Pseudochaenichthys georgianus (South Georgia icefish): 117452891
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Entry
117452891 CDS
T09629
Symbol
smarca2
Name
(RefSeq) probable global transcription activator SNF2L2
KO
K11647
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Pathway
pgeo03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
117452891 (smarca2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pgeo03021
]
117452891 (smarca2)
03036 Chromosome and associated proteins [BR:
pgeo03036
]
117452891 (smarca2)
Transcription machinery [BR:
pgeo03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
117452891 (smarca2)
Chromosome and associated proteins [BR:
pgeo03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
REST complex
117452891 (smarca2)
Chromatin remodeling factors
BAF complex
117452891 (smarca2)
PBAF complex
117452891 (smarca2)
GBAF(ncBAF) complex
117452891 (smarca2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
SnAC
Bromodomain
HSA
BRK
QLQ
ResIII
HDA2-3
DEAD
Motif
Other DBs
NCBI-GeneID:
117452891
NCBI-ProteinID:
XP_033947591
LinkDB
All DBs
Position
9:complement(12944438..13027295)
Genome browser
AA seq
1599 aa
AA seq
DB search
MSTPLDTSGGMSHPGPSPGAGLSPGPILGPSPGPDPSPGSVHSMMGPSPGPGTPNAPHGI
QGQSEYSQDGMYPMHKSMEGMNEKTMADAMHFGHMKGVGMRSLHSGMGPPQSPMDQHSQG
YISPHPSPMGVHEHASSPMSGGGGGGGGPKPPPPSQSGPLMPTDPQSAGPNMSNMSPQGR
GPSAFSPVQLQQLRAQILAYKILGRGQPLPENLQLAVQGKRTLPTMQQQQQQQQQQQLQQ
QQQQQAPSASPYNRPPGMPMAPLGGLQSSPCPTPTMQGHNQSTGPKPWPEGQGVENQANA
QKHLTPIPSGRPSPAPPQASAVPAGPMPGSSLTPQPPGQQVSPMIQMQKQNRITPIQKPQ
GLDPVGILQEREYRLQARIAHRIQELESLPGSLAPDLRNKATVELKALRLLNFQRQLRQD
VVACMRRDTTLETALNSKAYRRSKRQTLREARMTEKLEKQQKLEQEKKRRQKHQEYLNSI
LQHAKDFKEYHRSISGKMQKLTRSIATWHTNTEREQKKETERIEKERMRRLMAEDEEGYR
KLIDQKKDKRLAYLLQQTDEYVANLTTLVYEHKAAQAAKDKKKKKKKKKVDGDGEGTSAI
GPDGEPLDESSQTSELPVKVIQTETGKVLQGTDAPKSGQLEAWLEMNPGYEVAPRSDSEE
SSSEFEEEDEDEGAKAERKEEIEERKIIDPSGIEEFVADTTDIILSAIQVDDEYSVPTGQ
TSTASYYGAAHAVIERVEKQSTLLINGTLKHYQVQGLEWMVSLYNNNLNGILADEMGLGK
TIQTIGLITYLMEHKRINGPFLIIVPLSTLSNWVYELDKWSPSVVKVAYKGTPVLRRGLV
PQLRSGKFNVLLTTYEYIIKDKNILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPR
RLLLTGTPLQNKLPELWALLNFLLPTIFKSCNTFEQWFNAPFAMTGERVDLNEEETILII
RRLHKVLRPFLLRRLKKEVESQLPEKVEYVVKCDMSAIQKVLYRHMQRGILLTDGSEKDK
KGKGGSKTLMNTIMQLKKICNHPYIFQHIEESFSEHLGFPNGVISGLELYRASGKFELLD
RILPKLLATNHRVLLFCQMTTLMTIMEDYFSYRNFQYLRLDGSTKADDRAMLLTKFNEQG
SQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCT
VNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSGNERQAFLQAILLTEEQNEEEDEIPDD
ETLNQMIARNEDEFELFMRIDMDRRREDARNPKRKPRLMEEDELPSWIIRDEAEVDRLTY
EEEEEKMFGRGSRCRRDVDYSDTLTEKQWLRAVEDGNLEEMEEEIRLKKRKRKRRQDKDS
SSRDEGGSKAKKKRGRPPADKHSPNHPKVTKQMNTIIDTVINYRDGAGRQLSEVFVQLPS
RKELPEYYELIRKPVDFKKIKDRVRNHKYKGVGDLERDVMLLCHNAQTFNLEGSQIYEDS
IVLQSVFKSARQKIAKDEESEDDSDEDDDDDDDDDDDDDESETEAKSVRVKIKRKKKEAR
SHDKGKKKQSRGKAKPVVSDDDSDEDPDDNDQSDKSDDD
NT seq
4800 nt
NT seq
+upstream
nt +downstream
nt
atgtccacccctttagacacatcaggtggtatgtcccatcctggcccttctccgggggca
ggtctgtccccagggcctatcctgggccccagccctggacctgacccctccccaggctct
gttcacagtatgatgggacccagccctggccctggaacacccaatgcaccgcatggcatt
cagggtcaaagtgaatactctcaggacggcatgtatcctatgcacaagtctatggagggg
atgaatgaaaagaccatggcagatgcgatgcactttggtcacatgaaaggtgtcgggatg
agatctctgcatagcggcatgggacccccacagagtccgatggaccagcacagccaagga
tacatatccccacatccgtctccaatgggggtccatgagcatgcttctagtcccatgtca
ggaggtggaggtggtggtgggggacccaaacccccacctccctcccagtccggccctttg
atgcccacggaccctcagtcagccgggcccaacatgtccaacatgagccctcagggccgc
ggaccctctgccttcagtccggtgcagctgcagcagctcagagcgcagatcctggcctac
aagatcctgggccgaggccaacccctgccagaaaacctccaactagctgttcagggcaag
agaactctacccacaatgcaacagcagcagcaacaacagcaacaacagcagcttcagcag
cagcagcagcagcaggcacccagtgctagtccttacaacaggcctccaggtatgccaatg
gcacctttgggtgggctgcagtcaagcccctgccccaccccaaccatgcaaggacacaat
caaagcacaggacccaagccgtggcctgagggtcagggtgttgaaaatcaagccaacgcc
cagaagcacctcactcctattcccagtggacgcccgtcccctgcacccccccaggcctct
gctgtgccagccgggcccatgccaggcagttcactgaccccccagcctccaggtcagcag
gtgtcccccatgatccagatgcagaaacagaaccgcatcacgcccatccagaagccccag
ggcctggacccagtggggatcctgcaagagagagagtacaggttgcaggctcggattgct
catcgaatccaggagctggaaagtttgcccggctctctcgcccccgacctgaggaataaa
gccaccgtggagctcaaggccctgcgtctgctcaacttccagcggcagctgagacaggac
gtggtggcgtgcatgaggcgagacaccaccctggagacagccctcaactcaaaggcttac
agacgcagcaagaggcagacgctgagggaggcgcgcatgacggagaagctggagaagcag
cagaagctggagcaggagaagaagcgcagacagaaacaccaggaatatctcaacagcatc
cttcagcatgcaaaggacttcaaagagtatcaccgctcgatttctggaaaaatgcaaaag
ctcaccagatccatcgccacctggcacaccaacacagagagggagcagaagaaggagact
gagagaatcgagaaggagaggatgaggaggctcatggcagaagatgaagaaggctaccga
aagctaatcgaccaaaagaaagacaagcgtctggcctacttgctgcagcagacggatgaa
tacgtggctaacctcaccaccctggtgtacgaacacaaagctgctcaggctgccaaggac
aagaaaaagaagaagaagaaaaagaaggtggatggagacggtgagggcaccagcgctatt
ggacctgatggagagcccctggacgagagcagccagacgagtgagctgccggtcaaagtg
attcagacggagaccgggaaagttttgcagggaacggatgctcccaaatccggccagctg
gaggcctggctcgagatgaaccctgggtacgaggtggccccgcggtcggacagtgaggag
agcagctcagagtttgaggaggaggacgaagatgagggggccaaggctgaaagaaaagaa
gaaattgaagaaaggaagatcatcgatcccagtggaattgaggagtttgtcgctgacacc
acggatattattctgtcggccattcaggtggacgatgagtacagtgttcctaccggacaa
accagcaccgcgtcttactacggtgccgcccacgctgtcattgagagggtggagaagcag
tcaacgctgttgatcaacggcacactcaaacattaccaggtccaggggctggagtggatg
gtgtctctgtacaacaacaatctaaacggcatcctggctgatgaaatgggcctcggcaaa
acaatccaaaccattggccttatcacctacctgatggagcacaagaggatcaacgggccc
ttcctcatcatcgttcctctctcgactttgtctaactgggtgtatgaacttgacaagtgg
tccccctctgtggttaaggttgcttacaaggggacccctgtgttgcgccgtgggcttgtg
cctcaacttcgcagtgggaagttcaacgtcttgctgaccacttatgaatacatcatcaag
gacaagaacatactggccaagattcgttggaagtacatgattgtggacgagggtcaccga
atgaagaaccaccactgtaagctgacccaggtgttgaacactcactatgtggccccgcgc
cgcctcctcctcaccggcacccccctgcagaacaagctgcccgagctgtgggccctgctc
aacttcctgctgcccaccatcttcaagagctgcaacaccttcgagcagtggttcaacgcc
ccattcgccatgacaggagagagggtcgacctaaatgaggaggagaccatcctgattatc
cggcgtttgcacaaggtgctccgccccttcctgcttcgcagactgaagaaagaggtggag
tcccagctgccagagaaggtggagtatgtcgtcaaatgtgacatgtctgccatacagaag
gttttgtaccgccacatgcagagaggcatcctcctcactgacggctcagagaaagacaag
aagggcaaaggagggtcaaagaccctgatgaacaccatcatgcagctgaagaaaatctgc
aaccatccctacatcttccagcacattgaggagtctttttcggagcacttgggctttcca
aatggcgtcatcagtgggctggaactgtatcgagcttcggggaagtttgagctccttgat
cgcatcctgcccaaactgcttgccaccaaccacagagtgctgctgttctgccaaatgacc
actctcatgaccatcatggaggactacttcagctaccgcaacttccagtatttacgtctc
gacggaagcaccaaggctgacgaccgcgcaatgctgctgacgaaatttaatgagcaagga
tctcagtacttcatcttcttgctcagcaccagagccgggggcctcggcctcaacctgcag
gccgccgacaccgtggtcatcttcgacagcgactggaatccacaccaggacctgcaggct
caggaccgggctcaccgcatcggccagcagaacgaggtgcgcgtgcttcgtctctgcacc
gtcaacagtgtggaggagaaaatcctggcagctgccaaatacaaactcaacgtggatcag
aaggtcatccaggcgggcatgttcgaccagaagtcctcaggcaacgagcgccaagctttc
ctccaggccattttactgactgaggagcagaatgaggaagaagatgagatacccgatgat
gaaactcttaaccagatgatagcccgcaatgaagacgaatttgagctcttcatgcgcatt
gacatggaccgacggcgggaggatgccaggaacccaaagcgcaagcctcgcctcatggag
gaggacgagttgccttcttggatcatcagagacgaagctgaggtggaccgcctcacgtac
gaagaggaggaggagaagatgttcggccgggggtctcgctgccgtcgggacgtggactac
agcgacacgctcactgaaaaacagtggctgcgggccgttgaggatggaaacctggaagag
atggaggaggagatccgcctgaagaagcgcaaacgcaagagacgccaggacaaggactcg
tcgagcagagatgaagggggctccaaggccaagaagaaacgtggacgcccaccagctgat
aaacactcccccaaccaccccaaagtcaccaagcaaatgaacaccatcatcgatacggtc
atcaactacagggatggggcagggagacaactgagcgaggtcttcgtccagttgccttcc
aggaaagagctcccggaatattacgagctgatcagaaaacctgtggacttcaaaaagatc
aaggatcgtgtgaggaaccataaatacaaaggagtgggagacctagagagggatgtgatg
ctgctttgtcacaacgcccaaaccttcaacctggagggatcccagatatacgaggactcc
attgtccttcaatctgtgttcaagagtgcaagacagaagattgccaaggatgaagagagt
gaagatgacagcgatgaagatgatgatgacgatgatgatgatgacgacgacgacgacgag
tcagagactgaggctaagtctgtgcgggtcaagatcaagcggaaaaagaaggaggcgcgc
agccacgacaaaggcaagaagaagcagagccgagggaaggccaagcctgtggtcagcgat
gacgacagcgacgaagacccggatgacaatgaccagtcagacaagagtgacgatgactga
DBGET
integrated database retrieval system
