Pseudochaenichthys georgianus (South Georgia icefish): 117451665
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Entry
117451665 CDS
T09629
Name
(RefSeq) LOW QUALITY PROTEIN: trinucleotide repeat-containing gene 6B protein-like
KO
K18412
trinucleotide repeat-containing gene 6 protein
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pgeo03019
]
117451665
03036 Chromosome and associated proteins [BR:
pgeo03036
]
117451665
Messenger RNA biogenesis [BR:
pgeo03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
117451665
Chromosome and associated proteins [BR:
pgeo03036
]
Eukaryotic type
Gene silencing
piRNA pathway
117451665
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TNRC6-PABC_bdg
RRM_occluded
RRM_1
Motif
Other DBs
NCBI-GeneID:
117451665
NCBI-ProteinID:
XP_071060211
LinkDB
All DBs
Position
8:31850007..31873123
Genome browser
AA seq
2137 aa
AA seq
DB search
MEDKNKKKEDKKKRETSQKVPEQKIKVPESANLATPGSVSPSPGPVVPSSPSPGAAGVSA
QVPPGGGNNAKQRTAVANGQPTSSPSGSQTSQQQRYMSREVPPRFRCQQDHKVLLKRGQP
PLSSMLLGGGAGDGGVGGSSGWAGAPSLSSQGGDANIAGGADSNLGSSSTSHPNSSSSCV
AALSSSSSTTTSTYANSTWGAGSGSQSSSQGCGKVIVDRTDLGDWPSILGGANSSSDGAG
GGGDEQEQDCPGNNNNSSASWSERNIQQKGAAGGAGNMDNPSSPRSSPLSPSSSSLNECV
QSSGGAWSSSSSSQAETGLGSAAFYNSKVSHILPGPQESPAGGSGGGSSGVPGANFNPDV
NPSAWPALATGGTSPPAGDGLPLHSSITPASSFSASAALITTHPLSSVNQPGVHQTQTAV
GGAQQHLGNLGPESGSRGPNQEGEERDCGGAEGEGSVGALSSSSAASSSWRSMPPVSSDP
SAGGSSQADGWGGAGSGGAGSGAQGQDGGVWGFGSQGDKGGWGRGNDGSSNTTAVSQGAW
EGGSSEGEWGGTAGGVSSSNTAIGRGGDGSSNSSSSGGSGGGALKDSTSPKSATMTKAWD
NQKGMESGDGDGDGEWGGGQVGGPAVGAPSSSSGGGSTAGSGGGGSDSGHKQEQASSEQP
SSERTSNADVALQCMLNRSDLDPRILSNTGWGQTQIKQNVAWDLDPATGQRSRNERSASS
SSAFSSSTVNTTTSRSYPSNTSSITNDPSSSGARDGWEGGAPQTTSGPHMGGSSARKPAA
PEEAGGWGEPPPESQGKGWGTEEKKWGDHRGGEGRGGEGRGGEGREGRGGEGRGGEGRGG
EGRGEGRRGGEGRRGGEGRGNWRDYGEQGTGWTDGPEDKGTSGWKGSGRGEAGGWGGDRG
QRDSMPGGGDGRSRGGNHSDEKGSSWGHSDDSQGGGGGDVGGGKSHQDWGSSKAHAAAAA
AQIPNSQVAPMKAPNQQQHQSQGPPQQGGPAHGGPAHGGPAHGGPAHGGPAHGGPAAHGG
PAAHGGPAAHGGPPAHGGPPAHGGPPAHGGPPAHGGPPAHGGPAQGGWNSRSNVGDGAPP
PKNQNQSSGWTSGPIPEVSGAAVDSLEPSGWEEPSPQSISRKMEIDDGTSAWGDPTRYKS
KNVNLWDKKNATPGQQAPPPSIQQQQQQQQPPPPRRQQGMQHSRDVNPGNTAAGPGMWGG
GAPSADNGANTWGQSSDASSGWGEPEEPSKSSGWGNPSPNPGKPGNKSTEGWGGKGESSV
AASRHPSWDEEDDGGGGVWNCSGSQGNNSSYNSGGWGQSHGGKRGNMKSGGGDSWMNPVS
RQFSNMGLMGDDPSLDKKMEGDKRGMTDYNGEMRRGGRGGGGGGGGGYRMPSSKDMGPVD
MGPYGEKMGGHGGYVGSGGGMPPPRGMHQPGMHPMNPSQGLRAQVPHQYLSAQVPGPMLK
QMPSPGGSAGGVVGGVGGVGGVGSVGGVGGVGGGGFPPQISPQQLAMLGNIYPHMQQFHL
ACQLLLQQQQQQQLLQNQRKFPQPQPQPLRQQPDPQQLAKIMAILQQQRQHQQGGVGGAA
PGGGSSKLSPSHLGGGLSKQPMGDPLAHPGMGGALSDLHAKTQGMYSGLAPGGGLAPGAG
LELGPMMGGMKDTGGQQSRYKWMMEGHSPAPSPPDAALHKNGPLPSGMKVRGGSPYSQYE
MLGSDGMGIPPQGSADNWHRTPGSKMGNKPATSSWPPEFQPGVPWKGIQSSGDPDSDPYM
TPGSVLGSPGPPSLNDSDHQLLRDNIGPNPSLNTSLPSPGAWPYSASDSPLSNAHSTGKY
SEYKPSWPPEPIGQNKMWKTNRNSSQLPRPPPGLANQKQASPSPWGSGGPRMARNWAGSG
INQESRYGPGSTWSDGVTPRGSCWLLLSNLTPQIDGSTLRTICMQHGPLLTFHLGLTHGS
ALIRYSTRQEAAKAQGALHMCVLGNTTILAEFVSEEEVARYFAHSQAGGSEGSGSGGSAA
PGGSQGSPGPGPAAASGGGSSPGSERAATGTTPGGNGNGGGGGGDGGAAAALAGGRSSGS
AWQSLDGTGSSSEASSAQGPGPGLGVFSQWSHKGEGGGVVGGVDSARSGLWGGMTAGYPS
SSSSSMWGAPQMEERHQMDSPAALLPGDLLGGGADSI
NT seq
6414 nt
NT seq
+upstream
nt +downstream
nt
atggaagacaagaacaagaaaaaagaagataaaaagaaaagggaaacctctcagaaggtg
ccagaacagaaaatcaaagtgccagaatcagccaatctagccaccccaggctcagtgtcc
cccagccctggccctgttgtcccctcgtctcccagtcctggtgcagccggggtttctgca
caagttcctcctggtggcgggaacaatgcaaagcagcggactgctgtggccaacggacag
cccacctcctccccctctggaagccagacctcccaacagcagcgatacatgtccagagag
gttccgccgagatttcgctgccagcaggaccataaagtgctactgaagaggggccagccg
ccgctgtcctccatgctactggggggaggcgcaggggacgggggtgttggaggaagcagt
ggctgggcaggcgccccatcgctctcctcccagggaggcgatgcaaacatagctggaggc
gcagattccaacctgggttcatcctccacttcacatcccaactcatcctcatcatgcgtc
gctgctctgtcgtcgtcttcttctactactacttcaacttatgcaaattccacttggggg
gcgggctcgggcagccagtcctcttctcagggctgcgggaaggtaatagtggacaggacg
gacctgggggattggcctagcatcctaggaggggccaactcgagttctgatggggccgga
ggaggaggtgatgagcaggagcaagactgccctggaaacaacaacaacagtagtgcctcg
tggagtgagagaaacatccagcagaagggagcagcaggaggagcagggaacatggacaat
ccttcctcgcctcgttcttctcctctttccccctcttcttcctcgcttaatgaatgtgtt
cagtcgagtggcggcgcgtggagctcttcctcctcctctcaggcggagacggggctcggg
tcggcagcgttttacaattccaaagtctcccatattcttcccgggcctcaggagagcccc
gcaggtggcagcggcggcggcagcagcggcgtccctggtgccaatttcaaccccgacgtg
aacccctccgcctggcccgccctggcgacaggtgggacgtcgcctccagctggcgacgga
cttccactacactcgtccattactccggcttcctcgttctctgccagcgccgcactcatc
accactcaccctctctcatctgtgaatcagcctggcgtccatcagacacagacggctgta
ggtggagctcagcagcacttaggaaacctcgggccggagtcgggttcaagaggaccaaat
caagaaggcgaagagcgggactgcggaggggcagaaggagaagggagtgtcggcgctttg
tcttcctcctctgccgcctcttcctcttggagatccatgcctccggtgtcctccgacccg
agtgcaggtgggagctcgcaggcagacgggtggggtggagcaggaagtggtggagcagga
agtggagctcaggggcaggacgggggtgtgtggggctttggaagccagggtgacaaggga
gggtggggcaggggaaacgatggtagctcaaataccacagcggtatctcagggagcgtgg
gaaggaggcagttcagaaggggagtgggggggcacggcgggaggtgtaagttcgagcaac
acagcaataggaagagggggagacgggagcagcaacagcagcagcagtggaggcagcggc
ggcggcgctttgaaggactccacctcaccaaagtcggcaactatgacaaaagcttgggac
aatcagaaagggatggaaagtggggatggggatggggatggggagtgggggggagggcag
gtgggaggcccggcagttggggcgccttcgtcctctagcggaggagggtccacagctgga
agtggtggaggagggagcgacagcggacataaacaagagcaagcctcgtccgaacagccg
tcctccgagagaacctccaatgctgacgtggccttacagtgcatgctcaatcggtctgac
ctggacccccggattctttccaacaccgggtgggggcaaacccagatcaaacagaatgtg
gcctgggacctggaccccgcgacgggacaaagaagcagaaacgaaagaagcgcttcatct
tcctccgcattctcatcgtccaccgtgaacaccaccactagtcgcagctacccgtctaac
accagttcaataactaacgatccatccagctccggagcgagggacggctgggaggggggc
gctccgcagaccacctccgggcctcacatgggtggtagctctgcgaggaagccagcagcg
ccagaagaagctggaggatggggtgagccccctcctgagagccagggcaaaggttggggg
actgaagagaagaagtggggtgatcacagaggaggagaaggacgaggaggagaaggacga
ggaggagaaggacgagaaggacgaggaggagaaggacgaggaggagaaggacgaggagga
gaaggacgaggagaaggacgaagaggaggagaaggacgaagaggaggagaaggaagaggg
aactggagagactatggagaacagggtacagggtggacagacggtccagaggataaaggg
acctcggggtggaagggcagtggaagaggagaagccggtggttggggaggagaccgggga
cagagggactccatgcctggaggtggagatggacgaagcagaggaggaaaccactctgac
gagaagggatcttcctggggtcattcagatgattctcaggggggaggagggggagatgtg
ggtggaggcaaatctcaccaggactgggggagttccaaggcccacgcagcagcagcagca
gcacagataccaaacagccaagtggcaccaatgaaagccccaaatcaacagcagcaccaa
tcacagggcccgccgcaacaaggaggtcctgctcacggaggtcccgctcacggaggtccc
gctcacggaggtcccgctcacggaggtcccgctcacggaggtcccgccgctcacggaggt
cccgccgctcacggaggtcccgccgctcacggaggtccccccgctcacggaggtcccccc
gctcacggaggtccccccgctcacggaggtccccccgctcacggaggtccccccgctcac
ggaggtcccgctcaaggagggtggaacagccggtccaacgtcggggatggagctccacct
cccaagaatcagaaccaaagttcgggctggacatccggcccgattcccgaagtctccgga
gccgcggtggactccctggagcccagcggctgggaagagccctcccctcagtccatcagc
cgcaagatggagatcgacgacggcacgtcggcctggggagacccgacccgctacaaaagc
aagaatgtgaatctgtgggacaaaaagaatgcgacgcctggtcagcaggcccccccgcca
tccatccaacaacaacaacaacaacagcaaccaccaccacccagaaggcagcaggggatg
cagcacagcagggacgtaaaccctggcaatactgcagcaggtccgggcatgtggggaggg
ggtgcaccgtctgccgataacggtgcgaatacctggggtcagtcgtcggatgcgtcgtcg
ggctggggggaaccagaggaacccagcaaatcttcgggctgggggaacccttcgccgaac
cctggcaaacctggcaacaagtccacggagggctggggggggaagggagagagctccgtt
gcagcttcccgtcaccccagctgggacgaggaggacgatggagggggaggagtctggaac
tgcagcggctcccaagggaacaactcctcctataactctggaggctggggtcagagtcac
ggaggaaagaggggcaacatgaagagcggaggaggagacagctggatgaacccagtgtca
cggcagttttcaaacatgggtcttatgggcgatgacccaagtctggacaaaaagatggaa
ggagacaagagaggaatgactgattacaacggagagatgcggaggggaggaagaggagga
ggaggaggaggaggaggaggctaccgcatgccgagttccaaagacatgggtcccgtagac
atggggccctatggtgaaaagatgggtggccatgggggatatgtcggcagcggcgggggg
atgcctccacctcgaggcatgcaccagcctggcatgcatcccatgaacccctcccagggt
ttacgtgctcaagtgcctcatcagtacctgtctgctcaggtgccgggccccatgctgaag
cagatgccctctcctggtggcagcgcgggcggagtggttggaggagtaggaggtgtcgga
ggcgtgggaagtgtcggaggggtcggcggtgttggcggaggagggttccctcctcagatt
tccccgcagcagctagcaatgctcggcaacatttacccccacatgcagcagttccatctg
gcttgtcagctcctgctccaacagcagcagcagcagcagctcctgcagaaccagaggaag
ttcccccagccccagccccagcctctccggcagcagcctgacccccagcagctggccaag
atcatggctattttgcagcagcagaggcagcatcagcagggtggagtcggaggagcagct
ccaggaggagggagctccaaactgtccccctctcacctgggaggaggcctatccaagcaa
cccatgggagacccccttgctcaccctggaatgggcggcgccttatcggatcttcatgcc
aaaactcaagggatgtattctggcctggcccctggtggaggcctggcccctggtgcaggc
ctggagctcggccccatgatgggagggatgaaggacacgggaggacagcagtcccgctac
aaatggatgatggaaggacactcgcctgctccatccccccccgacgcagctcttcacaag
aatggtcctttacctagtggtatgaaggtgagaggaggatccccttactcccagtatgag
atgctgggcagcgatggaatggggattccccctcaaggctctgcggacaactggcaccgg
acccccgggagtaaaatggggaataaacctgccacatccagctggcctccagagttccag
cccggtgtgccctggaagggaatccagagcagtggagacccggactctgacccctacatg
acccccgggagtgtcctaggctccccgggacccccgagcctcaatgactctgaccaccag
ttactgcgagacaacatagggccaaacccctccctcaacacctcgctgccttcacctggt
gcctggccctacagtgcctcagacagccccctcagcaatgcacacagcacaggaaagtac
tcggagtacaagcccagctggcccccagagcccatcggacaaaacaagatgtggaagacc
aatcgcaacagctcacagctgccacgcccccctcctggcttagccaatcagaagcaggcc
tcgccctccccgtggggcagcggaggcccgcggatggctcgcaactgggcagggagcggg
attaatcaagagtcgagatatggcccaggctcaacgtggagcgatggtgttacccccaga
ggaagctgctggttgctgctgagcaacctcacccctcagattgacggctccacgctgagg
acgatctgcatgcagcacggcccgctgctcaccttccacctcggcctgacacatggcagc
gctctgattcgctacagcacccggcaggaagcagccaaggcccagggtgcactgcacatg
tgtgtcctgggcaacaccacgatcctggcggagtttgtgagcgaggaggaagttgctcgc
tattttgcacattcccaggcgggagggtctgaggggtctggctccggagggtcagcggca
ccaggcgggtcgcagggttctcctggaccgggccctgcagcggccagcggggggggcagc
tccccggggagtgagcgggcagcgacgggcacaactccaggtggaaacgggaatggagga
ggaggaggaggagatggtggagcggcggcggctctggctggggggaggtcctctggctcc
gcttggcagagtctcgacggtacaggaagttcatcagaagcttcgtcagcccaaggaccc
gggcccgggctgggtgttttctcccagtggagccacaagggggagggagggggagttgtc
gggggggtggactctgccaggtctgggctgtgggggggcatgactgcaggataccccagc
agcagcagcagcagcatgtggggggccccgcaaatggaggaaaggcaccaaatggacagc
cctgccgccttgttgcctggcgacctgctggggggaggagctgactccatctga
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