Pseudochaenichthys georgianus (South Georgia icefish): 117453348
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Entry
117453348 CDS
T09629
Symbol
pcdh18b
Name
(RefSeq) protocadherin-18b isoform X1
KO
K16499
protocadherin delta 2
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
pgeo04515
]
117453348 (pcdh18b)
Cell adhesion molecules [BR:
pgeo04515
]
Cadherins
Protocadherins
117453348 (pcdh18b)
BRITE hierarchy
Motif
Pfam:
Cadherin
Cadherin_2
PAG
Cadherin_C_2
TMEM154
BBS1
Motif
Other DBs
NCBI-GeneID:
117453348
NCBI-ProteinID:
XP_033948051
EnsemblRapid:
ENSPGEG00000016784
LinkDB
All DBs
Position
10:complement(39061278..39071017)
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AA seq
1234 aa
AA seq
DB search
MRGTMKQTKGIIFSSALFKLLLLVAITRGATGKTLKYKVYEEQRVGTVIARLKEDVAGVL
SKLPGSLTFRFRAMQRGSTPFLSVREEDGEISIGTKIDREKLCEKNVNCSIEFDVVTLPT
EYLQLFHVEVEVLDINDNSPHFSRAIVPIEISESASVGTRIPLDGAVDADVGENSLNTYS
LTPNNFFKIEVRTRTDGAKYAELVVIRDLDREVQQNYQLQLTASDNGVPPKSGSTLVKIS
ISDSNDNSPVFDEQAYMINFMENSPLGTLIIDLNATDPDEGTNGKIVYGFSSHVSPKILE
TFKINPESGHITLIKKVDFESTASYELDVQAQDLGPNSIPGLCKIVVKVVDVNDNKPEIN
INLMTPGKEEVAYISEGAPVDTFIALVRVDDSDAGLNGEVVCRLHGHGHFRLQKTYEKNY
MILTNVSLDREKRSEYSLTVIAEDRGSPSLSTIKHFTVQVLDENDNPPRFEKSRYEVFKS
ENNSPGAYLMTLVASDPDLGTNGQITYSIVDALVQGSPISTYVTIDPSNGAIYALRSFDH
EDVSRIAFTVQARDGGNPVLSTNTTVLLTVLDENDNPPIIHSPSLRNHTAELSVWKYASP
GQLITVLKVTDRDTGTNGEISCAIVGGNEDRLFVMDARRCELRTNASLEQAPREVMEIRV
EVQDRGTIRLATGALFRLSLQENMDILPPLYPTGSSQAQLDLSLIVIISLGAVCALLLIV
MVMFATARCNREKKDPRHNYNCRVAESSYQNHPKKPARQIHKADITLVPTINGTLPVRAH
PRSPSASPAPDRGTLGSRQSHHSRQSLNSLVTISSNHVAENFALELAHATPPVEQVSQLL
SMLHQGQYQPRPSFRGNKYTRSYRYALNEMDKFSLKDSGRGDSEAGDSDYEPGRESPMDR
LLGEGFTEIYAPDGQHRTHAAMRLCTEECRVLGHSDQCWMPPLASPASSSDYRSNLYIPG
EESHQACDPSQEKSPQPCTDTGPTRNQSFSTFGKDLGGEEDREEVEGGACVGEAGDEDLC
GTTSLLSEMSSVFQRLLPQGLDSYVQVNENQKGTGLSGVGVPMTGSLDRRRGHLPGKPNP
SVHQQGVAAWAANTHFQNPGSSIGPSGPHQGGSYHTLKPSTKLSSQSGHKGTQAPKNSPQ
NSGHTPKPHSSPLLTALVSPTLVHPSPAPVAVALCPSSKWLPAMEEIPENYEEDDFDSGR
GPLQGRRCDSRHELVDASELVAEINKLLQDVRQS
NT seq
3705 nt
NT seq
+upstream
nt +downstream
nt
atgaggggaacaatgaaacaaaccaaaggaattattttctcctcggcactgttcaagctt
ctgcttttggtcgcgattacgcgcggtgccaccggtaagactttgaaatataaagtttac
gaggagcagagagtggggacggtgattgcccggttaaaggaagatgtagccggggtttta
tccaaattaccgggttccctgacctttcggttccgcgcaatgcaacgaggcagtacgccg
ttcctctctgtccgggaggaggacggggagatcagcattggcaccaaaatcgaccgtgag
aagctttgtgagaaaaatgtgaactgctcgattgaatttgatgtggtcacactccccacg
gagtacctgcagctgttccatgtggaagtggaggtgctggacatcaacgacaattccccc
cacttctcacgcgccattgtccctattgagatctcggaaagcgcatcggtggggacccgc
atcccgctggacggcgcagtggatgcggacgtcggggaaaactccctgaacacatattcc
cttacacccaataacttctttaagatcgaggtgaggacacggacggatggggccaagtac
gcagagctggtggtgatcagggacctggaccgggaggtacaacaaaactaccagctccag
ctaacggcctccgataatggtgttcctccaaagtctggctccactttggtcaagatcagc
atctcggattccaacgacaacagcccagtctttgatgagcaggcttatatgatcaatttt
atggaaaactctcccctagggactctaatcattgatttaaacgccacagatccagatgag
ggcactaatgggaaaatagtatatgggttcagcagccatgtctcaccaaagatcttggaa
acctttaagataaacccagaaagtggccacattacccttattaaaaaagtggactttgaa
agcactgcttcctatgagctggatgttcaagctcaggacctgggccctaattccatccct
ggactttgcaaaattgttgttaaagtggttgatgtaaatgacaacaaaccagagataaac
atcaacctgatgacgcctggcaaagaggaagtggcctacatttcagagggggccccagtg
gacaccttcatagctctggttcgtgttgatgacagcgacgctgggctgaatggggaggtg
gtgtgccggctgcacggccatggacacttcagactccagaagacctacgagaagaactac
atgatcctcactaatgtatcgctggatcgggagaagaggtcagagtacagtctgactgtc
atagcagaggaccggggctcccccagcctctccaccatcaaacacttcaccgttcaggtg
ttggatgaaaacgacaatcccccacgttttgaaaagagccgctacgaggtctttaaatca
gaaaacaactctcctggagcatacctcatgaccctggtggcctcagatccagatctgggc
accaatggccagattacctacagcatcgtagacgctctggttcaggggagccccatctcc
acctatgtcaccattgacccttctaatggcgccatctatgccttacgcagttttgaccat
gaagacgtcagtcggatcgccttcaccgttcaggcccgtgacggggggaacccagtgctg
tccaccaacaccacggtcctcttgactgttctggatgaaaacgacaacccgcccataatc
cactccccctccctccggaatcacaccgccgagctgtccgtgtggaagtatgcatcacct
ggtcagctgatcacggtgctcaaagtcacagaccgcgacaccggcaccaacggagagatt
agctgtgccatcgtcggtggcaacgaggacaggctctttgtgatggacgccaggcgctgt
gagctcagaaccaatgccagcctggaacaggctccacgggaagtgatggaaatcagggtg
gaggtgcaagacaggggcaccatccgcctggccacaggggccctcttcaggctgtcgctg
caggagaacatggacatcctgccccccctctaccccacaggctccagtcaggcccagctg
gatctctccctcatcgtcatcatctctctgggcgctgtttgtgctctgctactcatcgtc
atggtgatgtttgccactgctcgctgcaaccgtgagaagaaagatccaagacacaactac
aactgccgtgtggctgagagcagctaccagaaccaccccaagaagcccgccaggcagatc
cacaaggcggacatcaccctggtccccacgatcaatgggactctgcctgtgagagcccac
cctcgctccccatcagcctcccccgctcccgacagaggcaccctggggagtaggcagagc
caccacagccgccagtccctcaacagcctggtcaccatctcctccaatcacgtggcggag
aactttgccctagagctggcccacgccacgcctcctgtagagcaagtctcacagcttctg
tccatgctccatcagggccagtaccagccacgacccagcttcagaggcaacaaatacacc
aggagctacagatacgcgctgaatgagatggataagttcagtctgaaggacagcgggcgg
ggggacagtgaggcgggggacagcgactacgagcctggccgggagtcccccatggacagg
ctccttggtgagggctttactgagatatatgcccctgatggccagcacagaacgcatgca
gctatgaggctgtgcacagaagagtgccgtgtgctgggtcactcagatcagtgctggatg
ccccccctggcctcccccgcctcgtcctctgactaccgcagcaacctctacatccccggg
gaagaatcccaccaagcatgcgacccctcccaggaaaagagcccgcagccctgcaccgac
accggccccacccggaaccaaagcttctccaccttcggcaaggacctggggggtgaggaa
gacagagaagaggtggaggggggggcttgtgtgggcgaggccggagatgaagacttgtgt
gggaccacctctctgctgtcggagatgagcagtgtgttccagcggctgttaccccagggg
ctggattcctacgtccaggtaaacgagaaccagaaagggactggtctcagcggggtgggg
gtaccgatgactggatctttagaccgcaggaggggccatcttcctggcaagcccaacccc
tccgtccaccagcagggcgtagcagcctgggccgccaacacccacttccagaacccgggc
agcagcattgggccatctggcccccaccaggggggaagctaccacaccctcaaacccagc
accaagctcagctcccagagcggccacaagggcacacaggcccccaaaaacagcccccag
aacagtggccatacacccaaaccccatagcagccccctcctcacggcactggtcagcccc
actctggtgcacccctcacccgccccggtggcggtggcgctctgcccctcctccaaatgg
ctcccggccatggaggagatcccggagaactacgaggaggacgactttgactcggggcgc
ggccccctgcagggcagacgctgcgacagcaggcacgagctggtggacgccagcgagcta
gtggcagagatcaacaaactcctgcaggacgtccggcagagctag
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