Pseudochaenichthys georgianus (South Georgia icefish): 117452014
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Entry
117452014 CDS
T09629
Symbol
cltcl1
Name
(RefSeq) clathrin heavy chain 1 isoform X1
KO
K04646
clathrin heavy chain
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Pathway
pgeo04142
Lysosome
pgeo04144
Endocytosis
pgeo05100
Bacterial invasion of epithelial cells
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
117452014 (cltcl1)
04142 Lysosome
117452014 (cltcl1)
09160 Human Diseases
09171 Infectious disease: bacterial
05100 Bacterial invasion of epithelial cells
117452014 (cltcl1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pgeo04131
]
117452014 (cltcl1)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pgeo04147
]
117452014 (cltcl1)
Membrane trafficking [BR:
pgeo04131
]
Endocytosis
Clathrin-mediated endocytosis
Clathrin
117452014 (cltcl1)
Exosome [BR:
pgeo04147
]
Exosomal proteins
Proteins found in most exosomes
117452014 (cltcl1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Clathrin
Clathrin_propel
Clathrin_H_link
Clathrin-link
TPR_PEP5_VPS11
TPR_COPA_B
TPR_Vps41
LVIVD
capSnatchArena
Gp18_dom_I
Motif
Other DBs
NCBI-GeneID:
117452014
NCBI-ProteinID:
XP_033946311
LinkDB
All DBs
Position
9:complement(21549721..21577006)
Genome browser
AA seq
1684 aa
AA seq
DB search
MAQILPIRFQEHLQLQNMGVNPANIGFSYLTMESDKFICIREKVGDQNQVVIVDMSDPTN
PIRRPISADSAIMNPASKVIALKAAKTLQIFNIEMKSKVKAHTMTEEVMFWKWISVNTVA
LVTDTAVYHWSMEGDSQPTKVFDRHASLAGCQIINYRTDEQQKWLLLIGISAQQNRVVGA
MQLYSVDRKVSQPIEGHAAAFGEFKVEGNAKASTLFCFAVRSQAGGKLHIIEVGQPAAGN
QPFAKKAVDVFFPPEAQTDFPVAMQIGNKHGVIYLITKYGYIHLYDLESGVCIYMNRISA
ETIFVTAPHEATSGIIGVNKKGQVLSVCVEEENIVNYATNVLQNPDLALRIAVRSNLAGA
EEIFDRKFNTLFAQGSYSESAKVAASAPKGILRTAETIRKFQSVPAQPGQASPLLQYFGI
LLDQGQLNKFESLELCRPVLQQGRKQLLEKWLKEDKLECSEELGDLVKASDATLALSVYL
RANVPNKVIQCFAETGQFQKIVLYAKKVAYTPDWVFLLRNVMRVNPDQGLQFAQMLVQDE
EPLANINQIVDVFMEGNLIQQCTSFLLDALKNNRPAEGHLQTRLLEMNLIHAPQVADAIL
GNQMFTHYDRAHVAQLCEKAGLLQRALEHFTDLYDIKRAVVHTHLLNPEWLVNFFGSLSV
EDSLECLRAMLSANIRQNLQLSVQVASKYHEQLGTQSLVELFESFKSYEGLFYFLGSIVN
FSQEPDVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDR
FDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRLPVVIGGLLDVDCAEDVIKNLIMVVRGQF
STDELVEEVEKRNRLKLLLPWLESRIHDGCEEPATHNALAKIYIDSNNTPERFLKENTFY
DSAVVGKYCEKRDPHLACVAYERGECDLDLIKVCNENSLFKSEARYLVRRKDPELWANVL
EEDNPFRRQLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSE
HRNLQNLLILTAIKADRTRVMEYINKLDNYDAPDIANIAISNELFEEAFAIFKKFDVNTS
AIQVLIEHIGNLDRAYEFAERCNEPAVWSQLARAQLQRDLVKEAIDSYIKAVDPSAYMEV
VNAASKNNNWEDLVKFLQMARKKARESYVETELIFALAKTNRLAELEEFVSGPNNAHIQQ
VGDRCYDEGMYDAAKLLYNNVSNFARLASTLVHLGEYQAAVDSGRKANSTRTWKEVCFAC
VDGEEFRLAQICGLHIVIHADELEDLISYYQDRAYFEELIALLEAALGLERAHMGMFTEL
AILYSKFKPEKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEFDNSAITMMS
HATDAWKEGPFKDIIAKVANVELYYKSLSFYLEYKPLLINDLLTILSPRLDHSRAVTFFT
KMNQLKLVKPYLRSVQSHNNKSVNEALNNLLTDEEDFQGLRASIDAYDHFDTIDLAQRLE
KHDLIEFRRIAAYLYKGNNRWRQSVELCKQDKLYKDAMLYAAESKDAELAETLLQWFLEE
DRKECFAACLFASYDLLHPDVVLELAWRNNIMDFAMPYFIQVMREYMTKVDEFAAKVTVD
ELEEADSQRKTEEEVTEPQPIVFGQQLMLPASPAPVAAQPPYPGYGYPAAPAGFPAQPAY
GYTM
NT seq
5055 nt
NT seq
+upstream
nt +downstream
nt
atggctcaaatactgccgatacgatttcaggaacatctgcagctgcagaacatgggtgtg
aacccggccaacattgggttcagctatctgaccatggagtcagacaagttcatctgcatc
agagagaaggtgggcgatcagaaccaggtggtgatcgtggacatgtccgaccccaccaac
cccatcaggagacccatctctgctgacagcgccatcatgaaccccgccagcaaggtcatc
gccttgaaagctgccaagacgctgcagatcttcaacatcgagatgaagagtaaggtgaag
gctcacaccatgacagaggaggtcatgttctggaagtggatatcggtaaacaccgttgca
ttggtcacagatacggccgtctatcactggagcatggagggggattcccagcccaccaaa
gtattcgatcggcacgccagtctggccggatgtcagatcattaactacagaactgacgaa
caacagaaatggctactgctgatcgggatttctgcacagcaaaaccgtgtggtaggggcg
atgcagctgtactctgttgacaggaaagtgtcccagcccatcgagggccacgctgcggcc
ttcggggagttcaaggtggagggaaatgccaaagcatccaccctcttctgctttgctgtg
cgctcacaggctgggggaaagttgcacatcattgaagttggtcagccagctgcaggaaac
cagccatttgcaaagaaagcagtggacgtgttcttccctccagaggcccagacagacttt
cctgttgctatgcagattggcaacaagcatggtgtaatatatttgatcacaaagtatggt
tacattcacctgtatgacctggagtctggagtctgcatctacatgaaccgaatcagtgca
gagaccatctttgttaccgcccctcatgaagccacctcaggaattattggggtcaacaag
aagggacaggtgttgtcagtgtgtgttgaggaggaaaacattgtcaactatgccaccaac
gtcctgcagaatcctgatctagccttgagaattgctgtgaggtcaaacctcgctggggcc
gaggagatttttgacaggaagttcaacactctgtttgcacagggaagttattcagagtcc
gcaaaggttgctgcatcagcacccaagggtatcctgaggacagcagagaccatccgtaag
tttcagagtgtccctgcccagcccgggcaggcgtctccactgctgcagtactttggtatt
ctgctggaccaaggccagctcaacaagtttgagtctctagagctgtgcaggcccgtcctg
cagcagggccgcaaacagctgctggagaaatggctaaaggaggacaagcttgagtgctca
gaggagctgggagacctggtgaaggcctccgacgccaccctcgctctcagtgtgtacctc
agagccaacgtccccaacaaggtcatccagtgctttgctgagacgggacagttccagaag
atagtgttgtacgctaaaaaggtggcctacaccccagactgggtgtttttgctgagaaat
gtgatgcgtgtcaacccagaccagggactgcagttcgcccagatgctggtgcaggacgag
gagccgctggccaacatcaaccagattgtagatgtgttcatggagggaaacctgatccag
cagtgcacctccttcctgttggatgcactaaagaacaaccgcccggccgaaggacactta
cagacacgcctgcttgagatgaacctcatacatgctccccaggtagcagatgcgatcctg
gggaaccagatgtttacccactatgaccgtgcccacgttgctcagctgtgtgagaaggca
ggactgctgcagagggctcttgaacacttcacagacctgtatgatatcaaacgggccgtg
gtgcacacacatctgctcaaccctgagtggctggtaaacttctttggatctttatcagtg
gaagactcgctggagtgtttaagggccatgttgtcggctaacatcaggcagaacctgcag
ctgagtgtccaggtagcgtctaagtatcatgagcagctcgggacccagtccttagtggag
ctctttgaatccttcaagagttatgagggcttgttttacttccttgggtcgattgtgaat
ttcagccaggagcctgatgttcatttcaagtacatccaggctgcctgcaaaacaggccag
atcaaagaagtggagagaatctgtagagagagcaactgctacgacccggagagggttaaa
aacttcctcaaggaggccaagctgacagaccagcttcctctcatcattgtgtgtgatcgc
tttgacttcgtccatgacctggtgctctacctctaccgcaacaatctgcagaaatacatt
gaaatctacgtacagaaagtgaaccccagtcgtttaccggtagtgataggtggcctgttg
gatgtggactgtgccgaggacgtcattaagaacctgatcatggtggtcagagggcaattt
tccactgatgagctggtggaggaagtagagaagaggaaccggttaaaacttctattgcca
tggctggagtcccgtattcatgatggatgcgaggagccggctacccacaatgccctggct
aagatctacatcgacagcaacaacacacccgagcgcttcctgaaggagaacacgttctac
gacagcgccgtggtcgggaaatactgcgagaagagagacccccacctggcctgtgtggcg
tatgagagaggagagtgtgacctggatctcatcaaagtgtgcaacgagaactccttattc
aagagtgaggctcgatatctggtgcgaaggaaagatcccgagctatgggcgaatgttttg
gaggaagacaaccccttcagaagacagctaatcgaccaggtggtgcagacagcgctgtcg
gagacccaggacccagaggaggtctcggtcacagttaaggccttcatgacggcagacctg
ccgaacgagctgattgaacttctggagaagattgttctcgataactctgtcttcagtgag
cacagaaatctccagaacctgctcattttgacggccatcaaagccgatcgcactcgtgtg
atggagtacatcaacaagctagacaactacgacgctccagacattgctaatattgccatt
agcaatgagctctttgaagaagcgtttgccattttcaagaaatttgatgttaacacatca
gccatacaggtattgatagagcacatagggaacttggatcgtgcctatgagtttgctgag
cgctgtaatgagcccgcggtgtggagccagttagccagagctcagctgcagagggatctg
gtgaaggaggccatcgactcgtatatcaaagccgttgacccttcagcttacatggaggtg
gtcaacgcagccagcaagaacaataactgggaagacttggtcaaattcctccagatggct
cgaaagaaagcgagagagtcgtatgtagagacagagctgatctttgctttagctaaaaca
aaccgtctggcagagctggaggagtttgtcagtgggcccaacaatgctcacatacagcag
gtgggtgatagatgttatgatgagggcatgtacgacgcagccaagctcctgtacaacaat
gtttccaacttcgctcgcctcgcttcgacgctcgtccacctcggggagtaccaggcggct
gtggacagcggcaggaaggccaacagcacacggacatggaaggaggtgtgtttcgcgtgt
gtggatggcgaggagttccggttggcacaaatttgcggcctccacattgtgatccacgct
gacgagctggaggacctgatcagctactatcaggaccgcgcatacttcgaggagctcatc
gctctgctggaggctgcgctgggcctggagcgtgcccacatgggcatgttcacagagctc
gccatcctctactcaaagttcaaacctgagaagatgagggagcacctcgagctcttctgg
tccagagtcaacatcccaaaggtccttcgtgcagcagagcaggctcatctatgggcagag
ctggtgttcctttacgataaatatgaggagtttgataattccgcaatcacaatgatgtct
catgccacagatgcgtggaaagaagggccgttcaaggacattattgctaaggttgccaat
gttgagctgtactataaatctctttccttttacctggaatataaacccctcctaattaat
gacctgctgaccatcctgtctccgcggctggaccacagccgagctgtcacctttttcacc
aagatgaaccagctgaagttggtcaagccttacctgaggtctgtccagagtcacaacaac
aagtccgtcaacgaagccctcaacaacctgctgacagacgaggaagacttccagggcctg
agagcatccattgatgcctatgatcactttgacaccattgacctggcgcagaggttagag
aaacatgatctgattgagttcaggcgcatcgcagcgtacctatacaaaggcaacaaccgc
tggagacagagtgtggagctctgcaagcaggacaaactctacaaggatgccatgctgtac
gccgcagagtctaaggacgcagagctggcagagaccctgctccagtggttcctggaggag
gacaggaaggagtgcttcgcagcctgcctgttcgcctcctacgacctgctgcacccggac
gtggtgctggagctggcctggaggaacaacatcatggactttgccatgccgtacttcatc
caagtcatgagagagtacatgacaaaggttgatgagtttgcagcgaaggtgacggtggac
gaactggaggaggcagacagccaaaggaaaactgaagaggaggtgacagagcctcagccc
atagtgttcggccagcagctgatgttgcctgcctctcctgctccggtggctgcccagcca
ccgtacccaggctacggttacccagctgccccggcgggcttccctgctcagcctgcctac
ggctacaccatgtag
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integrated database retrieval system
