Pseudochaenichthys georgianus (South Georgia icefish): 117452781
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Entry
117452781 CDS
T09629
Symbol
cspg4ba
Name
(RefSeq) chondroitin sulfate proteoglycan 4
KO
K08115
chondroitin sulfate proteoglycan 4
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
pgeo00535
]
117452781 (cspg4ba)
04091 Lectins [BR:
pgeo04091
]
117452781 (cspg4ba)
Proteoglycans [BR:
pgeo00535
]
Cell surface proteoglycans
Others
117452781 (cspg4ba)
Lectins [BR:
pgeo04091
]
C-Type lectins
Others
117452781 (cspg4ba)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin_3
Laminin_G_2
Laminin_G_1
Cadherin_4
Laminin_G_3
TMEM154
DUF3377
7tm_3
Motif
Other DBs
NCBI-GeneID:
117452781
NCBI-ProteinID:
XP_033947427
LinkDB
All DBs
Position
9:20864226..20891876
Genome browser
AA seq
2418 aa
AA seq
DB search
MSGNSRVSTWRRKMDSVVKNTQKKLWLRGLLWWSLLFELASGASFYGDGFVQLKATESSD
HNTLRIRFRTSSTNGLLFLAAGQNDYFLLELHAGRLQLKLDLGSGELQLQSEKSTQLNDL
AWHSVEVRHVQNNVTLTVDKNSQTGLKIPASNHNLDISDGLFVGGSGGLDKMYQPRDQIG
FRGCMDEVVFNKHDLLSSLRPYTGFKNVHEVSLGCSPQFFATEEDPISFFSSRAYISLPT
WNTQQEAVFECVVHTSANEGIILYSSAREGDFLAVEIQEGLPVAIVGKGGTKTELRSLTS
IYDRKWHTLKLHFRSESLELTVDGEMVKSSISSQSKRLQLKGSLFVGGIDDGTRSEARKV
GLVSVSGKRVRGGSFKGCLKNIEVNRVKTGLSNAVVTKDISVGCEPETKHEPSTTVSQTS
AAGSLFHLVTPRPSLQTSTLAKGLDRKYGSNFVQFKNLVVPEGGRASLEAKHIKVLLDFK
KLGIRQSQIVFQIREQPIRGQIRLDVDQDQEENTFSMLDLWHGRVMYIHGGSEEPDDFFM
FSIYSSSRKQVPDYLKGNQLYRYNITMTPTNDAPELSLPEGNLFVLLENSKKRLTTDVLR
ATDIDSNYTNLVFSVLGNLNADAGYLEIENNPGKSVPSFSYLDLEEEKVFYVHTGVRNSR
IVLRVSDGEKVSNTVVLRVMAVALEYKIANNTGLEIIQGESAILGLKQLAVQTNAIKQIV
DIRYDIIEPPQYGELQRLHSSGEWRHTDSFSQRLLEKGRLRYVSTFQEVQTSNVTDYFKS
KVDVAARATTEILFPITVKWLKYHLVRNVMMDMDKVRKVTLDSDNLFATAEGVVLSENDL
YFRVLTTPKKGKLLLDTTILTKNSTFSQRDVTDQKVHYELVDRPYEDTSDRFKFQLVSKH
AESQNYDFRFTIKADVNSVFMRNDGLSLIEGESKLITKDALFAETLSTKDMFYTVISSPK
HGKLSRITRSNSNASYDNILTFSNQDILEERIMYIHDDSESTQDDFTFIASTSQEFKSSI
TEDEFGSKEGLFNISIQLVNDQKPVRVIDKVFLVVKNGQKLLTIDDLRYHDADSDFDDGQ
LIYTRRGIPMGDLVLVNDTSHRLFQFRQKDLEDKRVLFIHKGVNMGRFVLFVSDGKHIVS
SLLDISAQDAFLKVGNNTGLMVQKGQSVTFSTSNFSIVSNLDIRDDQEVVFKLDEAPKYG
GLYRNETEVELFSLSDFKNGIMSYRHNDSKHVAEYFNLTVQAKGLELAVRINVKVYLESH
QRPPIVLHHNILLVEEGKPVKISEAKLEVTHEDNLPPEIVFTVKLAPSHGFIRRFTDAEE
RYIGTKQSPVRTFTQEDINSGNIQYMQAEPNKMNDTFILDATNGVTDVNGIRMSIDIIPR
LIPVQVFNFTLNEGASKALTEDVLKVTHRHFSGNNFLYSLTEPPQHGHIEHSRHTGVAIT
SFTRRQVEQEFIYYIHDSSETLADNFTVMANDPGLRKQSAAQTVYIQVSAVNDEPPVITA
NRVLRVWVSSVTEIRPEDLRAQDRDSPPEELHFMVIPPSNGHLALKSAPMKALLNFTQAH
IDQGQLLFVHKGAMSGGFNFQVNDGVNFTPRQIFSITARALVLSLENNRPIKVFPGSSTP
ITNEDLQAVTNDISNPSTRIITFSVIRQPKLGRLVTRQPDNSTVDISTFTQDMVDRKEVV
FIQTPIESVGWEAMDSMTFSVASSPTTLDSQTFKMDISYENTGPEHNTVLLANKGAEVTE
GESVIIDESKLDASNLMSKLPTPQQSSHEVWFQVTSLPEHGVIVVGERNLTKEKPNFSQF
IVNKYGITYKHDNSETTHDSFVFSTWLNAKGKTAQRPQDDIDIVEEYFNITITPVNDQPP
LLKTKAPSLKVVQGDTVALRPENLKVEDLDNPPGDIKFSVISKPNNGYLALGEHLNESVE
TFTQAQINNGSVYFIHDGSSVSGVFYFSVTDGHHKPIYKLFNLEVTEITISLVNYTGLTL
EQGKTSVSLTQHNLAAETNGRNFTIHYQITKPPHFGKLLKDNQEVTTFEQEDLQAGRLSY
HMISLSSAEDSFVFTAFTSEANLTNQVFNITVRPLIQVGKGFSIPNGIAVKLNAGFLNAS
ELANISNSDPTFEIISHPKYGKVVWTKPKMSKKAVPAESFTFQEVMQEMVALQLNANMTG
VQELNDSLVFVLKADNVQPAKGEFHFTVVPYDAALFPTTKSPVPTTSSVPRTPIHTSRNG
TALPVLSTAFLSTQQTSKNQQKVKARNRWGNSNRTSIFSTTLGKPTQGTEDFPFRNTPVR
VESYPQKTSSPLLVILPLLALLLLIIIFVVLVVFLRHHRHRRTSSSKETAATDVPSSQSY
HGQPQRSPTVPTVTVTPLNPSCPNSPLFDRLLMTSQGSAYNTVDSNILLSSWKNSSPASS
SEIIRTTTPTLQMNQYWV
NT seq
7257 nt
NT seq
+upstream
nt +downstream
nt
atgtccggtaacagtcgtgtttctacctggagaagaaagatggactctgttgtgaaaaac
acccagaagaagttgtggctccgtggtctgctttggtggtcgctcctgttcgagctggcg
tcgggagcttccttctacggtgacggctttgtacagctcaaggcaacagagtcgtccgac
cataacacgcttcgcattcgctttcgaacctccagtaccaacggcctgctgtttctcgcc
gccggccagaacgactactttctactagagctccatgctggtcgcctgcagcttaagctt
gacctcggatcaggggagctacagttacagtcagagaaaagcacccagctcaacgacctg
gcctggcactccgtggaggttcgccacgtgcagaacaacgtaaccctgactgtggacaag
aactctcaaactggtcttaagattcctgcctccaatcataatctcgacatttcggatggg
ctttttgtcggaggctcaggaggcctggacaaaatgtaccaacccagagaccagattggc
ttccgcggctgcatggacgaggtggtcttcaataaacatgacttgttgtcatcactgagg
ccatataccggattcaagaatgtccatgaggtttctttaggctgtagtccccaattcttt
gccacagaggaggaccctatcagtttcttcagctccagggcttacatctctcttccaacc
tggaacacccagcaggaagcagtttttgagtgtgtcgtgcacacttcagccaacgaggga
attatcctgtacagttcagccagagagggggacttcctggctgtggagattcaggaaggt
ttgccagtggccattgttgggaaaggtggaaccaaaactgagcttcgatcacttacatca
atttatgacaggaaatggcatactttgaagttgcatttcagatccgaaagccttgagctt
actgttgatggagagatggtgaaaagcagcattagctcccagtcaaagaggcttcagctt
aaaggttctcttttcgttggaggtatagatgacggcaccagatcagaggccagaaaggtg
gggcttgtctctgtgtctggtaagcgtgtcagaggaggttcctttaaaggatgtctgaag
aacattgaagtcaacagagtgaaaacaggtctttccaatgctgtagtcaccaaggatatc
tcagttggttgtgagccggagacaaaacatgaaccatcaaccactgtgagtcaaacaagt
gctgctggatctctttttcacttggtaaccccaagaccatcacttcaaacttccaccctc
gcaaagggcttggacagaaagtatggctcaaactttgtgcagttcaaaaaccttgtggtc
cctgaaggtggtcgagcatccctcgaggcgaaacacatcaaggtgctcttagacttcaag
aagcttggcattcgacagtctcagattgtgttccaaattcgggagcaaccaattcggggt
cagataaggcttgatgtcgaccaggaccaagaggagaacacctttagtatgttggacctt
tggcatggaagagtgatgtatatccatggaggctcagaggaaccagatgatttcttcatg
ttttcaatttattcgagtagtagaaagcaagttcctgattatctgaagggcaaccaattg
taccgttacaatattactatgacacctaccaacgatgcacctgaattgagtctccctgaa
ggtaatctctttgtgctgttggagaactcaaagaaacgcctcaccactgatgttctgagg
gccacagacattgacagcaactacaccaaccttgtcttttctgtgcttggaaacctgaat
gctgatgcaggatatttggagattgaaaacaacccaggcaagtcagtgccctcattctca
tatctagacttggaggaagagaaggtgttctatgttcacacaggagttcgaaactcaaga
atagtccttagagttagcgatggggaaaaagttagcaatactgtggttttaagggtcatg
gctgtagcactggagtataagattgccaacaacacaggccttgaaatcattcaaggagag
tcagctatacttggtttaaaacagctggctgtgcaaacaaatgctataaaacaaatagtt
gacatccgatatgatataattgaaccccctcagtatggagaactccagagacttcactca
agcggtgaatggaggcatactgactcattttctcaaagacttcttgaaaaagggcgacta
aggtatgttagcacttttcaagaagtccagacgtccaacgtgaccgattactttaagagc
aaagttgatgttgctgcaagggcaaccactgaaatactttttccaatcacggtgaagtgg
ttgaagtaccacctggtgaggaatgttatgatggatatggataaagttagaaaagtgaca
ctggactcagacaatctttttgccactgcggaaggtgtggtactctcagagaatgacctc
tattttcgggttctcaccacaccgaagaaagggaagctcctgctcgacaccactatcttg
accaagaactcaacctttagccaaagagatgtgactgatcaaaaagtacattacgagctg
gttgacaggccttatgaagacacaagtgacaggttcaagtttcagctggtttccaaacat
gctgagtcacaaaactatgactttcggtttactattaaagctgatgtcaacagcgtgttt
atgagaaatgatggactctcacttatcgagggagaaagcaaacttattacaaaagatgct
ctgtttgcagagactttgagtacaaaggatatgttctacacagtaataagcagcccaaaa
catgggaagctatcccgtattactcgatcaaattccaatgctagctacgacaacatctta
accttcagtaatcaagatatattggaggaacggataatgtatatccatgatgacagtgaa
tcaactcaagatgatttcacttttatagcctccaccagccaagaatttaaatcctcaatc
acagaagatgaatttggttccaaagaaggattgtttaacatatcaattcagctagttaat
gaccaaaagccggtacgtgttattgataaggttttcctagtagtaaagaatggacagaag
ttactcacgatagatgatttgcgttatcatgatgcagactctgactttgatgatggccag
ttgatttacactcgacgtggaatcccgatgggagatctagtgctcgttaatgacacctct
caccggctgttccagttccgacagaaggatttggaagacaaacgagtgttgtttattcac
aaaggtgtaaacatgggcagatttgtgctctttgtctccgatggaaaacacattgtatcg
agtcttttagacatcagtgcacaggacgctttcttgaaagttggcaacaatactggccta
atggttcagaagggccagtcagtaaccttttccaccagtaattttagtattgtttcaaat
ttggatatcagagatgaccaggaggtcgtcttcaagttggatgaggcccccaagtatgga
ggactttatcgcaatgaaacagaagtggagttattttcactgtctgacttcaagaatggg
ataatgtcctatcggcacaatgacagcaaacatgttgccgagtatttcaacttaacagtg
caggcaaaaggtcttgaacttgcagtgaggatcaatgtgaaagtgtacctggaaagtcat
caaaggccacccattgtgctgcatcacaacatcctactggtggaagaggggaaaccagtg
aagattagcgaagccaaactagaggtcactcacgaagacaacctgccacctgagattgta
ttcacagtcaagctagccccatctcatggctttatccggcgttttaccgatgcggaggag
cgctacatcggaaccaaacagtcccctgtcaggacatttacccaagaggacattaacagt
gggaacatccagtacatgcaggcggagcccaacaaaatgaacgacactttcatcctcgat
gctaccaacggagtgactgatgtcaacggcattaggatgtctattgacatcatcccacgc
ctcatcccagttcaagtcttcaatttcacgctgaacgagggcgcctccaaggctcttact
gaagatgtgctcaaagtcacccacagacacttttctggaaacaacttcctgtatagtttg
actgagcccccgcagcacggtcacattgagcactctcgacataccggtgtggccataacc
tctttcaccaggaggcaggtggaacaggaattcatttactacattcacgacagcagtgaa
accttagctgacaacttcactgtgatggccaacgacccgggcctgaggaagcagagtgcg
gcccagacggtgtatatccaggtgtcagctgtcaacgacgagcctcctgttataacagcc
aaccgggtcctcagggtttgggtgtcctcggtgacggagatcaggccggaggatctgaga
gcgcaggaccgggactccccccccgaggagctgcacttcatggtgatcccccccagcaac
gggcacctggccctgaagagcgcccccatgaaggccctgctcaacttcacccaggctcac
atcgaccaggggcagctgctgtttgttcacaaaggtgccatgtctggaggattcaacttc
caagtgaacgatggtgtgaacttcactcccaggcagatcttcagcatcactgccagagcc
ttagttctcagcttagagaacaaccgtccaatcaaggtgtttccaggctcttcaactcca
atcaccaatgaggacttacaagcagtgaccaatgatattagcaacccctcaacccgcatc
attacattcagtgtgattcggcagcctaaacttgggcgtctggtgacgaggcagcctgac
aattcaacagtggatatttccactttcacacaagacatggtggacaggaaggaagttgtg
ttcattcaaacacccatcgagtcagtgggctgggaagccatggactccatgaccttctct
gtggcatcatcgcctacaactctggacagccagaccttcaaaatggacatttcctatgag
aataccggacctgaacacaacacagtcttgctcgcaaacaaaggtgctgaggtaactgaa
ggggagagtgtcatcatcgatgaatccaagttggatgcctctaacctgatgtccaagctg
ccgacacctcagcagagctcccatgaggtctggttccaggtgacctctctgcctgagcat
ggtgtcatagtggtaggagagcgaaacctcaccaaagagaaacctaacttctcccagttc
atcgttaacaaatacggcattacctacaagcacgacaactcagagactactcatgattct
tttgtattcagtacatggttaaatgctaaggggaaaactgctcaacgtccccaagatgac
attgatatcgttgaggagtattttaacatcacaatcacacctgtgaacgatcagccacct
ttgctaaaaaccaaagctccaagtctgaaggtggtacaaggagatacggtagccctcagg
cctgagaacctcaaagttgaagacttagacaatcctcccggtgatataaagttctctgtg
attagcaagccaaacaatggctacctagctcttggagaacatttgaatgagtcggttgag
accttcactcaagcccaaatcaacaatggaagtgtctatttcatccatgatggaagctca
gtgtcaggggtgttctacttcagtgtgacggatggccatcataaaccaatatataaactc
tttaacctagaagtgacggaaatcaccatttctctagtaaactacactggattgacactt
gagcaaggcaagacttcagtatccctgacccaacacaaccttgctgctgagaccaatggg
agaaacttcaccatacactaccagattacaaagcctccacattttggcaagcttttgaag
gacaaccaagaggtgacaacgtttgaacaggaggatctacaggctggaaggttgtcctac
cacatgatctccctttcctctgcagaggacagctttgtattcactgccttcacttcagag
gcaaatttgaccaatcaagtgtttaacataacagtcagacctttaatccaggttggcaaa
ggttttagcattccaaatggtattgctgtcaaactcaacgctggctttcttaatgcctct
gaactggctaatatcagtaatagtgaccctacatttgaaattatctcccatcctaagtat
gggaaggttgtttggacaaaacctaaaatgtccaagaaagctgtaccagctgagtccttc
acctttcaggaggtgatgcaggagatggtagccttgcagctgaatgccaacatgacggga
gttcaagagctaaatgactcactggtgttcgtactgaaagctgataacgtccaacctgct
aaaggcgagttccattttacagttgtcccatatgatgccgcactttttccaaccacaaag
agtcccgttccaaccacatcatctgttcctcgaactccaatccacacttccagaaatggg
actgctttgcccgtcctgtcgacagctttcctctccacccagcaaacaagcaaaaaccag
caaaaggtcaaggcacgcaaccgatggggaaactccaacagaactagcatatttagcacg
actcttggcaagcccacacagggaacagaggacttcccctttaggaacacacctgtacgc
gtagagtcctaccctcaaaaaacctccagtccgctcctggtcatcttaccactgctggcc
ctgctgctgcttataatcatctttgtagtcttggttgtctttcttcgacaccacaggcat
cggagaacttcctcatcaaaagagaccgctgccactgatgttccaagcagtcagtcctac
catggtcaaccccagaggagcccaacagttcccacagtgactgtcactccattaaacccc
agctgcccaaatagccccttgtttgatcgcttattgatgacaagtcagggctcggcgtat
aacactgttgattctaacatacttttaagttcttggaagaacagttcccctgcatcgtct
tccgaaattattagaaccaccactcccactctgcagatgaatcagtactgggtatga
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integrated database retrieval system
