KEGG   Pseudochaenichthys georgianus (South Georgia icefish): 117453115
Entry
117453115         CDS       T09629                                 
Symbol
ercc8
Name
(RefSeq) DNA excision repair protein ERCC-8
  KO
K10570  DNA excision repair protein ERCC-8
Organism
pgeo  Pseudochaenichthys georgianus (South Georgia icefish)
Pathway
pgeo03420  Nucleotide excision repair
pgeo04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:pgeo00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    117453115 (ercc8)
  09124 Replication and repair
   03420 Nucleotide excision repair
    117453115 (ercc8)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:pgeo04121]
    117453115 (ercc8)
   03400 DNA repair and recombination proteins [BR:pgeo03400]
    117453115 (ercc8)
Ubiquitin system [BR:pgeo04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     117453115 (ercc8)
DNA repair and recombination proteins [BR:pgeo03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      117453115 (ercc8)
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_EML_2 WD40_MABP1-WDR62_2nd Beta-prop_TEP1_2nd EIF3I Beta-prop_RIG_2nd Beta-prop_CAF1B_HIR1 Beta-prop_EIPR1 Beta-prop_WDR75_1st Beta-prop_EML WDR55 Beta-prop_TEP1_C Beta-prop_WDR90_POC16_2nd NBCH_WD40 ANAPC4_WD40 WDR90_beta-prop_4th WD40_RFWD3 Beta-prop_WDR19_1st Beta-prop_RIG_1st WD40_MABP1-WDR62_1st WD_LRWD1 Beta-prop_WDR75_2nd Beta-prop_IFT122_1st Beta-prop_SCAP Beta-prop_Vps41 Beta-prop_IFT140_1st Beta-prop_HPS5
Other DBs
NCBI-GeneID: 117453115
NCBI-ProteinID: XP_033947883
LinkDB
Position
9:25842278..25873380
AA seq 401 aa
MLGFLTARQAGVDDPLRLRRAESTRRVLSLKLNPDRDVDRIHGNGINTIDIEAVEGRYML
SGGADGVIVIYDLENYSRKLQYTCKAVCTVGRSSRYVHKFSVETVQWYPYDTGMFVSSSF
DKTMKVWDTETLKPAEVFEFEGNVYSHHLSPIARKHSLIAVGTTDPKIQLCDLKSGSRIH
VLQGHRAEILSVRWSPRYDHILATASADSKVKVWDVRRASGSLFTLDQHNGDKSKASSEA
VNMAHNGRVNGLCFTGDGLYLLTTGTDDRMRLWNSATGENTLVNYGKVCNESRKRLQFTV
SRGCSPEFVFVPCGSSVAVYALHTGELVTMLRGHYNNVDCCEFHPDYQELYTGGKDCNIL
AWVPAPRAPDVEEESKSANQAAADQSSVNPAFQDAWSSDED
NT seq 1206 nt   +upstreamnt  +downstreamnt
atgttggggtttcttacagccaggcaggctggtgtggatgatcctctgcgactgaggcgt
gcagagtcaacgcggagggtcctgagtctgaagttgaatcctgacagagatgttgataga
atccatggaaacggcatcaacaccattgacattgaagcagtagagggcagatacatgttg
tctggcggcgcagatggagtgattgtcatctatgacctggagaactacagtaggaaacta
cagtacacctgcaaggcagtttgcactgtaggcaggtcgagtcggtatgtccacaaattc
agcgtagagacagtccagtggtatccttatgacacgggcatgtttgtctcgagttccttt
gacaagaccatgaaggtctgggacactgagacactgaagcctgcagaagtctttgagttt
gagggcaatgtctacagccaccacctctcccccatcgccaggaagcacagtctcattgca
gttggcaccacagaccctaaaatccagctgtgtgacctgaagtctggttcacggattcat
gttcttcagggccacagagcagagatcctgtccgtgcggtggtcgccccgatacgatcac
atcttagccactgccagtgcagacagcaaagtgaaagtatgggatgtgcgtcgggcttct
ggtagtctcttcactctggaccaacacaatggagacaaatcaaaagcatcctctgaggca
gtgaacatggcgcataatggcagagtgaatggcctgtgcttcactggcgatggcctctac
ctcctcaccactggaactgatgaccgtatgcgactatggaatagtgcaactggggaaaac
accctggtaaattacgggaaggtctgcaacgagagccgtaaaaggcttcagttcacagtt
tcccgtggctgcagcccagagtttgtgtttgtgccctgcggcagctcggtggctgtgtat
gccctccacacaggagagctggtcaccatgctcagagggcactacaataacgtggactgc
tgcgagtttcacccagactaccaggagctctatactggaggtaaagactgtaacatcctg
gcatgggttcctgcccctcgtgccccagatgtggaagaagagtcaaaaagtgcaaatcag
gctgctgctgaccagtcctcagtgaacccggcctttcaggatgcatggagtagtgatgaa
gactaa

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