Pseudochaenichthys georgianus (South Georgia icefish): 117452270
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Entry
117452270 CDS
T09629
Symbol
vps13a
Name
(RefSeq) intermembrane lipid transfer protein VPS13A
KO
K19525
vacuolar protein sorting-associated protein 13A/C
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pgeo04131
]
117452270 (vps13a)
Membrane trafficking [BR:
pgeo04131
]
Endosome - Golgi transport
Rab GTPases and associated proteins
Rab associated proteins
117452270 (vps13a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VPS13_N
VPS13_M
VPS13_VAB
VPS13_C
RRM_fung
Motif
Other DBs
NCBI-GeneID:
117452270
NCBI-ProteinID:
XP_033946667
LinkDB
All DBs
Position
9:complement(29673268..29716936)
Genome browser
AA seq
3248 aa
AA seq
DB search
MVFESLVVDVLNRFLGDYVVNLDCSQLKLAIWGGDAVLRNLEIKENALSQLDIPFKVRAG
HIGRLELKIPWKNLYTQSVEATLDGVYLLIVPTASIKYDADKEEKQLQEARQRELQRIEE
TKQKAAEQENPDVEKQDTFVEKLVTQVIKNLQVKISNIHVRYEDDVTNPNCPLSFGVSLK
NLSLQTCDEKWNPRLLDENSRLFFKLVQLDNLFAYWNVDSLLFSNHNAEEALQCLQSSID
AQNSLSISHDFIFRPISAAAKLRMNPRSDVDFSSPKVDLMVHLSEVAIELNRPQYISILG
LLGSVDLMSRNLPYRKYRPEVQVHRNACIWWKYMITSVLEVDVKPRLQMWSWQHIRIHRQ
TIKCYRELYKTKITCKKPSEDLLKALEGPEKALDIFNITLARQQAEVEASKAGLRIFRPG
LKMEEEESQGWLSWMWNLGGEAESETKEVKTGGFDELLTYAEKSKLYTAIGYSDTAANPN
LPKNFEDMKVDFHMERLSVSITDNKDKDEIIRLTVGELKSTLTQRPGAQAIKITAQLSLF
EVTGLASNRPAPTLLSSRKAATGDGTPLLCILFETNPLDESANQRLHVESQPLEIIYDAI
TVNSMSAFFLPPDDLQLDELTNATLMKLEQFRDRTSTGLMYVIETQKVLDLKVNLMASYV
IIPQTGFYNGTQNILLLDLGHFQMSSQSKKNLPQLSVGTSNIEDIMSRAYDSFDIQLSSL
QFLYSKPDWDWKMARKQKQSPLHILEPVDLTVVFSRAMVVTDSRMAKFKMSGELHLLSLR
ISDVKLRNVLELVDSIPLPESIPAANGSASSSKPKLSFTPQLTPRRPLNLADQRSSLMFE
SCETISITSLGSEEDLFYDAPSSPVGDRPFFPDNPMPLHYAKFNRSKSSEAQKNMTDLIL
NFEISQFSVQLCRLSGDQEVAVLHLDIEGLGTELKLRTFDMTSNTYLREICLKCPEYMDS
EEQQVQLITTLDNSEVDLLTLEYIKADRNGPEFKSQHNNTEQLIKVTFSSLDVHLHTEAL
LNTMNFLTNLLPPSTKKEAVQEELPIIPEEEEAEKEGEKKEETTVAKKKSTKPSKFADVV
NWHIRADLRCLKVFIRGQKARISEISIEGLVSEVLMRKKGMEVLANLKNIVILDCDKDAL
YKKAVSIADKEVFAFRMVNYTDATEGDAYLDMSNVDTAVTLTVGCIQVIFLNKFVSSILG
FINNFQEAKEALTEVTVQAAEKAASGVKELAERSTRINLNVHFNAPVIFLPQSSSSSNVI
VADLGLLSVKNHFAKQPSKSDATIPPVVDIMTVRLTDLKMYRTTYKDESFQGETQLLMPV
SLDLEVQRNLSSNWYHSIPDIEITAHLKPMSLILSQDDMTVVLKTLSENLTEKSDAVPPP
ALPSPSTDLSSDTVSNKESMGSGTTGPASSNTVVTAAVVEPRKNSKLKSTLKLDFKFDSM
TLVLYSPNGNTLLTLDSHDEQLKLAEFTLGTISTSVHMFSDSSMKASVRLAACLLDDKRT
RIKMVTPRMIAMRPGAEQNMMVEVNYRQGREGTTLDTLVQDVYLCASMEFLHIVADIFLN
ATQQGFAQAPQPKTSTGPGERKNINSSTTSKESTVAPAVVSKTEINVMVRNPEIVFVADL
TRADAPALVMTTQCELVMKSSAEGSQMTAVIKELKVVACPFLREKRKNNVTTVLQPCQVF
FQSSQSLTSPQAMEVSINALTLKVSPIIINTVMTIQSALTPTAETPEELASPVPVDLWEK
RGWKELKLWFLEEEGDEDTKSLAPLIPTGESLQVTIKSICLTLEAGVGHRTIPMLLIKSS
FHGDVTNWSTLINLHSMLNLEVHYYNEVLGVWEPLLEPLEDEKDGFRSWTLELKMKKKPV
NYIGSDEVDFYVPDYKTVIVISSKDQLNITLSKCGLAMLSNLGMAFAEAAKQTADSFQKD
EAPFIVKNRLGLPVSVRHSEMFCPIGQQGTNRTVELEDGQTLGLDYFTTTDADQFSAMIS
LSGKEYYIQPTPMGHTSASVIPLIKVGRGMYSVMHTDSGVTRFLVCQIYTVEGSKYVKIR
SPFQIINHFSISFNVFEGSTCLGKALPTEEFCVPLDSYRSELSLRPITEEDTDDQEEQYE
CSEGFSYEDFHAHQPDTRLQQTCRRRGDQGGVLMVNMVPSRDAVTFKHTGGVGENFDVPF
VLHLWPSILLRNLLPYPISYKLKDSGVSAPEATLNQGHSAQLHTAVINQSSLDLCLLNYL
DQDWSSEYSLHSDQEEITFIVFQSLREYDEEDGEDTERKRPELDIAVHVEYNQGQTVVAI
HSPYWMVNKTGRLLQYKADDIHRKHPLDYDMPLLFSFKPRYFLKNNKVRLMISDSDLSDD
FSLDTVGSYGDVKCKGRYKDYLVGVKIDASSFSLTRIVTFVPFYMLVNRTKHSVFICEER
QGNWTEAKPLQSAIPFWPENDTKRLKIKVEGCLLPPRTIDFTRPENCLLLHLDNSVGGIT
VNVNLSEHSATIRFSEYHDGAAPFLIINNTKDQTLQFYQSSQKEAEHEGLEAGRAVHYTW
TEPTGSRELCWKCGTYSGKLKSEEDLLVDMNNEGKLFVVSFYEGLQRVVLFTEELRIYKL
LCESEKAQMAEQEIILSLQNVGVSLVNNSSGQEISFIGITSSDVVWELKPKKKNRWKSMS
AKEAEMLESRFKEYTESGPVDLAIADLDNNFQVSFTPNGQDMQMFQPCDAPLRRHFLPAV
KVEYSVSPRQSAYRVQIHRIQIQNQLPGAIFPYVFYPVKLPKSITMDAEPKPLTDISIVT
RTAGHSDISRIKYFKVLIQEMDLKLDLGFLYAILDLFTPENASIMSSQQEVELFEKDIEY
IKTELNHVSAADTSPISLYEYFHISPIKLHLSLSLSTGGEDGMKEKRDKELIPVQSLNLL
LKSIGATLTDVQDVVFKLAFFELTFRFCTTQQLQWEVIRHYSKQAIKQMYVLVLGLDVLG
NPFGLIRGLSEGVEAFFYEPYQGAIQGPEEFVEGMALGVKALVGGAVGGIAGAASRITGA
MAKGVAAITMDEEYQQKRREAMNKQPSGLREGLARGGKGLVSGFVSGITGIVTKPIKGAQ
KEGAAGFFKGVGKGLVGAVARPTGGIIDMASSTFQGIKRAAETSQDIASLRPPRFIHEDG
VIRPYKEREGLGSQMLQKIENGRFAKYRYFAHAKVNDSDFFMITKRGIFFVTKGTFGQLT
CEWQYLFEEFTKDPMIVEDRRLRIEAKERVKSVFHAKEFGKIINFKTPEIATWVLARLDD
ARESLHKY
NT seq
9747 nt
NT seq
+upstream
nt +downstream
nt
atggtcttcgaaagcttggtggttgatgtcctcaaccgatttttaggggactacgttgtc
aaccttgactgctcacagctaaagcttgccatatggggaggtgatgctgttcttagaaat
cttgaaataaaggaaaatgccttgagtcaacttgacattccttttaaagtgagagccggt
catataggacggcttgagctaaagatcccatggaagaacctgtacacacagtctgtagag
gcaacactggatggggtctatctactcatagtccccacagcaagcataaagtatgatgca
gacaaggaggagaagcagctacaggaggctcgtcagagggagctacagcggatagaggag
acaaagcagaaagctgctgagcaagagaatccagatgttgaaaaacaggacacctttgtg
gagaagctggtcactcaggtcatcaaaaacctgcaagttaagatctctaacatccatgtg
cgctatgaagatgatgtcaccaatccaaactgccccttgtcatttggagtgtcacttaaa
aacctcagtcttcagacatgtgatgagaaatggaatcccagacttttggatgagaattcc
cgacttttcttcaagttggttcaactagacaacttgtttgcctactggaatgtcgactct
ttactcttctccaatcacaatgcagaggaagccttgcaatgtctgcagagcagcatcgac
gcacagaactctctttcaatcagccatgacttcatttttcgtcctatctcagcggccgct
aaactgcggatgaatcccaggtcagatgtggacttttcctctcctaaagtggacctgatg
gtccatctcagtgaggtggccattgaactcaacagaccccagtacattagcatcctgggg
ctgctgggctcagtggatttgatgtctcgcaatctcccgtacaggaagtacagacccgag
gtccaggttcacagaaatgcctgcatatggtggaagtacatgatcacaagcgtcctggag
gtggatgtaaaacctcgtctccagatgtggtcctggcagcacattcgcattcaccggcag
acgatcaagtgttacagagagctgtacaagaccaaaatcacctgcaagaaacccagcgag
gacctgctcaaggcactcgaggggcctgagaaggccttggatatttttaacatcacgttg
gccagacagcaggcggaggtggaggcaagcaaagcaggtctacgaatcttccgtccaggg
cttaagatggaggaggaggagtctcagggctggttgagctggatgtggaatttgggagga
gaggccgaatcagaaacaaaagaggtcaagactggaggttttgatgagctgttaacctac
gctgagaaatccaaactctacactgccatcggatacagtgacaccgctgcaaatcccaac
ctgccaaagaattttgaggacatgaaggtcgatttccacatggagaggctgtctgtgtcc
atcactgacaacaaggacaaagatgagatcatcaggctgactgtgggagagctcaagtcc
acactcactcagagacctggagcgcaagccatcaaaatcacagcccagctcagtttgttt
gaagtcaccggcctggccagtaaccggcctgcaccgaccctcctgtcgtccaggaaggcc
gccacaggagacgggaccccgctgctctgcatcctgtttgagaccaacccgctggatgag
agcgccaaccagcggcttcatgtggaatcacaacccttggaaataatctatgacgctata
acggtaaacagcatgtcagcgttcttcttgccccctgatgacctgcagctggatgagctc
accaacgcaaccctcatgaaactggagcagtttagagaccgcacatccaccggtctgatg
tatgtgatcgaaacacagaaagttttggacctgaaggtgaacctgatggcctcctatgtc
atcattccacagaccggcttttacaacggcactcaaaacatcctacttttggatcttgga
catttccagatgtccagtcaaagcaagaagaatctgcctcagctgtcagtgggcaccagc
aacattgaagacattatgtccagagcatacgacagctttgacatacagcttagcagcctg
cagttcctttatagcaaaccagattgggactggaaaatggctcgtaagcagaaacagtca
ccgctgcacattctggagccggtggatctgacggtggttttcagcagggcgatggtcgtc
acagactcccgcatggcaaagtttaagatgtcgggcgagctccacctgctgtctcttcgt
atctctgatgttaaacttcgaaatgttctggagctagttgacagtatcccgctgcctgag
agcatacctgcggcaaacggctctgcttcatcctccaagccgaagctgtcgttcacccca
caactcactcccagaagacctctgaacttagccgaccagcgctcctctctcatgttcgag
tcatgtgaaaccatcagcatcacctcgttgggttcagaggaagatttgttttacgatgct
cccagctctcccgttggtgatcgaccattcttcccagataatccgatgccgctgcactac
gcaaagtttaacagaagtaaaagttcagaagctcagaagaacatgactgacctcatcttg
aactttgaaatcagtcagttttctgttcagttgtgtcgtctttctggagatcaggaggtc
gcggtgcttcacttggacatagagggtctgggcactgaactgaaactacgcacctttgac
atgacctctaacacctacctacgggaaatctgcctcaagtgccctgaatacatggattct
gaagagcagcaggttcagctgatcaccactctggacaactcagaggttgacctgctcacc
ctggagtacattaaagctgataggaatggccctgagttcaagtctcagcacaacaataca
gagcagctcatcaaggtgaccttctcatccctggatgttcatctacatacagaggctcta
ctcaacaccatgaacttcctcaccaacctccttcctccatccaccaagaaagaggcagtg
caggaggagctccccatcattcctgaggaagaagaggcagagaaggagggagagaagaag
gaggaaactactgtagccaagaaaaaaagtacaaagccttcaaagtttgcagatgtggtg
aactggcatatcagagctgatctccgctgtctgaaggttttcattcggggacagaaagcc
aggatttctgagattagtattgaaggtctggtttctgaggttctgatgaggaagaagggg
atggaggttctggccaacctgaaaaacattgtgatcctagactgtgacaaagatgctctt
tacaagaaggctgtgtctatagcagataaggaagtgtttgccttccgcatggtaaactat
acggacgcaacagaaggagacgcctatctggacatgtctaatgttgacactgctgtcacg
ctgactgtgggatgcattcaggtcatcttcctcaacaagtttgtctcctccatactggga
ttcatcaataacttccaggaggctaaagaggcgctgactgaggtgacagtccaggctgca
gagaaagcagcgtctggtgtgaaggagctggccgagcgcagcactcgtatcaatctgaac
gtccacttcaacgctcccgtcatcttcctgcctcagtcctcctcttcctccaatgtcatt
gtagctgaccttggtctgctgtccgtcaagaaccactttgccaagcagccctctaagagt
gatgccacgatcccgcctgttgtggatataatgaccgtgaggctgactgacctcaagatg
tacaggaccacatataaagatgaaagttttcagggagagacccagctgttaatgccagtc
agcttggacttggaagtgcaaagaaatctttcatccaactggtaccacagcataccggac
atagagatcaccgctcatctgaaacccatgagtctgatcctcagccaggatgacatgacg
gtggtcctgaagactctgagtgaaaacctgaccgagaagtctgatgctgttccacctcca
gctcttccttctccctccactgatctatcctctgacaccgtatccaacaaagagtccatg
ggctctggaaccaccggaccagccagcagcaacacagtggtgacggctgctgttgtggag
cccagaaaaaacagcaagctgaagagcacactgaaactagacttcaagttcgactcaatg
acacttgtcttgtatagccctaatgggaatacgttactaacgctagattcacatgatgag
cagctgaagttggcagagtttactctgggcaccatctccacctccgtccacatgttctcc
gacagctccatgaaggcctcagtacgactggctgcctgccttctagatgacaagagaacc
agaatcaaaatggtcaccccgaggatgattgcaatgcgtcctggtgcagaacagaacatg
atggtggaggtgaactatcgtcagggccgtgaaggcaccactctggacacgctggtgcag
gacgtgtacctgtgtgccagcatggagttccttcacatcgtggcagacatctttctcaat
gccacccagcaagggtttgctcaggcgccacaacccaagaccagtactggaccgggagag
agaaagaatataaactcctctacaacatctaaagagtccactgtcgctccagctgtggtt
tcaaagacagagataaatgttatggtgcgcaacccggagattgtgtttgtggctgacctg
acgcgcgccgacgctccggctctggtgatgaccacgcagtgcgaactagtgatgaagagt
agtgcagagggatcacagatgactgctgttatcaaggaactcaaggtggtggcgtgtcca
ttcttgagagagaagaggaaaaacaacgtaaccacagtgctgcagccgtgtcaggttttc
ttccagagttctcaatccctaacctcccctcaggctatggaggtctccatcaatgctcta
acattaaaggtatctccgatcatcatcaacacagtgatgaccatccagtctgcgctgact
cccacagcggagacccccgaggagctggccagtccggtccctgtggacctgtgggagaaa
cggggctggaaggagcttaaactgtggttcctagaagaagagggggatgaagacacaaag
tcactggccccactgataccaactggagagtcattacaggtgaccatcaaatcgatctgt
ctgactctggaggctggagtgggacaccgcacgatccccatgctcctgatcaagtcctcc
ttccatggagacgtcacaaactggtccacacttattaacttacacagcatgctcaacctg
gaggttcactattacaacgaggtgctgggagtatgggaaccgctgctggagcccttagaa
gatgagaaggatggttttagatcatggactcttgaactgaagatgaagaagaagccagtg
aactacataggttcagatgaggtggatttttatgtcccagactataagactgtcattgtc
atcagcagtaaagaccagctcaacatcaccctctccaaatgtgggctggccatgttgagt
aacttgggcatggcatttgcagaggctgccaaacagacagctgactccttccagaaggat
gaggctcccttcatagtgaagaaccgcctcggcctgccagtgtccgtccgccacagtgag
atgttttgtcccatcggccagcagggcaccaaccgcacagttgagctggaggatgggcaa
accctcgggttggactatttcaccacaacagacgcagaccaattctcagccatgatttcc
ttgagtggaaaagagtactacatacagcccactccaatgggtcacacctcagccagcgtg
atccccctgatcaaggtgggccgggggatgtacagtgtgatgcacacagactcaggagtc
actcgtttcctggtctgtcagatttacactgtagagggcagcaagtacgtcaagatccgc
tctccattccagatcatcaatcatttctcaatctcattcaacgtttttgagggatcaaca
tgtctgggtaaagctctccctactgaagagttctgtgtgcctttggactcgtataggtct
gagctgagccttcggccaataacagaggaggacactgatgatcaggaggagcagtacgag
tgctcagagggtttcagctacgaagacttccacgctcatcagcccgacacacgcctgcag
cagacctgccgccggcgtggagatcagggtggtgttctgatggtcaacatggtgccatcg
agagacgctgtgacattcaaacacactggaggtgttggggagaacttcgatgttcccttt
gtgcttcatctgtggccttccatcctgctgcgcaacctgctgccttaccccatctcttac
aaactgaaggacagtggtgtctctgcccctgaggccactctgaaccagggccactctgcc
cagcttcacactgcggtcatcaaccaatcaagtctcgatctgtgcctactgaactacttg
gatcaggactggtcttctgagtacagtctccacagtgaccaggaggagattaccttcatc
gtgttccagtctctacgagagtatgacgaagaggatggtgaggatacggagaggaagaga
cctgagttggacatagcagtgcatgttgaatataaccagggacaaacggtggtggctatc
cactctccatattggatggtgaacaagacaggcaggttgctgcagtacaaggccgacgac
atccaccggaaacacccgctggactacgacatgcccctgctcttctccttcaagcctcgc
tacttcctgaaaaacaataaggtccgtctcatgatatcagacagtgacctctccgatgat
ttctccctggatacagttggtagctatggagatgtgaaatgcaaaggccgatacaaagac
tacttggttggtgtgaagattgacgcaagcagtttcagtctgacccgcatcgtgaccttc
gtgccattttacatgctggtcaacagaaccaagcacagcgtgttcatttgtgaagagcgg
cagggcaactggaccgaagctaaacccctacagtcagccattcccttttggcctgagaac
gacaccaagcggctgaagatcaaagtggaaggctgtttgttgcctcctcggacgattgac
ttcacacgaccagaaaactgcctacttctgcatctggacaactctgtgggtgggatcact
gtaaatgtgaacttgtccgagcactcggccacgatccgcttctctgagtatcacgatggc
gcagcccctttcctcatcatcaacaacacaaaggaccagacactgcagttttatcagagc
tctcagaaggaggcagagcacgaggggctggaggctgggagagcggtgcattacacctgg
accgaacccaccgggtcccgagagctctgctggaagtgcggtacttacagtgggaagctg
aagagtgaggaggacctgctggtggacatgaacaatgaggggaaactatttgtggtgtcc
ttctatgaaggtctccagcgagttgtgctcttcactgaggagctacgcatctacaagctg
ctctgtgagagcgaaaaggctcagatggccgaacaggaaatcatcctgtcgctgcagaac
gtgggcgtgtctctggtcaacaacagcagcggccaggagatctccttcattgggatcaca
agctctgatgtggtgtgggagttaaagcctaagaagaagaatcggtggaagtctatgagc
gctaaagaagctgagatgctggagagcagattcaaagagtacacggagtctggccccgta
gacctcgccatcgctgacctggataacaacttccaggtgtcctttactcccaatggccag
gatatgcagatgttccagccgtgtgatgctcctctcaggaggcacttcctgcctgcagtg
aaggtggagtacagcgtctctccacgacaaagtgcctaccgtgtccagatccaccgcatt
cagatccagaaccagctgcccggagccatcttcccgtatgtgttttaccctgtgaaactg
ccaaagtctatcaccatggatgcagaacccaaacctctaactgacatcagcattgttacc
agaacagcagggcactctgatatctcacgcatcaagtacttcaaggtgttgatccaagag
atggacctgaagctcgatctgggcttcctgtacgccatcctggacctgttcactcctgag
aacgccagcatcatgagctcacaacaggaggtggaactgttcgagaaggacatagagtac
ataaagacagaactgaaccatgtctctgctgctgacacctctcccatcagcctctacgag
tacttccacatctcccccatcaagctgcacttgagtttatctctgagtacgggaggggaa
gacggcatgaaggagaagagagacaaggaactcatccctgtccagtccctgaacctgctg
ctgaagagtatcggtgccacgctcacagatgtgcaggacgtcgtcttcaagctggccttc
tttgagttgaccttccggttttgtaccacccagcagctacaatgggaggtcatcaggcat
tattccaagcaggctattaaacagatgtatgtgctggtgctgggcctggatgtacttgga
aatcctttcgggctgatcagaggactgtcggagggcgtggaagccttcttctatgagccg
tatcagggagccatccaggggcctgaggagtttgttgaaggaatggctctgggggtgaag
gctctggtgggaggagctgtagggggaatagcaggtgccgcctccaggatcactggagcc
atggcgaagggtgtcgctgccataacgatggacgaggagtaccagcagaaaagacgagaa
gctatgaacaaacaacccagtggcctgagagaggggctggccaggggaggaaagggatta
gtgtctggttttgtcagtggcatcacgggcattgtcaccaaacctatcaaaggagcacag
aaggagggcgcagccggctttttcaagggtgttgggaaaggtctggttggtgctgtagcc
agacctaccggaggcattattgacatggccagcagtactttccaagggatcaagagggca
gcagagacttcacaagatatcgcctctttgcgaccgccgcgtttcattcacgaggatgga
gtcatacgcccatataaggagagggagggactcggcagccagatgctccagaaaattgag
aatggacgttttgccaagtacagatactttgctcatgccaaggtcaatgattcagacttc
ttcatgatcaccaagaggggaatattttttgtgaccaaaggcacatttggccagctgact
tgtgagtggcagtatctgtttgaagagttcaccaaggatccgatgattgttgaggaccgc
cgacttcgcattgaggccaaggagagagtgaagtctgtcttccacgctaaggagtttggg
aagatcataaacttcaaaactcctgagatcgctacttgggttctggccagattggacgat
gcaagagaaagtttgcataaatactga
DBGET
integrated database retrieval system
