Pseudochaenichthys georgianus (South Georgia icefish): 117453520
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Entry
117453520 CDS
T09629
Name
(RefSeq) protocadherin-1-like isoform X1
KO
K16498
protocadherin delta 1
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Pathway
pgeo03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
117453520
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
pgeo01009
]
117453520
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
pgeo04515
]
117453520
Protein phosphatases and associated proteins [BR:
pgeo01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
117453520
Cell adhesion molecules [BR:
pgeo04515
]
Cadherins
Protocadherins
117453520
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_CELSR2_9th
Cadherin_2
Fibulin_C
PDGLE
Motif
Other DBs
NCBI-GeneID:
117453520
NCBI-ProteinID:
XP_033948233
LinkDB
All DBs
Position
10:complement(4123366..4346179)
Genome browser
AA seq
1217 aa
AA seq
DB search
MAALRREVLLFFSVVLLVSCGASPTDILYRVPEEQPPNTLIGSLASDQGLPDTGHLYKLE
VGSPYLRVDGKSGDIYTTEIPIDRETLKDCRNLFEGDKCFLEFEVSITDMVNGLGAGPRL
IEGRIEVLDINDNTPQFSSPILTLSIPENTHIGALFSIPMATDRDSGHNGVAEYTLTTGP
DADQLFSLQVALDSDEKLPQLVVMGNLDREIKDSYDLNIRVIDGGKPPRASSALLRVTVT
DQNDNAPKFERSHYEAELQENSPQGHSVLQVRANDADTGTNGEIDYSLHQASEAVQRLLR
IDRSTGVIYVKGLVDREEESFLKFFVFAKDRGPNSKSSKVLVIINVRDQNDNSPAIEIRG
IGLVTHHNGVANISEDMPIGTPVALVQVSDRDEGENAVVTCVVAGDVPFQLRPASESSND
RKRKYFLQTTTLLDYENIKDYRIEIVAVDSGNPALSSTNSLKVQVTDINDNTPTFSPSRV
EVDFAEGNQPGDKVLVITAADADSGSNEELVYSIIDLHATRLFEMQPTSGEIRVKNMLDR
EETEQYEFRVAAADKGIPSKTGTAIVVINVLDRNDNDPKFMLSGYSFSVIENMLPLNPVG
VVTVTDADKGENARVRLYVEPDNGKFIIQNGTGTILSSISFDHEKESTYSFRLKAVDAGD
PPRSSYVGVTINVLDENDNAPYVTKPANSSYKYMSPVTPLDTRVEVVEAEDIDSGPNAEL
VYTITGGNPYDLFYISPNSGEITLVEEFTGKHNGLHRLVVKVSDKGKPPRHTTALVHVFV
NDTKSNVSLIEALVGHSLYTPLDRDIAGDPNYALAQRSNILYGSLAGIAGVIMVIVAVVV
IRHRLQKDTKSGYQAGKKESKDLYAPKQGPKNGKGKKSKKGKAPKPAKPVEEEEEASLQK
GLKFNLINENVNDSPRIHLPLNYPPGSPDLGRHYRSNSPLPSIMLQPQSPSASKKHQAVQ
DLPATNTFVGTGDNTSTGSDQYSDYSYKANPPKYSSKQSQPPHRRVTFSTANQAQDLQDL
QDPSQHSYYDSGLEESETPSSKSSSGTRVGPLALPEDHYERTTPDGSIGEIEHPENDLRP
LPDVAMTGNCTHECTEFGHSDSCWMPGGEPSPTRKVSLNAPSKVSTFVPYQEMEGQEQLM
ANGSPKPLTEDRGTGTGGSGGGSKVANMRFMTPYSSAYSGDPSGKDCEREDIPLSQAVEF
HSATTPTGQTSKREIYL
NT seq
3654 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgttgaggcgggaagttctgctcttcttttcggtcgtcctgctggtttcctgc
ggcgcctcgcccaccgacatcctgtaccgagttcctgaagagcagccgcccaacacgctg
atcggcagcctggcgtcggaccagggtcttcccgacaccggacacctttacaaactggaa
gtgggatcgccgtacctacgagtggacggaaaatccggcgacatctacaccaccgagatc
cccatcgaccgcgagacgttgaaggactgccgcaacctgttcgaaggagacaaatgcttc
ctggagttcgaggtgtcgatcacagatatggtgaacggtctcggagcgggaccacggctg
atcgaggggcgcatcgaggttctggacatcaacgataacacgccgcagttctcctcgccc
atcctcaccctctccatccccgagaacacacacatcggcgccctcttctccatccccatg
gccaccgatagagactctggacacaacggggtagcggagtatactctgaccaccggaccg
gacgcagaccagctcttcagccttcaggtggctttggattcggatgagaagttaccacag
ctggtggtcatgggtaatctggaccgcgagatcaaggactcgtacgacctgaacatccgc
gtgattgacggagggaaaccgccgagggcgagcagtgccttgttgagggtaaccgtcacc
gaccagaacgacaacgccccaaagttcgagaggagtcactacgaggcggagcttcaggag
aacagcccccagggacactcagtgctgcaggtcagagcaaacgatgcagacaccggaacc
aacggcgagattgactacagcctccatcaggcatccgaggcagtccagaggcttctgcgg
attgaccggtctacgggcgtcatctacgtcaaggggctggtggaccgcgaggaggaaagc
ttcctcaagttctttgtgttcgccaaagatcgcgggcccaactccaagagctccaaagtc
ctggtgatcatcaacgtcagggaccagaacgacaactcccctgccatcgagatccgcggt
atcggtttggtgacgcaccacaacggggtggccaacatctctgaggacatgcccatcggc
acgcccgtggcgttggtccaggtgtcggaccgcgacgagggggaaaatgcagtggtgacg
tgcgtggttgccggtgatgtcccctttcagctccgacctgcaagcgagtcctccaacgac
cggaagaggaagtacttcctgcagacaactaccttgctggattatgagaatatcaaggat
tacaggattgaaattgtcgccgtggattctggaaaccctgccctgtccagcaccaactcc
ctcaaagtacaggtcacagacattaatgacaacacgccgaccttttccccttcacgagtc
gaggtggactttgcagagggcaaccagccaggcgacaaggtgctggtcatcacggcggca
gatgcagacagcggctctaacgaagagctggtctacagcatcatcgacctccatgccacc
aggctctttgaaatgcaacccacctccggagagatccgcgtgaagaacatgctggatcgg
gaagagacggagcagtatgagtttcgagtggcggcagctgacaagggcattcctagcaaa
actggcactgctatcgtggtgattaatgttctggaccgcaatgacaatgacccaaagttc
atgctaagcggctacagcttctccgtcattgagaacatgctgccactgaaccctgtcggt
gttgtgaccgtcactgatgcagacaagggtgagaacgcccgggtgaggctgtatgtggaa
ccggacaatggtaaattcatcatccagaacggcacgggaaccatcctgtccagcatatcc
ttcgaccatgagaaggagagcacctactccttccggctgaaggctgtggatgccggtgac
ccgcctcgatcctcctatgtcggggtgacaatcaacgtcctggacgagaacgacaatgcg
ccctacgtcaccaaaccagctaactcctcctacaagtacatgtcacccgtcaccccgctt
gacacccgtgtggaggtagtagaggctgaagacattgactccggacccaatgctgagcta
gtctacaccatcacaggcggcaacccgtacgacctgttctacatctcgcccaacagcgga
gagataacgctggtggaggagttcaccggcaaacacaacgggcttcaccgcctggtggtg
aaagtcagcgataaaggcaaacctcctcgccacaccaccgccttagtccacgttttcgtc
aatgacaccaagtccaatgtgtccctcatcgaggcactcgttggacacagtctctacacc
cctctggacagggacattgccggagatcccaactacgccctcgctcagcgcagcaacatc
ctgtatggcagcctcgcgggtattgctggtgtgattatggtcattgtcgcggtggtggtc
atcagacaccgactgcagaaggacactaagagtggctaccaggccggcaagaaggagagc
aaggacctttacgctcccaagcaaggccccaaaaatggcaaagggaagaagagcaaaaag
ggaaaagctcccaaaccggcgaagccagtggaggaggaggaggaggccagcctgcagaaa
ggcctcaagttcaacctcatcaacgaaaatgtaaacgatagtcccagaatccacttgccc
cttaactacccaccgggaagccccgatctgggacgtcactaccgctctaactcccctcta
ccctccatcatgctgcagccccagtcgccctccgcctccaagaagcaccaggctgttcag
gacctccccgccaccaacaccttcgtgggaacgggcgacaacacctcaacaggctccgac
caatattcggattacagctacaaggccaacccccccaaatacagcagcaaacagtcacag
cctccccaccgccgagtgactttctccacggccaatcaggcgcaggacctgcaggacctg
caggacccgtcccagcacagctactacgacagcggcctggaggagtcggagacgcccagc
tccaagtcctcctcggggacccgggtcggccccctggcgctgcccgaggaccactacgag
agaaccacgcccgacggcagcatcggagagatagagcacccggagaacgacctcaggcct
ctccccgacgtggcgatgaccggtaactgcacccacgaatgcaccgagttcggccactct
gactcctgctggatgccgggcggcgagccttcccccactcgcaaggtgtccctgaacgcc
ccctccaaggtttccaccttcgtgccttaccaggagatggaggggcaggagcagctgatg
gccaacggcagccccaagcctctgacggaggaccgcgggacgggtactggaggttctgga
ggtggatccaaagtggccaacatgcggttcatgaccccctacagcagtgcctactctgga
gacccgtccggaaaagactgtgagcgcgaagacatcccgttgagccaggcggtcgagttt
cactccgccacgactccaaccggccagacctccaagagggaaatctacctgtga
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