Pseudochaenichthys georgianus (South Georgia icefish): 117453021
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Entry
117453021 CDS
T09629
Symbol
tncb
Name
(RefSeq) tenascin isoform X1
KO
K06252
tenascin
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Pathway
pgeo04510
Focal adhesion
pgeo04512
ECM-receptor interaction
pgeo04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
117453021 (tncb)
04518 Integrin signaling
117453021 (tncb)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
117453021 (tncb)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
pgeo00536
]
117453021 (tncb)
Glycosaminoglycan binding proteins [BR:
pgeo00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
117453021 (tncb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
fn3
EGF_TEN
Fibrinogen_C
EGF_Teneurin
EGF_Tenascin
EGF_2
FN3_DSCAM-DSCAML_C
Fn3_Dep-1_3rd
DUF7949
Fn3_Dep-1_2nd
Pur_ac_phosph_N
Fn3_VIN3
EGF
FN3_Tor_3rd
fn3_2
REJ
hEGF
NDNF_C
Motif
Other DBs
NCBI-GeneID:
117453021
NCBI-ProteinID:
XP_033947754
LinkDB
All DBs
Position
9:complement(3839975..3912238)
Genome browser
AA seq
1692 aa
AA seq
DB search
MGIKGFLLGFMTVTLLLEISTAGLVKKVIRHRRDALSPKQTQENITLPRSDQPVVFNHVY
NINVPSTSLCSVDLDAPGDTDLKQKSAPMDMQNSEHMEHTMDGDNQIVFTHRINIPKQAC
GCDNQLPDIKNILSRLEMLESELSSLREQCSGGTGCCGAQVTGEVSTKPFCNGHGNWSTE
TCSCICEPGWKGPNCTEPECPNDCQDQGRCVDGKCECFEGFGEDDCSSELCMLDCGDYGH
CVEGFCLCEDGFIGEDCAQTNCLNNCLGRGRCVEDECVCDEPWTSFDCSELICPNDCYDR
GRCVNGTCFCEEGYTGEDCGELTCPSNCNNRGMCVNGQCVCQIGYSEEDCSMLTCPKNCN
ERGHCFNGKCICDPGYEGKDCSILSCPDNCSNRGQCVNGECVCDVGFQGEDCSELSCANN
CQDRGRCVNGKCICNKGYGGEDCSTKTCPKDCMGRGECVDGKCVCFVGFSGKSCGELTCP
NDCLDQGRCVNGQCVCHKGFTGEDCSEKTCPKNCLERGYCVDGECVCYEGFTGSDCSMLT
CPENCQNQGRCDNGVCICDEGFLGEDCSEVSPPKELAVEEVSPETVDLSWKNEMRVTEYL
ITYVPTAVGGLELDMRVPGDQIMSTIKELEPGVEYLISVYAVLNNKKSLPVSARVATHLP
EPEGLKFKSVRETSVAVEWDPLDIPFDGWNIIFRNTKEEDGEILNSLGRPETTFEQSGLG
PGQEYEVKLEVVKNNKRGPPASQNVVTMIDAPSQVDVRDVTDSTALVTWSQPVALVHGVS
ISYGPSSNPADRSVVELSFSDTQYHLGGLSPDTQYEVSLSSRMGEQSSIPVFQSFLTDLD
APKDLQTVELTDESITLEWKNSQAPVENYRIKYGPLSGGEHGELLFPPGPRDTTTAKITG
LRPGAEYGMGVTAVTDERESRPTTTNAVTALDAPKDLAVTEVTETTMMLQWKRPLAKLDS
FRLVYVSADGHRAEDVLPGSSESRLLRGLTAGMLYTVSIIAERGRRTSLPSTISASTEEE
RPVVVNVTVSDVSWDSFLLSWATEDRRLEGFLIEVTDAETGSDWQNHTVSADARSIAISG
LSSSTWYRANLYGVYRGALLEPVFADTITEAEPEVQALLVSDVGPESFKLAWVAEEDAFD
TFVIMVSQVELGRPRELVLGGDERSTNITDLTEDTEYEIQIFGLFLGRPSKSVKEGVITD
LGSPKGIRFSDVTDTSTTVHWVVPRARVDSYRVTYVPAHGGNAKTLTVEGSEAHTVLSNL
TPGVTYEVTVVSVKGQRESEPGSDSVTTALDKPRGLTAVNITDSEALLLWQPAIATVDGY
VITYSADSVAPVMERVSGNVVEFDMSSLSPATHYTVKVFAVRDLSKSAATTTEFTTDVDA
PQDLAASNIQTENGLLSWKPPRADITGYILSFESVDGTIREVVLSPNAVSYNMAQLSAST
QYSVKLQAIAGPKRSRVITTVFTTTGVLYKYPRDCSQALLNGDTSSDLYTIYLGGDESQP
VQVYCDMATDGGGWIVFLRRQSGRLEFFRNWKNYTAGFGDMNDEFWLGLSNLHKITVGGP
YELRVDLRDKGETAFAQYDKFSISEPRSRYKVHVGGYSGTAGDSMTYHHGRPFSTYDHDN
DIAVTNCALSYKGAFWYKNCHRVNLMGRYGDNSHSKGVNWFHWKGHEHSIEFAEMKIRPS
NFRNLEGRRKRS
NT seq
5079 nt
NT seq
+upstream
nt +downstream
nt
atgggcattaaaggcttcctcttgggctttatgaccgtgaccctgctcctcgagatctcc
actgctggcctggtcaaaaaggtcatccgccaccgaagagatgctctgagtccgaagcaa
acccaggagaacatcaccctgccccgctccgaccagccggtggtgttcaaccacgtctac
aacatcaacgtcccctccacgtccctctgctccgtggacctcgacgcccctggtgatacc
gatctcaaacaaaagagtgccccgatggacatgcagaacagcgagcacatggagcacacc
atggacggagacaatcagatcgttttcacccaccgcatcaatatccccaagcaggcgtgt
ggctgcgacaaccagctgcccgacatcaagaacatcctgagcaggctggagatgctggag
tccgagctgtcgagtctgagggagcagtgcagcggagggacgggctgctgtggggctcag
gttacaggtgaagtgtccacaaagcccttctgtaatggccatggtaactggagcactgag
acctgcagctgcatatgtgagcctggatggaagggccccaactgcaccgagcctgagtgc
cccaacgactgccaggaccagggccgctgtgtggacggcaaatgcgaatgctttgagggc
tttggtgaggacgactgcagcagtgagctctgcatgctggactgcggtgactatggccac
tgtgtggagggcttctgcctctgtgaggacggcttcatcggggaggactgtgcccagacc
aactgcctcaacaactgcctcggccgcgggcggtgcgtagaggacgagtgtgtctgcgac
gagccgtggacgagcttcgactgctccgaactcatctgtccaaacgactgctacgaccgc
ggacgctgtgtcaacggcacctgcttttgtgaagagggctacaccggagaagactgtggg
gagctcacctgtcccagcaactgtaacaaccgtggcatgtgtgtgaacggccagtgtgtg
tgccagatcggctacagtgaagaggattgctccatgctcacctgtcccaagaactgcaac
gaaagaggccattgcttcaacgggaaatgcatctgtgatccaggatatgagggtaaagat
tgctccatcctctcctgccccgacaactgtagcaacaggggccagtgcgttaacggagaa
tgtgtgtgtgacgtaggcttccaaggcgaagactgtagcgagctctcctgcgctaacaat
tgccaagaccgtggtcgttgcgttaacggaaagtgcatttgtaacaaaggctacggcggg
gaggactgcagcaccaagacctgtccaaaagactgcatgggacgtggagagtgcgtggac
ggcaagtgtgtgtgcttcgtcggcttctctgggaaatcctgcggcgagctgacctgcccc
aatgactgcctggaccaaggtcgctgtgtcaacggacagtgcgtctgtcataagggcttc
actggcgaggactgcagcgagaagacctgtcccaagaactgtcttgagagaggttactgc
gtcgatggcgagtgtgtgtgttacgaaggtttcaccgggtcggactgctccatgctgacc
tgcccagaaaactgccagaaccagggacgctgtgataacggagtttgcatttgcgatgag
ggcttccttggagaggactgctctgaggtctccccaccaaaggagctggcagtggaggag
gtcagcccagagacggtggacctgtcctggaagaatgagatgcgtgtcacagagtatctg
atcacatatgtaccaacggccgtcggcggtctggagctggacatgcgggtgcctggggac
cagataatgtccaccattaaggagcttgagccaggtgtagagtacctgatcagtgtctat
gctgtgctcaacaacaagaagagtcttccagtcagcgctcgggtggctacacatctgcct
gagcctgagggactgaagttcaagtcagtgagggagacgtcagtggcagtggagtgggat
ccgttggacattcccttcgatggctggaacatcatcttcagaaacacgaaagaggaagat
ggtgagattcttaactccctcggccgtcccgagaccaccttcgagcagtcgggcctgggc
cccggccaggagtacgaggtcaagctggaggtggtgaagaacaacaagcgtggaccgcct
gcctcccagaacgtggtcacaatgatcgacgcccccagccaggtggatgtgcgcgacgtg
acggactccacagcgctggtcacatggtcccagcccgtggctctggtgcacggggtcagc
atctcctacgggcccagctccaaccccgcggatcgcagcgtggtggagctgtccttcagt
gacacccagtaccacctcggaggcctctcccccgacacccaatacgaggtgtctctgtcg
tctcgcatgggcgagcagagcagcattcctgtgttccagtctttcctcacagacctggat
gcccccaaagacctgcagacagtggagctgacggacgagagcatcactcttgagtggaag
aacagccaagctccagtggaaaactaccgcatcaagtacgggcctctgtccgggggggag
cacggagagctgctcttcccccccggaccccgggacaccaccacagccaagataaccggc
ctgagacctggtgcagagtacgggatgggcgtaaccgcggtgaccgatgagcgggagagt
cggccgacgaccaccaacgcagtgactgcactggatgctcccaaggatctggctgttacg
gaggtgacggagaccaccatgatgctgcagtggaaacgccccctggctaagctggactcc
ttcagactggtgtacgtgtcggctgacggccacagggcggaggacgtgctgccgggcagc
tccgagtcccgcctcctgaggggcctgacagccggcatgctgtacaccgtcagcatcatc
gctgagaggggccgcaggaccagtttacccagcaccatctcagcatccacagaggaggag
aggcctgtggttgtcaatgtcaccgtcagcgatgtgtcgtgggacagcttcctgctgtcc
tgggccactgaggacagaaggttggagggctttctgatcgaggttacagatgcagagacg
ggctctgattggcaaaaccacacggtgtccgccgacgctcgcagcatcgccatctctggc
ctctcctcgagcacctggtacagggccaatctgtacggggtgtaccggggagccctgtta
gagcccgtctttgcagacaccatcacagaggcagagccagaggtgcaggctctcctcgtg
tccgatgtcggccctgagagctttaagctggcctgggtggctgaagaggacgccttcgac
acctttgtcataatggtgagccaggtcgagctgggccgacccagagagctggtgctgggg
ggcgatgagcggagcacaaacatcacagatctcacagaggacaccgaatacgaaatccaa
atctttgggctctttttgggaagaccctccaagtctgtaaaggagggggtgataacagac
ctgggctcacccaagggtatccgcttctctgatgtcaccgacacgtccaccacggttcac
tgggtggtccccagggctcgggtggacagctacagggtcacgtatgtgccggctcatgga
ggtaatgcaaagacgctgaccgtggaaggctctgaggctcacactgtgctgtccaacctg
acgcccggggtcacctacgaggtcactgtggtctctgtcaagggtcaaagggagagtgag
cctggatcggacagcgtcaccacagctctggataagccccggggtctgactgcagtcaac
atcacggactctgaggctctgctcctctggcagccggccatcgctactgtggacggctac
gtcatcacctacagcgcagactcggtggctccagtgatggagcgtgtgtcaggaaatgtg
gtggagtttgatatgtcctccctgagcccggccactcactacactgtgaaggtgttcgct
gtgagggacctgtccaagagcgcagccaccaccacagagttcaccactgatgtggacgcc
cctcaggacctggcagccagtaacatccagacggagaacggcctgctgagctggaagccg
ccgcgcgccgacatcaccggatacatcctgagctttgagtctgtggacggcaccatccgg
gaggtggtcttgagtcccaatgcggtgtcctataacatggctcagctcagcgcctccaca
cagtactccgtcaagctgcaggccatcgctgggccgaagagaagccgagtcatcaccact
gtcttcaccaccactggcgtgctgtacaaatacccccgggactgctcccaggccctgctg
aatggggacacctcctcagacctgtacaccatctacctgggtggagatgagagccagccc
gtgcaggtgtactgcgacatggcgactgatggaggcggatggatcgttttcctccgcaga
cagagtgggagactggagtttttccgcaactggaagaattacacagcaggcttcggagac
atgaacgatgaattctggctgggcctgtctaacctgcataagatcacggttgggggtccg
tacgagctgcgagtggacctgagagataagggagagacggccttcgctcagtacgacaag
ttctccatctctgaaccccggagccgctacaaggtccatgtaggagggtacagcggaaca
gcaggcgactctatgacctaccaccacggccggccattctccacctacgaccatgacaac
gacatcgctgtcaccaactgtgccctgtcctataagggagccttctggtataagaactgc
caccgtgtcaacctcatgggacgatatggagacaacagtcacagcaagggggtgaactgg
ttccactggaagggccacgagcactcgatcgagttcgccgagatgaagatcaggccctcc
aacttcaggaacctggagggaaggaggaagcgatcttag
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integrated database retrieval system
