Pseudochaenichthys georgianus (South Georgia icefish): 117453040
Help
Entry
117453040 CDS
T09629
Symbol
smarcb1a
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1-A
KO
K11648
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Pathway
pgeo03082
ATP-dependent chromatin remodeling
pgeo03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
117453040 (smarcb1a)
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
117453040 (smarcb1a)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
pgeo01009
]
117453040 (smarcb1a)
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pgeo03021
]
117453040 (smarcb1a)
03036 Chromosome and associated proteins [BR:
pgeo03036
]
117453040 (smarcb1a)
Protein phosphatases and associated proteins [BR:
pgeo01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
117453040 (smarcb1a)
Transcription machinery [BR:
pgeo03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
117453040 (smarcb1a)
SWI/SNF complex
117453040 (smarcb1a)
Chromosome and associated proteins [BR:
pgeo03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
117453040 (smarcb1a)
PBAF complex
117453040 (smarcb1a)
SWI/SNF complex
117453040 (smarcb1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF5
INI1_DNA-bd
DUF1679
Motif
Other DBs
NCBI-GeneID:
117453040
NCBI-ProteinID:
XP_033947775
LinkDB
All DBs
Position
9:complement(9420568..9434836)
Genome browser
AA seq
373 aa
AA seq
DB search
MALSKTFGQKPVKFQLEEDGDFYMIGSEVGNYLRMFRGSLYKRYPSLWRKLASVEERKKI
VESSHDHGYTQLATSVTLLKASEVEEILEGNDEKYKAISISTEPPAYLREQKGKRNSQWV
PTLPNSSHHLDAVPCSTTINRSRSGRDKKRTFPLCFDDHDPAVIHENATQSEVLVPIRLD
MEIEGQKLRDAFTWNMNEKLMTPEMFAEILCDDLDLNPLAFVPAIASAIRQQIESYPTDS
ILEEQSDQRVIIKLNIHVGNISLVDQFEWDMSERENSPEKFALKLCSELGLGGEFVTTIA
YSIRGQLSWHQRTYAFSENPLPTVEIAIRNTGDADQWCPLLETLTDAEMEKKIRDQDRNT
RRMRRLANMAPAW
NT seq
1122 nt
NT seq
+upstream
nt +downstream
nt
atggcgcttagcaaaacgtttggacaaaaacctgttaaatttcagctcgaggaggatgga
gacttttatatgatcggatcggaggtgggaaactacctccgcatgttcagaggctccctg
tataaaagatacccgtcattatggagaaaactggcatcggtagaagagaggaagaagata
gtggagtcatcacacgatcacggctacactcagctggccaccagtgtgaccctgctgaag
gcttccgaggtggaggagatcctggaaggaaacgatgagaagtacaaagctatctccatc
agcactgagccccccgcctacctcagggagcagaagggaaagaggaacagtcagtgggtc
cccacactgcccaacagctcccaccacctggacgcagtgccctgctccaccaccatcaac
cgcagccggagtggccgcgacaagaaaaggaccttccccctgtgctttgacgaccacgat
ccagcagtgatccacgagaacgccactcagtctgaagtcctggttcccatccgcctggac
atggagatcgagggacagaaactcagagacgctttcacctggaacatgaacgaaaagctg
atgacgcccgagatgttcgctgagatcctctgcgacgacctggacctcaacccgctggcc
ttcgtccccgccatcgcctccgccatccgacagcagatcgagtcgtatcccacagacagc
atcctggaggagcagtcggaccagagggtgatcatcaagttgaacatccatgtggggaac
atctccctggtggaccagtttgagtgggacatgtccgagagggagaactctccggagaaa
ttcgccctgaagctgtgctccgagctgggcctgggcggagagtttgtcaccaccatcgcc
tacagcatccgcggtcagctaagctggcaccagaggacgtacgccttcagtgagaacccc
ctccccacagtggagatagccatcagaaacacaggtgatgccgaccagtggtgccccctg
ctggagaccctgacagacgcagagatggagaagaagatcagagatcaggacagaaacacc
aggcgaatgaggcgactggcgaacatggcgcctgcgtggtag
DBGET
integrated database retrieval system
