
DERQFLHPPAMKFARSLSVPGPDEIPPPPTTAPPEPPFSSAPPLGWRAKSSQQPSVSVSQ
STATSAHYQPYSQPVHFTHGGRERAGGPGTGPSGGAVDHTTSYAHAAAHTAQSRTASRKV
AYTGEPGGAGSGAGGGAGGGAKAAGLRRGYSTAVPPSSIATVMPQQQQPVQSQSHRAERS
AAGAGGPKGGARRGKGPLVKQSKVEDLRLSQGTLGGKGTVEKSSIPIPTIIVKAPSTSSS
GRSSQGSSVEADVPASGEADEAKTAHGPPPSSPAPQPPAPPSIPAPPPPSLPSMRAQDNM
DYTSQFGAAIVGAARRDRERFHELRRKGSSMFMSADEDVILGGGSDGISRTQVSQQQLST
QAESSSTRLRPSKSIDEGMFSGDSFIHHTRSMPPAFDLPEYSSAAQDYQPKSVPTDLYTG
RQSASSCKTTFIHPLTGKALDPTSPLGLALAARERALRDDSRIRRGTEPNFTRQMSSGGF
PSSSVTSQPVSSTAQSSSSSYLVTSSSLAATTVTVGRPPSPRILRGVGSVWNEEGGGGER
EREGGGAREGLRVRFSEDKTVHTHHYQSQPFQPSYKERERERSRERERSREREMSREREM
SREREREQEREGYLRRAEQAADSAAQQGSQQPQRPSFLRMESQADAYILSLTPPSPPPTG
TQQTASSTGSTGSGLMVLPPPAPSIDADDEFVYADPLPPPLQFANSFDRGMGGMSGYSQH
GMRPNSLLSRQQQVPPPPPPPPPPPPPPPTTQKESFIGGFPAHTPLPSPQAGDSTASSLT
SYDSEVANLTQSAHSPSQTSPNPLPSHSPSTLQPTSASRPPPPPSVSPPPPPGSYHRPFS
MSHPQHLYNSSHTPGRSPTPPPHTVTPPLAYRGPQAPSSTAATPAPHRGAASHAMTASCA
ATTTAAATTTSTSTQLYQERTHTTHTTSSTAISRKTGEHRRPTPTTKKGESLETVVDSGI
EELDSRSSSDHHLDSILAGVRGDRLDRGERGGRMGGQGGTGESERGGDFLESYMSYLDGQ
SFEMQNATAATSTYPKSNRFREGGRTSDIHRQTSTAPASFHSHRQREEQTEDEADDGVDE
SGRDRYGSRDMHLGRPVSPYFDRPRTPEMKPLWDEGQMAGDQSASLLEGKKIYPPASSMK
PSIINELNSKLQQRTKETWSSQRALSRHRFSEDSASALSPPPARSTSPSPISLSQPSLSP
SPTPTPTPTSQYPNWGRSPSPQPQVASQPPRSQSPLSPTGYAPYPTSPKHRPVYRTKALE
FQFIPSRESRKAESHMMQRRRAPSPLISPSERPKVDPPRPSSLPLLPTTPLYSAMYDLRG
SVTPPSPGNPLGDPYFSPSPPLFAPSGAPPPPNNALVVSRSLSPTHFLSGTSSPPMHPHP
PPTCLSYPHLPPPSPTKPFAAKPLPYWTKYDVADWLGYLNLGEHRDRFLDNEIDGSHLPS
LTKDDFLDLGVTRVGHRMNIERALRTVMDRLSSSPFPISVLSPRDGQIDRRRDDGSRS
NT seq
7377 nt
NT seq
+upstream
nt +downstream
nt
atgacgatgccgttcagccccctgtccagcgacgaggagcaccaaaggatgctgggaaac
aatcgacatctctatccaggggcagagaacgaggaagaggaggaggaagaggaggaggaa
atggaggaagaggagcatgaggaggaccaggaggaggagaatggcgagctggagggggaa
gaggaagactatgaagaggaggtggtggaggaggtcaggcgagacggcgtgttgagggta
ggcagggctgagggacacaggcagtcaggtaaagtggccggacgacccgcgggggacaga
caggtccggacagggaaccctggacacaccgcaaacccctactcgtccaatccgggaccc
acgcaccaaccgccagccaatcacgttccgccgcagcagccgccgcagcagaggaggctg
aaggagcgcagcaccggctcccttccatctgaagacacccacattgctatgatggtgttc
cgcattggcatcccagacataaagcaaacgaaatgtttgcgctttaacccagaggccacg
gtgtggaaggccaagcagcaggtgctgtgctccctgaccgaatctctgcgggacgtcctg
aactatggtctgttccagcccgccactgatggtcatgatgccaaattcctggaggaggag
aggctgctcagagagtacccacagtcctttgaaaaaggggtaccatatttagagtttcga
tacaagaccagggtgtacaaacagaccaatctggatgagaagcaactagccaaactgcac
accaaggctagtctgaagaaattcatggattatatccaaaccagcgctgtggacaagatg
acgaagttcttagacaaaggcctcgatcccaactatcaggaccctgacaccggcgagacg
gctctgtccctggcggtgcagtgtgagccgggtggaggggagtccatccgggtcctagtg
gaggggggggctcacattgacttccgcgccaaagatggactcacacccttacacaaagct
gtgcgaggccaccgccatacagccctgctggtcctgctgtccctgggtgcgtctgcagac
tataaggaccggcgagggctgacaccgctctatcacactgtgctgacggggggggacacc
tcctgctgtgaaacactgctctaccaccacgccaaactgggcatcagggacgagaacggc
tgggacgagacacatcaggcctgtcaaaatggtaactcgcagcatctggagcacctcctc
ttctatggggcagattcttcctcccagaatgcctctggaaacactgccttgcacatctgt
gctttatacaacaaggaaagctgctcgcgaatactgctctacaggggagcaaataaagac
acaaagaacaacagtgggcagaccgcttttcaggtggctgttatgtcaggcaattttgag
ctgggagaaatcatcaaaaaccaccgggacacagatgtggttccctttgtggaatctcca
aagtacgccccgcagaggagagagagcacccgtaccctgacgataccccaccctcacccc
ttcctccgagcaaacagtgacagcagtatgaacctcccagactggatggcagtgcccaat
gccccagggaccaatattgtctctgtgcagggctataaacatacaggaacactgcggagc
tccagtagtcccagaggggcgaggacgcgctccccgtcccgaggaagaatcggagacaag
gaggaccgcagcaggcagagtcggagacaagggcctgcccctgccaccacggctgcacag
aacgcaggccagcggagacgcctttacagcgctgtcccaggacgagtctttgtagctact
cgatcacattctgcccagggagagagggaaatcagctttaataagggtgaaagggtcaaa
gtgttgagtgttggcgagggcgggtactgggaggggacggtcagggggcgcacaggctgg
ttcccctctgactgtgtggaggaagtgatgcttcgaagccaagacaaccgatcagagagt
cgtggagagcgggccaaaaggctgttccgtcattacacggtgggatcctatgacagcttt
gatgctcccagtgactacataataaaggagaagacagtgcttctacagaaaaaggacagc
gagggtttcggctttgtgctaagaggggccaaagctcagactcctatcgaggagttcacc
cccaccccggctttccctgctctgcagtacctggagtctgtggacgagggaggggtcgcc
tggagagccgggctcaggatgggggatttcctgatagaggtcaatggtcagaatgtggtg
aaggtcggtcaccgacaggtcgtcaacatgatccggcaggggggaaacagccttatggtg
aaagttgtcatggtaacccgcaaccccgacatggaggagggttcgaggaagaaaatcccc
cagcagagcaagaggctgagcacccccgctatcgccctacgatccaaatccatgacttca
gaactggaggagatggtagagagagctgctaccccttggaaaaaaaaatcagaatttgaa
tcctcccaagtcacagagaagaagaggacagtctatcagatggctttgaataaactagat
gaaattcttgcagcagctcagcagaccatcagcaccaatgaagcaccagggacacgggga
caggggccaaaaagagacagaggacgaagtttctatggcaatgagccaaactacggggat
cagtctgggatgggggtgatgtcgtctggattgggcctcggctatgaccgtggccagttc
acctcaggtcacggcccaccgcacggtatgctgcggcagaagtccatcggggcggttgag
gacgaaaggcagttcctgcatcctccagccatgaagtttgctcgcagtctgtcagtgccc
ggcccagacgaaattccccctcctcccaccacagcaccaccagaacctccattctcctct
gctccgccacttggttggagagctaagtcctcccagcagccctctgtctctgtgtctcag
tccacagccacctctgcacactaccagccctactcccagccagtgcacttcacccacggg
ggcagggaaagggcagggggtcccggcactggccccagtggtggagcagtggaccacacc
acctcatatgcacacgcagctgcccatactgctcaaagcaggactgcttcgaggaaagtt
gcctatactggagagcctggtggagctgggtcaggggctggtggaggggctggaggaggg
gccaaggcagcaggtcttagaagaggctacagcacagcggtccccccctccagcattgcc
actgtaatgccccagcaacagcagcctgtccagagccaatcccatcgcgcagagcgcagt
gcagctggagcaggcggtcctaaaggaggggcccggagaggtaaaggccccctggtgaag
caatccaaggtagaagacctgcgcttgagccagggtacactggggggcaaaggcacagtg
gagaaaagctccatccccatccccacaataattgtcaaggccccttcaaccagcagcagt
gggcgcagcagccaaggcagcagtgtggaggccgatgttcctgcatcaggggaggcagat
gaagccaaaacagctcatggtcctcccccctccagtcctgctccgcagccccctgcccca
ccttccatcccagcaccgccgcctccatccttaccctcaatgcgtgcacaggataatatg
gactatactagccagtttggtgctgccattgttggcgctgctcgccgagacagggaacgg
tttcatgaactccgccgaaagggttcctcaatgttcatgtctgctgatgaggacgtgatt
cttgggggagggagtgatggcatttcaaggactcaagtgtcgcagcaacagcttagcaca
caggctgaaagctcatcaacacggctgcgcccctccaagtctattgatgagggcatgttc
tctggggacagctttatccatcacacccgcagtatgcctccagcctttgacctacctgag
tactcctcagctgcccaggactatcagcccaaatctgtacctactgacctttacactggc
aggcagtccgcatcctcttgtaaaaccaccttcattcaccctctaacaggaaaggctctt
gaccccacatcccccctaggtctcgccctcgctgcgagagagcgtgctctgagggatgac
agcaggataaggaggggaacagagcccaacttcacccgccagatgtcgagtggggggttt
ccttcttcttctgtcacctctcagccagtgtcttccaccgcccagtcctccagctcctct
tacctggtcacctcgtcttctttggctgctaccacggtcactgttggccgcccaccctca
cccagaatcctcagaggagtcgggagtgtgtggaatgaggaaggcggtggaggagagaga
gagcgggaaggaggaggggcacgtgaggggctaagagttcgcttttctgaagataaaacg
gtccacacacaccactaccagtctcagccgtttcagccatcctacaaggagagggagcgg
gagaggtcgagggagcgggagaggtcgagggagagggagatgtcgagggagagggagatg
tcaagagagagagagagggaacaagagagggagggttacttaaggagggcagagcaggct
gctgatagtgctgctcaacaggggtcccagcagcctcagagaccctcttttctcaggatg
gaaagtcaagctgatgcctatatcttgtctctcacccctccctctcctccccctaccggt
actcagcagacagccagcagtactgggagcactgggtctggtttgatggttcttcctccc
cctgccccttcaattgatgcggacgatgagtttgtctacgcagaccctctcccacctccg
ttacagtttgctaacagcttcgacagggggatggggggaatgtcagggtactcgcaacac
gggatgcgccccaacagcctgctttcccgccaacagcaggtcccgccccctccacctcca
cctcctcctccaccacctccccctccaacaacccaaaaagaatcatttataggtgggttt
cctgctcacacacccctgccctcacctcaggcaggggactccactgcctccagcctcaca
tcgtatgacagcgaggtggctaacctgactcagtccgctcactccccctcccaaacctca
cccaaccctctgccctctcactcgccctctaccctgcagcccacctcagcatcgagacct
ccgcctcccccctcagtctcgccaccgcctcctcctggatcctatcacagacccttctct
atgtcccacccccaacacctttacaacagctctcacacgcctgggcgctcccccacgcct
cccccacacacagtcacgccccccctggcctaccgtggtccccaagccccctcctccact
gctgccacccccgctccacataggggcgctgcctcacatgccatgaccgctagctgtgcc
gctacaaccaccgctgctgccaccacaacaagcacatccactcagctctaccaggagcgc
acacacaccacacacacaacatcgtccactgccattagtcgcaagacaggggagcaccgc
cgtcccacccccactaccaagaaaggagagtccctggagacggtggtggactctgggatt
gaagagctggacagccgcagcagcagtgaccaccacctggacagcatcctggccggggtc
cggggagacaggctggaccgtggggagaggggaggacggatgggaggacagggcgggaca
ggtgaatcagaaaggggaggagattttctggagtcctacatgagctatctggacggacaa
tcttttgagatgcagaatgcgacagcagccacctccacctacccgaaaagcaacaggttc
agagagggaggtcgcaccagtgacatccacaggcagaccagcactgctcccgcatccttc
cactcccacagacaaagggaggagcagacggaggacgaggctgatgacggagtggatgaa
agtggcagggatcggtatggctcgagggacatgcatttgggacgtcccgtttcaccgtac
tttgatcgccctcgcacccctgagatgaagcctctctgggacgaggggcaaatggccggt
gaccaatctgcatcacttttagaggggaagaagatttaccctcctgcatccagtatgaag
ccaagcatcataaatgagctgaacagtaaactgcagcaaagaaccaaggagacctggagc
agccagagagcgctgagcagacacagattttcagaagactcagcctcagctctgagcccc
cccccagctcgatccacgtcaccgtctccgatttcattatcgcagccatcattgtccccg
tccccgaccccgaccccgacccctacttcccagtaccctaactggggacgttccccatct
cctcaacctcaagttgcctctcagcctccacgttcccaatcccccctgtccccaacaggt
tatgctccttacccaacttcccccaaacacagacctgtgtaccggaccaaagcactagaa
tttcagttcatcccgagtcgagagtcccgtaaagcagagtcacacatgatgcagcgtagg
cgagcacccagccccctcatctccccctcagagaggcccaaggtggatccaccacggcca
tcttccctcccgctgctccctaccactcctctctacagtgctatgtacgacctccgaggt
tcagttaccccaccatcacctggaaaccctcttggagatccttacttctcgccttcccct
cctctgtttgccccctctggtgcccctcctcctccaaacaacgctttagttgtttctcgc
tccctctccccaactcacttcctgtcagggacctcttctccgcccatgcatcctcaccct
ccacctacatgcctgagttatccccatctaccgcccccttccccgacaaagccttttgcc
gccaagccgctgccctactggaccaagtacgacgttgcagactggttaggatacctgaac
ctgggagagcacagagatcgtttcctggacaacgaaattgacggctcccacctgccctcc
ctaacgaaggacgactttctggatctgggtgtaacacgtgtcggccaccgcatgaatata
gagcgtgccctgaggacagtaatggacaggctgtccagcagcccatttcccatttctgtt
ctctcaccccgggatggacagattgacaggaggagggacgatgggagtcggagctga
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integrated database retrieval system
