Pseudochaenichthys georgianus (South Georgia icefish): 117451980
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Entry
117451980 CDS
T09629
Name
(RefSeq) dmX-like protein 1 isoform X1
KO
K24155
rabconnectin-3a
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Pathway
pgeo04142
Lysosome
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome
117451980
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pgeo04131
]
117451980
Membrane trafficking [BR:
pgeo04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
117451980
Endosome - Lysosome transport
Acidification regulators
Rabconnectin-3 complex
117451980
RAVE complex
117451980
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rav1p_C
WD40
Beta-prop_THOC3
Beta-prop_WDR3_1st
Beta-prop_WDR5
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_TEP1_2nd
WDR55
Beta-prop_WDR3_2nd
Beta-prop_WDR36-Utp21_1st
Beta-prop_IFT140_1st
Beta-prop_WDR36-Utp21_2nd
Beta-prop_WDR90_POC16_2nd
WD40_Gbeta
Beta-prop_HPS5
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_DCAF4
NBCH_WD40
Beta-prop_EML
Beta-prop_DCAF12
Beta-prop_WDR19_2nd
Motif
Other DBs
NCBI-GeneID:
117451980
NCBI-ProteinID:
XP_033946265
LinkDB
All DBs
Position
9:23100268..23157138
Genome browser
AA seq
3092 aa
AA seq
DB search
MNLHQVLTGAVNPGDNCFSVGNVNHVPFTAYASGCDVVILGSDFERLQIIPGAKHGNIQV
GCVECSLQGGQIAASYGSIVCVFEPVQPPDQKDTSLPKLNCQWQKTGQFVLKSMVRNLAW
HPTGSTLLTGSSSLQLWSHIDEVNDEAEEGGRQKEMTIGDFLSAWRCIWESKTASPVSLM
KFSPDGEFFATAGQDDCLVKVWYSTGKWKLGVSRRFTPPEPSDSFQAKLAFSFVYLAHPR
SVTGFSWRKTSKYMPRGAVCTVLLTCCKDSVCRLWAETLLPGDSLLSGYHSNHTSGQHND
TPRSAGPSWKNACNGKSQGKMAQGSNFQESLHASFHRDVPQPSLTSCLPHNLSRHYNHKR
SSSSSMPHANALCHFHIAASINPATDIPLLPSISSLSAADDEEPGGPFTVHWLNNKELHF
TLAMEVFLQQLQGSLEQQNECSNEEPEDEENCDEDNGSRPVDSQEPEAVELPLAAVKHQV
NVLLEEWNKGADMLFSIHPMDGSLLVWHVDWLDEYQPGMFRQAQVSFVSRIPVAFPTGDA
ISLSHSVVMYACNKNVDLAIQHDRQRPPGSTLPQTKSALISYRGQGKTAPSSSLRLSIFT
PNVLMISKHSDGSLNQWAVSFAEDSAFSTVLSVSHKSRYCGHRFHLNDLACHSLLPLLLT
TSHHNALRTPEADSILAPPDTYSSGFSHPASLPRGSRPSKSSLGVVSQDPNAIYSELILW
RVDPVGPLSLSGGVSELARINSLHASAFANVAWLPTFIPSSCLGVYCNSPSACFVASDGH
SLRLYQAVIEAKKLLSELSNPEISKYVGEVFNIISQQSTAKPGCIIELDAITDFQGKQTQ
LLHVFEEDLILGSERTEDTQETPDSPHTASSDTAFSARFFLVVVELTPTGRSLLHMWHLH
LAARPITTEETSTKNDSSSASDMNSSTFSFDTFGSPVPQKSKPCTSNLQSACRLSLTTHR
LYSQEMALPEGVEAISVTPSAGHLSASCSLPADRLPYLLATSCSDGKVRFWRCTVMEPSS
MDNLVYQWEEWPLLVEGMLPNSSAVSVQGHPIEVSCCHSGRIAVAYRQTPNSPLNSTPYL
NSQGLLTCPPTLACSPFINSINTHMTPTVTVQHSPNLTPSPNQANTNEPLVQVHISIFQC
ESTGGSQWILEQTIVLDSTESANIPSAMDCPIPNQYCPASSSASLVHLDWVSQEDGSHVL
TVGIGTKIYMYGRLSGKPPELGLSSEASRDLSSSRLVLLRSVNLVSSVEGSLPIPVSLSW
VRDGILVVGMDCEMHVYSQWQPPAPLKASVAQDTDMSSSVSSIISAVRQSQEEGLSFGAP
MSTLAPPKRALTRSMMSLAQKLSGKRTAYDLPLEKEDSGLFEAAHQLFPTLPQYHPVQLL
ELMDLGRVHRAKAILSHLVKCIAGEIVALKDSTTNPEKRLRSRTISAGGSTARDSKMFSK
AENSPPDYTEISSIPPLPLYALLAADDEDTSPKPDKVGSVSGDSGHGSSHADVYDELFQA
PSIVDLDPLEDDQEETGNKVIDLSQYSPTFFGPEHAQVLSSHLLHSSLPGLTRMEQMSLM
ALADTIATTSTDLKDSQGKSKGGETLDECGLKFLLAVRLHTFLSTSLPPAHRAQLLRQGL
STCHYAWAFHSEAEEELLNMLPALQKGELTWPELRSMGVGWWLRSTNKLRKCIEKVAKTS
LQKNNDPLDAAIFYLAMKKKAVVWGLYRSQRNAKMTEFFRNNFSEDRWRKAALKNAFSLL
GKQRFQHSAAFFLLAGSLKDAVEVCIEKMQDLQLALVISRLYESEFETASTYKKILRRNV
LGQDKQIPAQKDPFLRSMAHWVLEDYSRALDTLLEQPADRTSSRSTEGKCDTGSSSVSAC
NPEVFNFYTYLRTHPLLLRRHFGSSEKAKVGLTAERRRADSISLEERRLFFTAAYAHLQA
GCPMLALEVLSKMPKVRKHSKLPHHEGAGIAAELSVGSKNGKGSEQDWSQSTLNGYESDR
NSLCNSRSDSVLSFDWSGQPSMAHPDEPLELKWESDKDDDDEEETKNGKSGRTEDGSSVD
AQEAMSPLIETVPGEESEDDFLAPSNDILAAQLKFTACLKIMTNELRTLSTGYELDGGKL
RYQLYQWLEREVVALQRCCSYKPCLPELSAPGGAAVSGLGEEEQPGSPRADIQRSRWHWL
QSNQPLLRMFLSYCSLHGSHGGGLASVRMELILLLQESHQDDSLQAVMPCCQPTSIPLLM
ACTANVKTVVANPIVYLTNLAHDILQTINSLDSPPHPDVVNNEIYVMHTLAASLSACIYQ
CLCDGHTHSHVNHFTGIVYQSVLLSQKQPARTVSMDESVQPNTPPAQWPGIASLIRLLSS
AGEESQPGLAVLLCEIVTAVFLSLFVHGMATHSSNELFRIVAHPLNSQLWVSVFGGGART
PVIEKPTSLTRTPPPASPSGSDRKSRRFRLLSSRSGSKDEAGIEREGPSSPKHSPVVKQE
ATSIFKERFIPPELSIWDYFITKPSLPQSENQIEYDSEESQDSQDEEEDDDQYEDVFDPS
SPHREHSNHNSYSWCLMRLAMVQLVLVNLKTFYPMAGYDLLDLPVCSPLCHAVLKTLQRW
EQVLQKRLEIFGGPPSKYISTTPQDETTAPGPALLRHKALFEPSNTPFRTSHHSALPVKR
LWQYLVKQEEVQETFIRNIFTKKRDPNEASEDQTDNMKCSGIEETGNHQAESDLGSPGGK
SRIIHKESDIITAFAINKANRNCLVMASTHDIQELDVSSILATQILTWIDDEEAEAKGVA
DDFLVVHARDDFATIHGTTPYTHSSPGTPINMPWLGGVQTGRGAAVMIKRNINNVRRMTS
HPTLPYYLTGAQDGSVRMFEWGHSQQIICFRSPGNSRVTRIRFNHQGNKFGIVDADGGLS
LWQTNTSGTAPKPYLTLHCHNKTANDFVFVGSSSLIATAGLSTDNRNVCLWDTLVTPANS
LVHAFCCHESGATVLLMACRQQLLITGGRKGWISVLELAPRHQRQSFLAHDSPVKALAVD
PTEDCFISGSAEGNIKIWSLATQCPLYNFPNEHARQSLFRNLGTGVMQIEVGPANHIFSC
GADGTMKMRVLPNRFSVANNNNNHNSDVKFII
NT seq
9279 nt
NT seq
+upstream
nt +downstream
nt
atgaatctccatcaggtcctcactggggctgtcaaccctggagacaattgtttctctgtt
ggcaatgtcaaccatgtgccattcacggcttatgcgtcaggttgtgacgtggtgattttg
ggcagtgactttgagcgtctgcagatcatcccgggggccaaacatggcaacatccaggtc
ggctgtgtggagtgctcactgcagggtggacagattgcagcttcctatggaagcatcgtg
tgtgtctttgagcccgttcagcccccagatcagaaggacacatcgctgcctaagttgaac
tgccagtggcagaagactggtcaatttgtgttgaagtctatggtacggaacctggcctgg
caccccacaggcagcaccctcctaacaggctctagtagcctccagttgtggtctcatata
gatgaagtgaacgatgaagctgaagaaggaggaaggcagaaagagatgaccataggagac
tttctttcagcctggaggtgcatctgggagagcaagacagcctctccagtgagtttaatg
aagttctctcctgatggggaattctttgctactgctggacaggatgactgcctggtaaag
gtctggtacagcaccggtaagtggaagttgggtgtttccagacgcttcacacctccagag
cccagtgacagtttccaggcaaagctggccttctcctttgtctacctggcccatccccgc
tctgtaactggcttctcctggaggaagaccagcaagtacatgccacgaggtgcagtgtgt
actgttctgctcacctgctgtaaggacagcgtgtgtcggctctgggcagagacgctgttg
ccgggtgacagcctcctctcaggttaccacagcaaccacacttctggccaacacaatgac
acaccaagatctgctggcccttcttggaaaaacgcctgcaatgggaagtctcaaggaaaa
atggcacagggatcaaattttcaagaatcattgcacgcctcctttcatcgggatgtcccc
cagccctctttgactagctgcctgcctcacaacctgagccgacactacaaccacaagagg
agcagcagcagcagcatgccccacgctaacgcgctctgccacttccacatcgctgccagc
atcaaccctgctacagacattcctctgctgccctccatctcctctctgagtgccgccgat
gatgaagaacctggaggcccttttactgtccactggctcaacaacaaggagcttcatttc
actttagctatggaggtcttcctacagcagctccaaggcagcctggagcaacagaacgaa
tgctccaacgaagagcctgaggatgaggagaactgtgatgaagataatggaagcaggcca
gtcgactcccaggaacctgaggctgtggagctccccctggcagcggtgaagcaccaggtg
aacgtgctgctggaggagtggaacaaaggggcggacatgttgttcagtatccatcccatg
gacggctctctgttggtctggcatgtggactggttggatgaataccagccaggcatgttc
agacaagctcaggtttcctttgtgtcccgtatccctgtggcgttccctacaggtgatgcc
atctccttgagccacagtgtggttatgtacgcctgcaacaaaaacgtagatctggctatc
caacatgacagacagcgaccacccgggagcacattgcctcaaaccaaatcggctctaata
agctacagaggccaaggaaaaactgcacccagcagtagtcttcgactgagcatcttcacc
ccaaacgtcctcatgatctccaaacactctgacggctccctgaaccagtgggcagtcagc
tttgccgaggactctgctttctccactgtgctcagcgtctctcacaagtcacggtactgt
ggccaccgcttccacctcaacgacctggcctgtcactctttgctccctctcctcctcacc
acctcgcaccacaacgccttgaggacgcccgaggcagacagcatcctggctccccccgac
acctactcctctggtttctctcaccctgcgtctctgccccgagggtcacggcccagcaag
tcatccctgggtgtagtttcccaggatccaaatgccatctacagcgagcttatattatgg
agagtagaccccgttggcccgctgtctctgtcaggcggggtgtctgagcttgctcggatc
aattctctccacgcatcagcgtttgctaatgtagcctggctgcccacgttcatccccagc
agctgtttaggtgtgtactgtaactctcccagcgcctgcttcgtggcgagtgacggccac
tcactccggctgtatcaggctgttatcgaagctaagaaactcctgagtgagctctccaat
cctgagatatcaaaatatgtcggggaggtgttcaacatcatcagtcagcaatccacagca
aaaccagggtgtattatagagctggatgccattacggactttcaggggaagcagacccag
cttcttcatgtgtttgaggaggatctgatcctcggcagtgagagaacggaggacacacag
gaaactcctgattcccctcacactgcctcaagcgatacagccttctctgcacgtttcttc
cttgttgtggtcgaattgaccccgacaggtcgctcgctcctccacatgtggcatctccat
ctcgctgcccgacccatcaccacggaagagacctcgacgaagaacgattccagctcagct
tctgatatgaacagctctacgtttagctttgacacgttcggttctccagtacctcagaag
agtaaaccctgcacttcaaatctgcagagtgcctgtcgcctcagcctcacaacacacagg
ctctacagccaagagatggctctgccagaaggggtggaggccatcagtgtgacaccttca
gcaggtcacctgagcgcatcatgctctctgccagctgatcgtctgccttacctgctcgct
acttcctgttcagatggaaaggtgcgtttctggaggtgtacagtcatggagccttcaagt
atggacaacctggtgtaccagtgggaagagtggcctctgctggtggagggaatgcttcct
aacagcagcgcagtgagtgtgcaaggtcatcccatagaggtgagctgctgccactcggga
cggattgctgtcgcctacaggcagacaccaaactcccctctcaactcaacaccttacctg
aactctcagggacttttgacttgtcctcctactctggcctgctccccttttataaacagt
atcaacacccacatgaccccaactgtgactgtacagcatagcccaaatctcacccccagc
cccaaccaagcaaacaccaatgagccattggtccaggtccacatcagcatctttcagtgt
gagtccactggtggctcacagtggattctagagcagaccatagtcctggacagcacagag
agtgccaatatcccaagtgccatggactgtcctatacctaaccagtactgtcctgcctct
agtagtgcgagcctggttcatttggactgggtctcgcaagaagacgggtcacatgtcctc
actgttggtatcggcacgaagatttatatgtacggccgtctctctgggaaacctccagaa
ctgggtttgtcatcagaggccagtagagacctgagctcgtcccgtctggttctactgcgc
tcagtcaatctggtctcctctgtggaaggctccttacccattcctgtgtccctctcctgg
gtgagagatggcattttggtagtaggcatggactgtgagatgcacgtctactcccagtgg
cagcccccggccccactcaaagccagcgttgcccaggacacagacatgagcagcagcgtc
tcctccatcatctctgccgtcagacagagccaggaggaggggctcagctttggggccccc
atgtctacactggcccctccaaaaagggccctgacgagatccatgatgagtcttgctcag
aaactcagtgggaagagaacagcttacgacctgccgctggagaaggaagattctgggctt
tttgaagcagctcaccaactctttcccactctgccccagtaccaccctgtacagctgctg
gagctcatggatctcgggagggttcaccgtgccaaagccatcctgtcccatctggtgaaa
tgcattgctggagaaattgtggctcttaaagacagtacgaccaaccctgagaaacgcctg
cgctctcgaaccatcagcgccggaggcagcacggccagagactccaaaatgttcagcaaa
gcagagaactccccccctgactacacagagataagctccatccctccgctgcctctctac
gcccttctggcagccgatgatgaggacacgtcaccaaaacctgataaagtgggcagtgtg
agtggagacagtgggcacggttctagtcacgctgatgtctatgatgagctctttcaagcg
cccagcatcgtggacctggaccctctggaagatgatcaagaggaaacgggaaacaaggtt
attgacctttcgcagtacagtccgacattctttggtccagagcatgctcaggttctgtcc
agtcacctcctgcattccagtttgcccggactgacccgtatggagcagatgtctctcatg
gcgctggccgacaccatcgccaccacaagcacagacctcaaggacagccaaggcaagagt
aaaggtggtgagacgctggatgagtgcggtctgaagttcctgctcgccgtcagactccac
accttcctctctacctcgctgcctccagcacaccgggcacagctgctacggcaaggcctg
tcgacatgtcattatgcctgggccttccactccgaggctgaggaggagctgctgaacatg
ctgcctgctctacagaagggagagctcacctggccggagctgcgctccatgggcgtgggc
tggtggctgcgcagcaccaacaagttacgcaagtgtatagagaaggttgccaagacttct
ttacagaaaaacaatgatcctctggatgcagctatattttacctcgcaatgaagaagaag
gcagtggtctggggattgtacagatctcagaggaatgccaaaatgacagagttcttccgc
aacaacttcagtgaggacaggtggaggaaggcagctctgaagaacgccttttctctgttg
gggaagcagcggttccagcattctgcagccttcttccttctagccggctccctaaaggat
gctgtggaggtgtgtatagagaaaatgcaggacctacagcttgcactggtgatctccaga
ttgtatgagtccgagtttgaaacggcatccacctacaaaaagatcctccggagaaatgtt
ctgggacaagacaagcagattcccgcccagaaggatccgttcctgcgtagcatggctcac
tgggtcctggaggactacagcagagcgttggacactctcctcgagcagcctgctgacaga
accagctcccggtccacggaaggcaaatgtgacacaggctcctcttcagtgtctgcctgt
aaccctgaggttttcaacttttacacctaccttcgaacccacccactcctccttcgccgc
cactttggctcctcggagaaggctaaagttggactgaccgctgagcgccgcagggcagac
tccatcagcctggaggagaggagactatttttcacagctgcttacgcacaccttcaggct
gggtgccccatgctggcacttgaagtcctctccaagatgcccaaagtccgcaagcattcc
aaactcccacaccatgagggtgcaggcatcgcggctgaactcagcgtcgggagcaaaaat
ggaaaaggttcagagcaggactggtctcagtcgactctgaacggctacgagtcagacagg
aacagcttgtgcaacagccgctcagattcagtgttgagttttgactggagcggccagccg
tcgatggcacatcctgatgagcccctggagctgaaatgggagagtgacaaagatgatgat
gatgaagaagaaacaaaaaatggtaagagcggcagaactgaagacggcagcagtgtggat
gcgcaggaagccatgtcgccgctcattgagactgtgccaggagaggagagtgaggatgac
ttcctcgctccttctaatgacatcttggcggcccagctgaaattcaccgcctgcctgaag
atcatgaccaatgagctacggacactgtccacgggctatgaactggatggagggaagcta
cgttaccagctctaccagtggctagagagagaggtcgtggctctccagcgctgctgcagc
tacaagccctgcttgccagagctgtctgccccggggggggcggctgtctccgggctgggc
gaggaggaacagccggggagccctcgtgctgacatccagaggagcaggtggcactggctg
cagagcaaccagcccctactgaggatgtttctgagctactgcagcctacatggctcccac
ggaggaggactggcctctgtgcgcatggagctcattctgttgcttcaagagtctcaccag
gatgactccctgcaggcggtgatgccatgttgccaaccaacatccatccccctcctgatg
gcctgcacggcaaacgtaaagacggtggtggccaatcccatcgtctacctgaccaacctg
gctcatgacatcttacagaccatcaattcactggactctcctccacaccctgatgttgtc
aacaatgagatctacgtgatgcacacattggctgcctccctgtccgcctgtatctatcag
tgtctgtgtgatggacacacccacagccacgtgaaccacttcacaggaatcgtgtatcag
agtgttttgctgtctcagaagcagcctgcccgaaccgtcagcatggacgagtccgttcag
cccaacaccccccccgctcagtggccaggtatcgcctccctgattcgcctgttgagctcg
gcaggcgaggagagccagccaggcttagctgtgctgctctgtgagatcgtgactgctgtc
ttcctcagtctatttgttcacggcatggccactcactcaagcaacgagctgttccgcatc
gtggcccaccctctcaacagccagctttgggtgtcggtgttcggaggaggcgctcggacc
cctgtcatagagaaacccaccagcctcacaagaacaccgccaccagcctcaccaagcggc
tcagacaggaagtccaggcggttcagactcctgtcctcacgcagcggatccaaggacgag
gcggggatagagcgtgagggcccatccagtcccaagcacagccctgtagtgaaacaggaa
gctacctccatctttaaagaacggtttatcccgccggagctcagcatctgggattacttt
atcaccaagccttcactgccacaatcagaaaaccaaattgaatacgactcggaggagagc
caggacagtcaagatgaagaggaagatgatgatcaatatgaagatgtgtttgaccccagc
tctccgcacagagagcattcaaaccacaactcatacagttggtgtttgatgcgtctggca
atggttcagctggtgttggtcaacctcaaaaccttttacccaatggcaggatatgatcta
ttagacctgcctgtgtgctctcctctgtgtcacgctgtgctgaagacgctgcagcgctgg
gagcaggtgctgcagaaaaggctggagatcttcgggggccccccttcaaagtacatctcc
accaccccccaggatgaaaccacggcgcctggccccgccctgctcagacacaaggccctg
ttcgagccttccaacaccccattcaggaccagccaccattcagcgctgccagtgaagcgc
ctgtggcagtatctggtgaagcaggaggaagtgcaggagactttcatcagaaacatcttc
accaagaaacgggaccccaatgaggcgagtgaggaccagactgacaatatgaaatgttca
gggattgaggagacaggaaaccatcaggctgagtcagatctgggctcccccggagggaag
tcacgcatcatccacaaggaatctgacatcatcaccgccttcgccatcaacaaggcaaat
cgtaattgtttagtcatggcctccacccatgacatccaggagttggatgtgtcatccatc
ttggccacacagatcttgacatggatcgatgacgaggaggccgaagccaaaggtgttgcc
gatgacttcctggtggtgcatgcacgcgatgactttgccaccatccacggcaccacgccg
tacactcacagcagcccgggcacccctatcaacatgccgtggctgggtggggtgcagaca
ggccggggtgcagccgtgatgatcaagagaaatatcaacaatgtgagaagaatgacctcc
catcccacactgccgtactacctgacaggggcacaggatggaagcgtccggatgttcgag
tggggccactcccagcagatcatctgcttcaggagtccaggcaactccagagtcacccgg
atacgattcaaccaccaggggaacaagtttggtatcgtggatgctgatggaggtttgagt
ctctggcagaccaacaccagtgggactgctcccaaaccatacctgacgctgcattgccac
aacaagacagcaaacgactttgtcttcgtgggctcctcctccctcattgccactgcagga
ctctcaacagacaacaggaacgtgtgtctgtgggacactctggtgactcctgccaacagc
ctggtgcatgcgttctgctgccacgagtccggggccacggtgctcctgatggcctgcaga
cagcagctgctcatcacgggagggaggaagggctggatcagcgtcctggagctcgccccc
cgccaccagcgccagagcttcctggctcacgactcccccgtcaaagctctggctgtcgac
cccaccgaggactgcttcatcagcgggtcagctgagggcaacatcaagatctggagcctg
gccacacagtgtccgctctacaactttcccaacgaacacgctcgccagtcactcttcagg
aacctgggcaccggcgtcatgcagatcgaggtgggaccggccaatcacatcttctcctgc
ggcgctgatgggaccatgaagatgagggtcctccccaaccgcttcagcgtcgccaataac
aacaacaaccacaacagtgacgtcaagttcataatatag
DBGET
integrated database retrieval system
