Pseudochaenichthys georgianus (South Georgia icefish): 117452632
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Entry
117452632 CDS
T09629
Symbol
skic3
Name
(RefSeq) tetratricopeptide repeat protein 37
KO
K12600
superkiller protein 3
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Pathway
pgeo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117452632 (skic3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pgeo03019
]
117452632 (skic3)
Messenger RNA biogenesis [BR:
pgeo03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
117452632 (skic3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_2
TPR_1
TPR_16
TPR_19
TPR_14
TPR_8
TPR_11
TPR_12
TPR_17
TPR_9
TPR_CcmH_CycH
ANAPC3
HAT_Syf1_CNRKL1_N
TPR_BSK1_C
ARM_TT21_C
TPR_MalT
TPR_15
HEAT_Nup120
Motif
Other DBs
NCBI-GeneID:
117452632
NCBI-ProteinID:
XP_033947231
LinkDB
All DBs
Position
9:41089643..41207845
Genome browser
AA seq
1731 aa
AA seq
DB search
MNSSQYLAISLSEINEYFVHFVLTIEVLTHGCIKCGPNRHVILFRKSKGGVANSVSLPCQ
PTAGTEEVFNVNNIDKMSSKEVKAALKNARDAIKNKEFKEALKHCKAVLKLEKSNYNAWV
FIGLAASELDQPDQSQTAYKKAVELEPEQLLAWQGLANLYVKTDQWDFQVELPNVYQKLV
ELYASSDKNKCYETISKLSDIYQSDKEYAKLAKVKLQLIQVKEEEGVDKKELLQLWQQLT
KLLSDCLNGEEQDNEIQQHIITAFEKAMALMDPVPGEEHKKMSADYVKCLSKLPQEEPKM
KEACESMLSLYPNQSYPLEVLCSHYLNTGVQDEGAVSCFSRLLDVAPNSGIGHLGLGTKA
LQEGRFKDAIRDLSQGLKKMSSSTGWCSLAEAQFKMQRYSDSAMSCTQGLTLCVSGDKAL
RVKLLKLKLENLVRSGGEGAADQALETFSQIPDAEKDPVLVALRGHAYLYKGQVDEALEV
SSELVASHPNLTQALVLRGQAHLAQGKLQLAEESFLKAASQSPDCGEYYFLLGRLYWDMG
EETRKDRSKTHTHLLKAAKLDPNLGCVFRYLGHYYREVAKDPARARGCYKKAFEMDKDDA
ESGAASVDLSMEQDDMDTALAILQSVIEKATPGSAKWAWMRRGLYYLKVGEYQQAVSDLQ
AALRADPEDWVCWECLGEAYLNRRSFTAALKAFGKAHQLQPASIYSVYQAAAIKQTLGKF
REAVAEFLQITAQQDYVPALKGLGECQLSVAKIVMEDCRDGGAIDLIQQAIQNLFRAVEL
RPDLSCLWKLLGDACTAVSTVSPNRAQVSMPGPLAGLEPNTQSHTLNQAQTLKVGERCYA
RALKLMSEVPSLWYDLGLNYYHQSSLTCPSGEDQNSSSLLLEKAKQCLKKAIMMDSGNHN
YWNALGVISMSKALENFALAQHCFIKSIQVEPNNVVAWTNLGTLYLKKDNIELAHEAFKI
AQSLEPLYVNCWIGQALIAERVESFDAMDLFRHTTELSTHMEGVKGYAYWVCSTLLDKSN
RDSTLYRYNIVQMNAVSAAQVALSKYTERIQSDPDAFIMLGYLNEHLQLKRQAVQAYKRA
VELLQSMSSEDALAFALGSYGRALCTSGQPEEAVRVYSSTPLQELSDLAGLALSSCRAGL
IPESISAYERALAVASSEKEKAYILTALALLQHRLGNLDSAKTLLFKCSMLKEPIPESLL
CLCALGLVQSDATLSAAALTELLKQGPASGSVIEQRCLLTCALLALQGNYSAVQREASRA
VHSNPGNPSLWALLSRLVPQYYPRKANGGAMAGHVACLSSMTLGKRAMLYSGVNQLANGK
HSGEDRHRNALKTMQRAVMLCPDDPATWAGLMAACHTENTSCYLSGSAPCRRGLEQTLMS
VVSEKVHHVEEIERPLAQTLEGWVLQQAVTGLMLGGQLEQAEALCTQVLSVSPEHPAVML
SLRQVQCQRLLLAGGGTVLPDSVLEQLNNAVMRNPTNLGGWHWLAEVYRSQGLLLQAVMA
YRRSLQISSQLGLHSSQISTLLRLALLALGPSMAGVPGNDWTNMIVEATTEVLKLGSSSV
ALLFQALLHVVTKTAARSVFLTVLYYPLLKVAWKCPSVLHVRGRRIRAVVLSQEQHSHTI
TVIDLVISLPHSPSPSLPLPVAYGGPRSIQAAAKRSRRKTRQGARAPAAMVPVQAPAAMV
PASAYGGPRSIQAAAKRSRRKTRQGARAPAAMVPVQAPAAMVPASVFLLLR
NT seq
5196 nt
NT seq
+upstream
nt +downstream
nt
atgaattcctcccagtatttagctatttctttatccgaaataaatgaatattttgttcac
tttgttttgaccatagaggttttgactcatggatgtattaagtgtggaccaaacagacac
gtcattttatttagaaaatccaaaggaggcgtggctaattctgtttcacttccgtgtcag
ccaactgcaggaacagaggaagttttcaacgtaaacaatattgacaagatgtctagtaaa
gaagtgaaagcagcactaaaaaatgcaagagacgccataaaaaacaaagaattcaaagag
gctctaaagcactgcaaggctgttttgaaacttgagaagagcaattataatgcctgggtg
ttcatcggcttggcagctagtgaactcgatcaaccagatcagtcacagaccgcttataag
aaagctgtggagctggagcctgagcagctgctggcatggcagggcttggcaaatctttat
gtgaagacggatcagtgggacttccaagtggagctacctaacgtctatcagaagcttgtt
gagctgtatgcaagctctgacaaaaataaatgttacgagaccatcagtaagctgtccgat
atctatcagtcggacaaagaatatgcaaagttggcaaaggttaagctgcagctcattcaa
gtgaaggaggaagagggagtggacaagaaagagttactgcagctatggcaacagctgacc
aaactcctttcagactgcctcaatggggaagagcaggacaatgaaattcaacaacatata
atcactgcatttgaaaaggccatggctctcatggatcctgtcccaggagaggaacacaag
aagatgtcagctgactatgtcaaatgtctttctaaactgccacaggaagaacccaaaatg
aaagaggcatgtgagtccatgctctcgctctacccaaaccaaagctatcctctggaggtg
ctttgttctcattacctcaacacaggtgttcaggatgagggtgcagtcagctgtttctcc
cggctcctggatgtggcccctaacagtggaataggtcatctgggtctgggcaccaaagca
ctgcaagaagggaggtttaaagatgccatcagggacctttcacaagggttaaagaaaatg
agctccagcacaggatggtgcagtctggccgaggcgcagtttaaaatgcagagatactca
gacagcgctatgtcatgcacccaaggactgacgctgtgtgtttctggagacaaagcgctg
agggtcaaactgctgaagctgaagctagagaacctggtcaggagtggaggggagggggct
gcagaccaggctttagagacattctcacagattcctgatgctgaaaaagaccctgttctc
gtagcgcttagaggacatgcttacctttataagggacaagttgacgaagcactcgaggtg
tcctcagagctggtggcctctcaccctaacctgacccaggcgctggttctgagaggacag
gcacatttggcgcagggcaaacttcagctggcagaggagagtttcctaaaggcagcgagc
cagagcccagactgtggggagtattatttcttgctgggacgactctactgggacatggga
gaagagacccgtaaagaccggagcaaaacacacacacatttgctcaaggctgcaaagtta
gacccaaacctcggttgtgttttccgctacctcggacattactaccgggaggtggcaaag
gatcccgcgcgggcccgaggctgctataagaaagccttcgagatggacaaggatgatgcc
gagtctggagccgcctcagtggacctcagtatggagcaggacgacatggacactgcctta
gccatccttcagtccgtgatcgagaaagccactccaggctcggctaaatgggcgtggatg
agacgagggctttactacctgaaggtcggagagtatcaacaagctgtatctgacttgcag
gcagctctgagagccgaccctgaggactgggtgtgttgggagtgtttaggtgaagcctat
ttgaaccgccgcagcttcacagccgctctgaaggccttcggtaaagctcaccagctccaa
cccgcctccatctacagcgtctaccaggccgctgctatcaaacagacactcggcaagttc
agagaggcggtcgcagagttcctgcagatcacagcgcagcaggactatgtgcctgctctt
aaaggtcttggggagtgccaactgtctgtggctaaaattgtgatggaagactgtagagac
gggggggccattgatctcattcagcaagccatacagaacctcttcagagctgtggagctg
cgtccagacctgtcctgtctgtggaagctgctgggagatgcttgcaccgcagtcagcacc
gtgtcgccaaacagagctcaggtttcaatgccaggcccgctcgctggtttagagcccaac
acccagagccacacactgaaccaggcccagacactcaaagttggtgagaggtgttatgcc
cgggctttgaagctgatgtctgaggttcccagcctttggtacgacctaggactgaactat
tatcaccagtccagcctgacctgcccctcaggtgaagaccagaactcctcttctctgctc
ctggagaaggccaagcagtgtttaaaaaaggctattatgatggacagtgggaaccataac
tactggaatgccctgggagtgatttccatgagcaaagctcttgagaacttcgctctggct
caacactgcttcatcaagtccattcaagttgaaccaaataatgttgtcgcttggaccaac
cttggcaccctgtatttaaagaaagacaatatagagcttgctcacgaggccttcaagatt
gcccagtccctggagccgctttacgtcaactgctggatcggacaggcgctgatagcagag
agagtggaaagctttgacgccatggatctcttcagacacaccactgaactcagcactcat
atggagggagtgaaaggttatgcctactgggtatgttccaccctgctggacaagagcaac
agagactccacactgtaccgctacaacatagtccagatgaacgccgtctctgctgcccag
gtggctctcagcaagtacacagagaggatccagtccgaccccgatgccttcattatgctc
ggctacctgaatgagcatctgcagctgaagaggcaggccgtgcaggcttacaaaagagct
gttgagcttctccagtccatgtcctctgaagacgcgctggcctttgctctgggcagctat
ggccgtgcattgtgcacctcagggcagccggaggaggcggtgcgtgtttatagctccacc
cccctgcaggagctcagtgatctggctggtctggctctgtcctcctgcagggccggactc
atcccagagagcatcagcgcctatgaacgcgccttggctgtggcttccagtgagaaggag
aaggcgtacatcctgaccgctctggcgctgcttcagcaccggctggggaacctggactca
gccaagactctgctgtttaaatgctcgatgctaaaggagccaatcccggagtccctgctg
tgtctatgtgcgctgggattggtccaaagtgatgctacgctgagcgctgcggcgctgacg
gagctgctgaagcagggccccgcctctgggagtgtgatcgagcagcggtgtctgctcacc
tgcgccctgctcgccctgcaggggaactacagcgccgtgcagcgagaggcttccagagct
gtgcacagcaaccctggaaacccgtctctgtgggccctgctgtccagactggttccacag
tactacccaaggaaggcaaatggtggagcgatggctggccacgtggcctgtctctccagt
atgacgctagggaagagggcgatgttgtacagcggggtgaaccagctggccaatgggaaa
cactctggagaggacagacacaggaacgcactgaagacgatgcagagagctgtgatgctt
tgtcctgatgatccagccacgtgggcgggattaatggctgcctgtcacacggaaaacact
tcctgttacctttcaggttctgctccttgcagacgaggactagagcaaaccctcatgtca
gtggtttcagagaaagtgcaccatgtggaggagatcgagcgccctcttgctcagactctg
gagggctgggtgctccaacaggcagtgactggcctcatgctgggaggacagctggagcag
gcagaagccctctgcacacaggtgctgagtgtttctccagagcacccggcagtgatgctg
tccctgagacaggtgcagtgtcagcgcctccttttggccggtggtggtactgtcctgcca
gactccgtgctggagcaactaaacaacgcagtgatgaggaaccccacaaaccttgggggc
tggcattggctggccgaggtgtatcgtagccagggtctgctcctccaggcggtcatggcc
tacaggcggagtctgcagatctcctcacagctcggcctgcacagcagccagatttccact
ctgctgcgactagccctgctggccctgggaccctcgatggcgggtgtcccaggaaacgac
tggaccaacatgatcgtggaagccaccactgaagtgttgaagctgggctcctcctccgtg
gccctcctgttccaggccctgctccatgttgtgaccaagacggctgcgaggtcagtgttt
ctcaccgtgttgtattaccctctgctgaaggtagcatggaaatgcccgagcgtgttgcat
gtgcgtgggcggagaataagagcagtggtgctcagccaggagcagcacagccacaccatc
actgtgatagacctcgtcatttctctcccccactccccgtctccctcccttccactccca
gtggcttatggaggcccacggagcattcaggcggctgctaagaggagtcgtcgcaagacc
agacagggagcccgggccccagcagccatggtcccagtacaggcgccagcagccatggtt
ccagcctcagcttatggaggcccacggagcattcaggcggctgctaagaggagtcgtcgc
aagaccagacagggagcccgggccccagcagccatggtcccagtacaggcgccagcagcc
atggttccagcctcagtttttctgctcctgcggtga
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integrated database retrieval system
