Pseudochaenichthys georgianus (South Georgia icefish): 117452139
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Entry
117452139 CDS
T09629
Symbol
usp39
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase 39
KO
K12847
U4/U6.U5 tri-snRNP-associated protein 2
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Pathway
pgeo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117452139 (usp39)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pgeo03041
]
117452139 (usp39)
Spliceosome [BR:
pgeo03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP specific factors
117452139 (usp39)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
UCH
zf-UBP
UCH_1
zf-UBP_var
Motif
Other DBs
NCBI-GeneID:
117452139
NCBI-ProteinID:
XP_033946509
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All DBs
Position
9:complement(38643136..38654007)
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AA seq
503 aa
AA seq
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MMVSMKREREAEVDDDDEDDEDIVAAKVGRGRAAEDRRSRHCPYLDTINRSVLDFDFEKL
CSISLSHINVYACLICGKYFQGRGLKSHAYTHSVQFTHHVFLNLHTLKFYCLPDNYEIID
SSLEDITYVLKPTFAKQHIGGLDKQGKLYRAYDGTTYLPGIVGLNNIKANDYANVVLQAF
SNVPPLRNYFLEEENYMGIRRPPGDIMFLLVQRFGELMRKLWNPRNFKAHVSPHEMLQAV
VLCSKKNFQITKQGDAVDFMTWFLNALHGALGGTKKKTSSITKAFQGSMRIFSKKLPHPD
CTPEEKEALLVTEEYQEQMSESTFLFLTLDLPTAPLYKDEKEQLIIPQVPLFNILGKFNG
ITEKEYKTYKENFLKRFQLTKLPPYLVFCIKRFTKNNFFVEKNPTIVNFPITNVDLREYL
TEEAQVTEKNTTYDLVANVVHDGKPTEGAYRIHVLHHGTGKWYEMQDLQVTDILPQMITL
SEAYIQIWKRQESDTDTNNHTAV
NT seq
1512 nt
NT seq
+upstream
nt +downstream
nt
atgatggtttctatgaagcgagaaagagaggctgaagtggacgatgatgatgaggacgac
gaagacatagtggcagccaaagtaggccgaggacgtgcggcagaagaccggagaagccgc
cactgtccttacctcgacactataaacaggagtgtgctggactttgactttgagaaactg
tgctccatatcactctcccacatcaatgtctacgcctgccttatatgtgggaaatacttt
caaggtagaggtttgaagtctcatgcttacacgcacagtgtgcagtttacccatcatgtg
ttcctgaatctgcacactctcaagttttactgtctgccagacaactacgagatcattgac
tcctcactagaagacatcacgtatgtgctgaaaccaactttcgccaagcagcacattgga
gggctggacaagcagggtaaactgtaccgagcctacgatggtacgacctacctgcctggc
atcgtagggctcaacaacattaaagccaacgactacgccaatgtggttttacaggctttt
tccaatgttccaccgttgcgaaactacttccttgaggaggaaaactacatggggatccgg
agaccaccgggggacatcatgttcctcttggtgcagaggttcggtgagctgatgcgcaaa
ctttggaatccgagaaacttcaaggctcatgtctctccacatgagatgctgcaagctgtt
gtgctgtgcagcaagaagaactttcaaatcaccaaacaaggagatgctgtggacttcatg
acgtggttcttgaatgctctgcatggtgctctgggaggcacaaagaaaaaaacatcaagc
atcacaaaagcgtttcaaggctccatgcggatcttttcaaagaaacttccacacccagat
tgtacaccagaagagaaagaggcgttgcttgtgacggaggagtaccaggagcagatgtca
gagtccaccttcctgtttctgacccttgaccttccaacagctccactgtacaaggatgag
aaggagcagctcattatcccacaggttcccctcttcaacatcctggggaagttcaatggc
atcacggagaaggagtacaaaacctacaaagagaatttcctcaaaaggttccagttgacc
aaactgcctccgtacctcgtcttttgcatcaaaagattcaccaagaacaacttcttcgtg
gagaagaaccccacaatcgtcaacttccccatcacgaatgtagaccttcgtgagtacttg
acagaagaagctcaagtgacagagaaaaacacaacatatgacctcgtcgccaacgtggtg
catgatgggaaaccaaccgagggagcatacagaatacatgttctgcatcatggaactggg
aagtggtatgagatgcaggacctgcaggtgaccgacattctcccccagatgatcacactg
tccgaggcctacatccagatctggaagagacaggagagtgacacggacacaaacaaccac
acggcggtgtaa
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