Pseudochaenichthys georgianus (South Georgia icefish): 117452545
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Entry
117452545 CDS
T09629
Name
(RefSeq) replication factor C subunit 1-like
KO
K10754
replication factor C subunit 1
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Pathway
pgeo03030
DNA replication
pgeo03410
Base excision repair
pgeo03420
Nucleotide excision repair
pgeo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
117452545
03410 Base excision repair
117452545
03420 Nucleotide excision repair
117452545
03430 Mismatch repair
117452545
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pgeo03032
]
117452545
03400 DNA repair and recombination proteins [BR:
pgeo03400
]
117452545
DNA replication proteins [BR:
pgeo03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
117452545
DNA repair and recombination proteins [BR:
pgeo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
117452545
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
PTCB-BRCT
AAA_22
AAA_30
RuvB_N
AAA_5
AAA_33
BRCT_2
AAA_14
AAA_16
RNA_helicase
AAA_17
nSTAND3
AAA_18
AAA_7
NTPase_1
TIP49
Rad17
AAA_19
NPHP3_N
Motif
Other DBs
NCBI-GeneID:
117452545
NCBI-ProteinID:
XP_033947135
LinkDB
All DBs
Position
1:26258619..26273203
Genome browser
AA seq
1185 aa
AA seq
DB search
MLSNQKLLEPDIRRFFAPTAVQETSLQMGNIKTEEEEKKKKKKKNPLSSDEEVKKKETTK
VKSSKTEEKLKDGDKKRKKQIVIVSDSDDEEPVRKSKKSPKEKQKKSKSETPPKKDPVQY
VSETDSDSDSFQTLKKVSKTKPKQNGTAKQTKSDARPEAKEGLKSPVPPSSTKGKTAVKS
PPTPVTPKSAPPPVPKHTPTSVLDYFGSAAVQRSEKKLVASTKRKAPIQDTDDLSDEQIA
KQLQMHEDMELEKQVHEDEEFARTLAMLDEEPQAKKARKGSDEKPAPTTLPKKSSPDSAA
GSLSSPSKSSRRGSMSEDAISPTPKKNPASVRAGSKLATMKKEQEERDVSSKSKTIISPS
KIKISPKKEPLASPSYEKKFTPKTGTTVKTSPKKPEVSKSTSTSPDDAEKKKNTAAFRNF
LNRDGPRALGSKEIPQGAENCLEGCVFVLTGVMESMERDDAKSLIERYGGKVTGNISKKT
TYMVQGRDSGVSKLEKAESLGTKILDEDGLLELISTKPGKKSKYEIAAEAENKASKTKTP
PGRTSKSTPTSQKISPSKGNSRSPHTPSPSKTGLASGRGAGIQGRDTPPGRGSAHTARRE
LGLSSSSAASPSEKGEDASLLWVDKYRPLSLKAVIGQQGDQSCANKLVRWLQNWYRHHGS
GTSKPPVARFGKFGGGKDDGSGFKAALLSGPPGVGKTTTAALVCEELGLSFVEMNASCTR
SKNSLKEVVSESLNNTSIEGFYKGTSQKVTNKHVLIMDEVDGMAGNEDRGGIQEMISLIK
TSKIPIIFMCNDRNHMKIRSLANHCFDLRFQRPRVDQIKGAMMSLAFKEGIKIPPPALNE
IILASNQDIRQVIHNLSMWSAKDKVMTYDQCKTDAASARKDMKMGPFDVCRKVFVFGDET
AHMSFIDKSDLFFHDYSLAPLFVQENYLHVRPKAAGGDLKSHLMLLSKAADSISDGDLVD
RRIRSGQNWSLLPTQAVYASVLPGELMRGYMSQFPTFPSWLGKHSSTSKHSRIVQELSSH
MGLKTMSSRQAVNLDYLFYLRQALLSPLQRLGAEGAAQAVQLLDDYQLVREDVDSIMEIS
VWGGQPDPYSKLESKVKAAFTRAYNKEVHLTPYSLQVVKKGRRGGGGAGESELGAEEVDN
EAQESEDEGVKLDAMIKRKKGKPIKKETKEASGKGKGKGKGKAKK
NT seq
3558 nt
NT seq
+upstream
nt +downstream
nt
atgctatccaatcagaaactgttggaacctgacatcaggcggttctttgcaccgactgcg
gtgcaagaaaccagccttcaaatgggaaacatcaaaacagaggaggaggagaagaaaaag
aagaagaagaagaatcctctctcttcagacgaggaagtgaaaaagaaagagaccaccaag
gtgaaaagctccaaaacagaggagaaactcaaggatggtgacaaaaaacggaagaagcag
atagtcatagtgtctgactccgacgacgaggagccagtgagaaagtcaaagaaatccccc
aaagagaaacagaagaagagcaaatcagagacgcctcccaaaaaggaccctgtgcagtat
gtctctgagacagactcagacagcgactcatttcagaccctgaagaaggtctccaaaact
aaacccaagcagaacggcacggccaaacagacaaagtcagacgctcgccccgaagccaaa
gagggactgaagtctcccgtccctccctcctccaccaaggggaaaactgcggtgaagtct
cctcctacacccgtcacccctaagtccgccccgcctcctgtccccaaacacacccccact
tcagtactcgactacttcggcagtgcagctgtccaacgttcagagaagaagctcgtagca
agcaccaaacgaaaggcgccaattcaggacacagatgatctgagtgatgagcaaatcgcc
aaacagctgcagatgcacgaggacatggagctggagaagcaggtccatgaggatgaggag
tttgccagaactctggccatgctggatgaggagcctcaagcgaagaaggctcgtaaaggc
tctgatgaaaaaccagcccctaccacattacctaaaaagagcagtccggattctgctgcg
ggcagcctgagcagtccgtcaaagagcagccgcagaggcagcatgtcggaggatgccatt
agtcccacccctaagaagaaccccgcctccgtcagagccggctccaaactggccacgatg
aagaaagagcaagaagagagagatgtatcgtcaaagagcaaaacaattatttcgccatca
aaaatcaaaatctcccccaaaaaggaacccctcgcttctccgagttacgagaagaagttc
actcccaaaacaggaaccacggttaaaacgtctcccaagaaaccagaggtgagcaagagc
acgagtacgagtcctgacgacgcagagaagaagaagaacacggcagctttcaggaacttc
ctcaacagggacggaccccgagctctgggctcaaaggaaatccctcagggtgcagagaac
tgtttggagggctgtgtgtttgtgctgacgggggtcatggagtccatggagagggatgat
gctaaatccctgatcgagcgctacggaggcaaggtgacgggcaacatcagcaagaagacc
acctacatggtgcagggcagagacagcggagtctccaaactcgagaaggcggagagtctt
gggaccaagatcctggatgaagatggtctgttggagctgatcagcaccaaacctggaaag
aagtccaagtacgagatcgctgcagaagctgagaacaaagcctcaaagaccaagaccccc
cccggcaggacttcaaagagcacccccacatctcagaagatctctccctctaagggtaac
tcccgctcccctcacaccccaagcccctcaaagaccggcctggcctcgggccgcggcgcc
gggatccaaggcagagacacccccccggggaggggctcggcccacacagcccggagggag
ctgggcctctcctcttcctcagcagcctccccctcagagaaaggggaggacgccagcctg
ctgtgggtggacaagtaccgcccactctctctgaaggctgtgattggccagcagggagat
cagagctgtgccaacaagctggtccgctggttgcagaactggtaccgacaccacggcagc
ggcacctccaaaccaccagttgcaaggttcggtaagtttggaggcggcaaagatgacgga
tcaggattcaaagctgctctgctctctggacccccgggcgtggggaagaccaccacagca
gccctggtctgtgaggagttgggcctcagttttgtggagatgaacgccagctgcactcgc
agcaaaaacagtttgaaggaagtcgtgtccgagtcactcaacaacacgagcatcgagggc
ttctacaaaggcacatctcagaaagtgaccaataagcacgtcctgatcatggatgaggtc
gatggcatggccggcaacgaggaccgcggaggaatccaggagatgatcagtctgatcaaa
acgtcaaagattcccatcatcttcatgtgcaacgatcgtaaccacatgaagatcaggtcg
ctggcaaaccactgcttcgacctgcgcttccagaggccccgagtggaccagatcaaggga
gccatgatgtcccttgctttcaaggagggaatcaagatcccccctccagctctgaatgag
ataatcctggcctccaatcaggatatccgacaggtgattcacaacctcagcatgtggtcg
gccaaagacaaggtgatgacgtacgatcagtgcaagacggatgcagcgagcgcccgcaag
gacatgaagatgggtccgtttgacgtctgcaggaaggtgttcgtcttcggggacgagacc
gcccacatgagcttcatcgacaaatccgaccttttcttccacgactactcgctagcgccg
ctcttcgtccaggagaactacctgcacgttcggccaaaggctgcgggtggggacctgaag
tcccacctgatgctgctcagcaaggcggccgactccatctctgacggagacctggtggac
cgacggatccgctcggggcagaactggtccctgctgcccacccaggctgtctatgccagt
gtgttacccggcgagctcatgaggggctacatgagtcagttccccaccttccccagctgg
ctcggcaagcactcctccaccagcaagcactctcgcatcgtgcaggagctttcctcacac
atgggattaaagacgatgagcagccggcaggcggtgaacctggactacctgttctacctg
cgccaggcgctgctcagcccgctgcagaggctcggagcggagggcgccgcccaggctgtg
cagctgctggacgactaccagctggtcagggaggacgtggacagcatcatggagatcagc
gtgtggggggggcagccagacccctactctaaactagagtcaaaggtgaaggcagcgttc
acccgggcctacaacaaggaggtccacctgacgccgtactctctgcaggtcgtgaagaag
ggccgccgcgggggtgggggtgcgggggagtcggagctgggagcggaggaggtggacaat
gaagcgcaggagtctgaggacgagggcgtcaagttggacgccatgatcaaacggaagaag
ggcaaacctatcaagaaggagacgaaggaggcttctgggaaggggaaggggaaaggcaaa
ggaaaggccaagaaatga
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integrated database retrieval system
