Pseudochaenichthys georgianus (South Georgia icefish): 117452284
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Entry
117452284 CDS
T09629
Symbol
vcp
Name
(RefSeq) transitional endoplasmic reticulum ATPase
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Pathway
pgeo04137
Mitophagy - animal
pgeo04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
117452284 (vcp)
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
117452284 (vcp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pgeo03019
]
117452284 (vcp)
03009 Ribosome biogenesis [BR:
pgeo03009
]
117452284 (vcp)
04131 Membrane trafficking [BR:
pgeo04131
]
117452284 (vcp)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pgeo04147
]
117452284 (vcp)
Messenger RNA biogenesis [BR:
pgeo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
117452284 (vcp)
Ribosome biogenesis [BR:
pgeo03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
117452284 (vcp)
Membrane trafficking [BR:
pgeo04131
]
SNARE
SNARE associated proteins
Others
117452284 (vcp)
Autophagy
Aggrephagy
Other aggrephagy associated proteins
117452284 (vcp)
Exosome [BR:
pgeo04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
117452284 (vcp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
AAA_16
CDC48_2
AAA_5
AAA_33
AAA_2
AAA_22
TIP49
AAA_14
NPHP3_N
RNA_helicase
Vps4_C
AAA_28
Parvo_NS1
nSTAND3
Mg_chelatase
AAA_17
IstB_IS21
ATPase_2
AAA_7
AAA_18
ABC_tran
ATPase
DUF815
AAA_24
NB-ARC
AAA_lid_PRS2_C
ResIII
TsaE
NACHT
Viral_helicase1
SLFN-g3_helicase
KAP_NTPase
DUF3944
Zot
Motif
Other DBs
NCBI-GeneID:
117452284
NCBI-ProteinID:
XP_033946695
LinkDB
All DBs
Position
9:complement(36843214..36852995)
Genome browser
AA seq
806 aa
AA seq
DB search
MSSAADKIQDDLATAILKQKSRPNRLIVDESINEDNSVVSLSQTKMDELQLFRGDTVLMK
GKKRRETVCIVLSDDTCSDEKVRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPID
DTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDT
VIHCEGEPIRREDEEESLNEVGYDDIGGVRKQLAQIKEMVELPLRHPALFKAIGVKPPRG
IMLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAI
IFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRF
GRFDREVDIGIPDATGRLEILQIHTKNMKLSDDVDLEQVANETHGHVGADLAALCSEAAL
QAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFKWALSQSNPSALRETVVEVPNVTWEDIG
GLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFI
SIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNVGDGGGAADRV
INQILTEMDGMSSKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRMNILKAN
LRKSPIAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIENEIRRERERQTNPSAM
EVEEDDPVPEIRKDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGSFRFPTGTAGG
SGPTQGSGGTGTGPVFNEDNDDDLYG
NT seq
2421 nt
NT seq
+upstream
nt +downstream
nt
atgtcctcggcagcggacaagatacaagatgatctggccactgctattctgaaacagaag
agcagacccaacagactgatcgttgatgaatccatcaatgaagacaacagtgtggtctct
ctctctcagaccaagatggacgagctgcagctcttccgtggagacacggtgctgatgaag
ggtaagaagaggcgggagactgtctgcattgtgctgtctgacgacacctgttccgatgaa
aaggttcgcatgaacagggtggtccgcaacaatctgagggtcagactgggtgatgtcatc
agcattcagccatgtcccgatgtgaagtatggaaagaggatccacgttctgccaatagat
gacacagtagaagggattactggcaacctgtttgaggtctacctgaagccatactttctg
gaggcatacaggccaatccgtaaaggtgatattttcctggtcagaggaggcatgcgtgct
gtggagttcaaggtggtagagaccgacccctctccctactgcatcgttgcacctgacacc
gtcatccactgtgagggagagccaatcagaagagaggatgaggaagagtccctgaatgag
gtgggctatgatgacatcggaggagtgaggaagcagttggctcagatcaaagagatggtg
gagctgcctcttagacaccctgctctgttcaaggccatcggagtcaagcccccacgtgga
attatgctttatggaccccctggaactggaaagaccctgattgccagagctgtggccaat
gaaactggagctttcttcttcctgattaatggtcctgagatcatgagtaagctggcagga
gagagcgagagtaacctgaggaaggccttcgaggaagcagagaagaatgctcctgccatc
atctttattgatgagcttgatgcgatcgcccctaagagagagaagactcacggagaagtg
gagaggcgcattgtgtcccagctgctgactctcatggacggcctgaaacaaagggctcat
gtcatcgtcatggcagccaccaacagacccaacagcatcgacccagctctcaggagattc
gggcgtttcgatagggaagtggacattggcatccctgacgccaccggcagattggagatt
ctccagattcacaccaaaaacatgaaactgtctgacgatgttgacttggaacaggttgcc
aatgagacccatggacatgttggtgccgatctggctgctctgtgctctgaggccgccctg
caggccatcaggaagaagatggacctgatcgaccttgaggatgagaccattgatgctgag
gtcatgaactcccttgctgtcactatggacgacttcaagtgggccctgagccagagcaac
ccatcagctctgagggagacggttgtcgaggttcccaacgtcacctgggaagacatcggc
ggtctggaggacgtcaagcgggagctgcaggagttggtgcagtacccagtggagcacccg
gacaagttcctcaagttcggcatgaccccatccaagggcgtgttgttctatggtccccct
ggttgtggtaagactctcctagctaaagccatcgccaacgagtgccaggctaacttcatc
tccatcaaaggacccgagctgctcaccatgtggttcggagagtctgaggccaacgtcaga
gagatcttcgacaaggctcgtcaagcagccccgtgcgttctcttctttgatgagctggac
tccatagccaaggctcgtggaggcaacgtgggagacggaggcggagcagccgaccgtgtc
atcaaccagatcctcaccgagatggacggtatgtccagcaagaagaacgtcttcatcatc
ggagccacaaacagaccagacatcatcgaccccgccatcctgagacccggccgtctggat
cagctaatctacatccccctgcccgacgagaagagccggatgaacatcctgaaggccaac
ctccgcaagagccccatcgccaaggatgtggacctggagttcctggcaaagatgaccaat
ggcttctctggagccgatctgaccgagatctgccagcgggcgtgtaagctggccatcaga
gagagcatcgagaacgagatccgcagagagagggagaggcagaccaacccgtcagccatg
gaggtggaagaggacgatcctgtgcccgaaatcaggaaggaccactttgaggaggcgatg
cgatttgctcgtcgctccgtcagtgacaacgacattcgcaaatatgagatgtttgctcag
acactgcagcagagccgtggcttcggcagcttcaggtttcccaccggcactgcaggcggc
agcgggccaacccaaggctcaggaggaactggtaccggcccagtgttcaatgaagacaac
gacgatgacctttacggataa
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