Pseudochaenichthys georgianus (South Georgia icefish): 117452413
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Entry
117452413 CDS
T09629
Symbol
pdlim5a
Name
(RefSeq) PDZ and LIM domain protein 5a isoform X1
KO
K19867
PDZ and LIM domain protein 5/6/7
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Pathway
pgeo04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
117452413 (pdlim5a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
pgeo04990
]
117452413 (pdlim5a)
Domain-containing proteins not elsewhere classified [BR:
pgeo04990
]
LIM domain-containing proteins
PDZ-LIM family proteins
117452413 (pdlim5a)
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GFIT
Motif
Pfam:
LIM
PDZ
PDZ_6
DUF4749
LIM_FHL2-3_N
Motif
Other DBs
NCBI-GeneID:
117452413
NCBI-ProteinID:
XP_033946915
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Position
9:28363115..28460698
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AA seq
451 aa
AA seq
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MSSNDSVTLLGPAPWGFRLQGGKDFNMPLTISRLTDGGKAAKGGIGIGDMVLSIDGIATE
GMNHLEAQNKIKSCSGNLSLKLQKASSVSKPPPVAPKTAACQQITNGPQSILKKPQPPRV
PRKHIVDTDIHFYHVPTHADASRKRITEDTEDWRPRSGTTQSRSFRILAQITGTERAQDE
EAEAAKTNEEGKEPELSSHESAVIKTMTKGPPAIQGQVPKAGLITPSSGIKGNGGASVPR
SPVPTRPLPQPHPKDEDTLVQMAEHIPAGFRTPMCAHCNMVIRGPFLVALGKSWHKEEFN
CTHCRKSLADIGFVEEQGTVYCEHCYEDFLAPTCSRCQDKILGEVINALKQTWHVHCFLC
ATCQQPIRNNTFHLEEGEPYCEQDFYSMFGTSCHGCEFPVEAGDKFLEALGYTWHDNCFV
CAVCCTTLEGQTFFSKKDKPLCKKHAHTLKI
NT seq
1356 nt
NT seq
+upstream
nt +downstream
nt
atgagcagcaacgacagcgtcactctcttaggccccgccccgtggggcttcaggctccag
ggagggaaggacttcaacatgcccctcaccatctccaggctgacggatggtgggaaggcg
gctaaagggggcattggtattggagacatggttctgtctattgatggcatcgccacggag
ggcatgaaccacctagaggcccagaacaagatcaagagctgcagtggaaacctcagcctc
aaactgcagaaggcctccagtgtttctaaacctcctcctgtggcaccaaagactgcggct
tgtcaacagatcacaaatggacctcaaagtattctaaaaaaaccccagccaccaagagtg
cccaggaaacatatcgtggacacagacatccatttctatcatgtgcccactcatgctgat
gccagcaggaagcgcataacggaggacacagaggactggcgcccacgctccggcaccacc
cagtccaggtctttcaggattctggctcagatcaccggaaccgagcgtgctcaagacgag
gaagctgaggcagccaagacgaatgaggagggaaaggagccagaactcagcagccatgag
tcagcagttatcaaaaccatgacgaaaggaccgcctgcaatccagggtcaagtcccaaag
gctggtttaatcaccccgtcttccggtataaagggtaatggtggtgccagtgtccccagg
agtcctgtcccaacccggcctttacctcagccccatcctaaagatgaggacaccctggtc
cagatggcagaacacatccctgctggttttcgtacgcccatgtgtgcccactgcaatatg
gtcatcagagggccatttttggtagcattgggaaagtcatggcataaggaggaatttaac
tgtacccactgccgtaaatccctggcagatataggctttgtggaagaacagggcactgtc
tactgtgaacattgctatgaagacttcctcgctccaacatgcagccgctgccaggacaag
atacttggggaggtgataaatgccctcaaacagacgtggcatgtccactgctttctgtgc
gctacctgtcagcagccaatcagaaacaacaccttccacctggaggaaggagagccatac
tgtgaacaagatttttacagtatgttcggtaccagctgccatggctgtgagttccccgtt
gaggctggagacaagttcctcgaggcccttggttacacctggcatgataactgcttcgtc
tgcgctgtgtgctgcactactctggaaggccagacctttttctccaagaaggacaaacct
ctttgcaagaaacatgctcacacactgaagatatga
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