Pseudochaenichthys georgianus (South Georgia icefish): 117453886
Help
Entry
117453886 CDS
T09629
Symbol
polr1a
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1 isoform X1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Pathway
pgeo03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
117453886 (polr1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pgeo03021
]
117453886 (polr1a)
Enzymes [BR:
pgeo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
117453886 (polr1a)
Transcription machinery [BR:
pgeo03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
117453886 (polr1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
Nop14
Motif
Other DBs
NCBI-GeneID:
117453886
NCBI-ProteinID:
XP_033948813
LinkDB
All DBs
Position
10:35298478..35403578
Genome browser
AA seq
1697 aa
AA seq
DB search
MLFSKEAPWRRLEGLSFGMYSAEEIRKLSVKTITNFRFLDAVGNVAPNSLYDLALGPADN
KEVCSTCCQDFNNCPGHMGHVELPLPVYNPLFFDKLYLLIRGSCLSCNMLLCPRAAIHLL
LSQLRLLDHGNMQEVYQVEQVLSQHLEENPKATGDEIQLVLKQFTDSIVGVNTEGSANTK
PIKHLVEKKYSLINDFWRIHMKSRKCPYCSTGKFTVRREHNSKLIVTMPSGAQTIGNTDE
DLAGKRVYLTASTAREHSNKLWAKEGFFLKCLFSGMEEGKLSLAAEEGFYSDHFFLELLV
VPPCRYRPINRIGDQMFTNGQTVNMQAVMKDCAIIRKLLALIAGEKIDKEEEAPEEMDQA
FLTGIPGLTVTDKLYNIWVRLQTHVNIVFDSDMDKMMSEKYPGIRQILEKKDGLFRKHMM
GKRVDFAARSVICPDMYIGTNEIGIPMVFATKLTYPQPVTPFNVKELRQAVLNGPNVHPG
ASMVINEDGRRTILSPTSLVQREAVAKQLLTPCDGPHKIPIKIVNRHIKNGDVMLLNRQP
TLHRPSIQAHCARILPGEKVLRLHYANCKAYNADFDGDEMNAHFPQSELARAEAYTLVST
DQQYLVPKDGTPLAGLIQDHMVSGTRMTIRGCFFTRVQYIELVYRGLTDKPGRVKLLPPA
IIKPQQLWTGKQVVSTLLLNVIPQNAVPLNLVGKSKIPSKAWIQVPPRAAPGYKPDSMCD
SQVVIRQGELLVGVLDKAHYGSSSYGLVHCCYELYGGATSGKLLSCLARLFTAYLQLYRG
FTLGVEDILVKPSANRQRKKIIQESLKIGTKALQAAFNLPPNVDHAEAQSRWQDAHLNPD
QKDFSTADHKFKEVANQVNNEINKVCMPVGLHTSFPDNNLQLMVQSGAKGSTVNTMQISC
LLGQIELEGRRPPLMPSGKSLPCFQPYDPAPGAGGFVSGRFLTGIKPQEFFFHCMAGREG
LVDTAVKTSRSGYLQRCVIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLDIPKTPFLQE
RQFPFIEDNYEVIRRLQGLDEVLPRLDLHSAARHFASIQRWKAKREVACPRKGAFLLYSQ
KKLAHLEQTEQGGEPDVCGRKASILQLIQQWQALDDSSRSKYSRKSSRCPEPSLGQLRPD
ICFGSVSENFHSITEKYLQSEGRRKQDSIDTNSLRQLLHYKWQRSLCDPGEAVGLLAAQS
IGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASSNIKTPMMRVPVLNTKRALKRA
KTLRKKLTRVCLAEVLQKVDVVETLRIEDHLKLRTFKVTFNFLPPDRYCEDKLLTPHQIL
YFMENRFFRLLLEAIKKRSAKLASIAVETRKATLRDKDNDAEGTADNAGLDDAEVEEEQE
IVDDQANEGDADASDAKRKDKQQEEVDYESEEEDKGEEDKEDQDQDEEQEEGEEGEEEAE
GESEESQPESGRVTSERRKKKISKQLEEEEEDPLDLMRINSVLQSNPAIERYSYDAESEL
WCEVDLVLPVSKVHFDLTSVLSTLAQNAVIMETKGLTRCLLSEVTTKTGEKETLFNTEGI
NMHELFKHSDILDINRLYSNQVHAMAQTYGIEVALKVIEKEIKDVFAVYGIEVDPRHLSL
VADYMCFEGIYKPLNRHAIRSNSSPLQQMTFETSFKFLKQATMLGSHDELVSPSACLVAG
KVVKGGTGLFDLKQPMQ
NT seq
5094 nt
NT seq
+upstream
nt +downstream
nt
atgttgtttagtaaagaagcgccatggcggcgtctggaaggcctgtcgtttggtatgtac
tcagctgaagagataaggaagctgagtgtgaagacgatcactaacttcaggttcctggat
gccgttgggaatgtggccccaaacagcctgtatgatctggccctgggaccagcagacaac
aaagaggtgtgttcaacctgctgtcaggacttcaacaactgtcccggtcacatggggcat
gtggagctacctctacctgtttacaacccgctgttctttgataaactgtacctgctgatc
cgtggctcgtgtctctcatgtaacatgctgctgtgccctcgcgccgccattcacctgctg
ctcagccagctgcggctgctggaccacgggaacatgcaggaggtgtaccaggtggagcag
gtcctcagccagcacctggaggagaaccccaaagccacaggagatgagatccagctggtg
ctgaagcagtttacagacagcatagtcggagtaaacactgaaggctcagcgaacaccaaa
ccgatcaaacaccttgttgaaaagaagtacagtttgatcaatgacttctggaggatccat
atgaaatctaggaagtgcccttactgcagtactggcaagtttacagtgcgccgtgaacac
aacagtaagctgattgtcacaatgccatcgggagcacagaccattggcaacactgatgag
gatctggcgggaaagagagtgtacctgacggcaagtactgccagagaacacagcaacaaa
ctgtgggcgaaagaaggtttcttcttgaagtgcctgttctcaggaatggaggaggggaag
ctgtcactggcagcagaggaaggtttctattctgaccacttcttcctcgagctgctggtg
gtcccaccctgcaggtatcgtccaatcaatcgcatcggtgaccagatgttcaccaacggt
cagacagtcaacatgcaggcggtaatgaaggactgtgcaatcatccggaaactgctggct
ctcattgcgggggagaagattgataaggaggaagaggctccagaggagatggaccaagcg
tttctgacggggatccccgggctgacggtcacagataaactctacaacatctgggtgcgg
ctgcagacacacgtcaacatcgtctttgacagcgacatggacaaaatgatgtcggagaaa
taccccggaatcagacagatcctggagaagaaggacggactcttccggaaacacatgatg
ggcaaacgagtggacttcgctgcacgatcagtcatctgtcctgacatgtacatcgggacc
aacgagatcggcatccctatggtgtttgccaccaagctgacgtacccccagcccgtcacc
ccctttaacgtgaaggagctccgccaggccgttctcaacgggcccaacgtccaccccggg
gcgtccatggtgataaacgaggacggccggagaaccatcctgtcccctaccagcctcgtg
cagagagaagccgtcgccaagcaactgctgacgccctgcgacgggccgcataagatcccc
atcaagatcgtgaatcgtcacattaagaacggagatgtgatgttactgaaccgacagccc
actctgcacagaccctccatacaagcccactgtgctcgcatcttaccgggagagaaggtt
ctgaggcttcactacgccaactgcaaagcatacaacgccgactttgacggcgacgaaatg
aacgctcacttccctcagagcgagctggcccgggccgaggcctacacgctggtcagcacc
gatcagcagtacctcgtccccaaggacggtacacctttagcaggtctgatccaggaccac
atggtgtcgggtacgaggatgacgatacgtggctgtttcttcaccagagtgcagtacata
gagctggtatacagaggactgactgacaaaccaggcagagtcaaactactgccacccgcc
attataaaaccacagcagctatggacagggaagcaggtggtttccacactcctgctgaat
gttatcccacagaacgccgtgcctctcaatctggttggaaaatccaaaatccccagcaaa
gcgtggatccaagtcccaccccgagctgccccaggatacaaacctgacagcatgtgtgac
tcacaggtggtgatccgtcagggcgagctgttggtgggggttctggacaaagctcactac
ggctcctcatcctacggtctggtccactgctgctacgagctttacggaggggcgaccagc
ggcaagctgctcagctgccttgctcgactcttcactgcgtacctgcagctgtacagaggt
tttactctgggtgtggaagacatccttgtgaaaccgagcgccaacaggcagaggaaaaaa
atcattcaagaatcactgaagattggcaccaaagccctgcaggcagccttcaacctgccc
cccaacgtggaccacgctgaggctcagagccgctggcaggacgctcacctcaaccccgac
cagaaagacttcagcacggccgaccacaagttcaaagaagtggctaaccaagtgaacaat
gaaattaacaaggtgtgcatgccagtgggactccacacgtctttcccagacaacaacctc
caactgatggtccaatcaggagccaagggctctactgtaaacaccatgcagatttcatgt
ttactaggccagattgagttggagggccgtagacctccattgatgccttctgggaaatct
ttgccgtgcttccagccctatgaccctgcccccggcgcagggggctttgtttccggaagg
ttcctcactggaatcaaaccacaggagtttttcttccactgtatggccggcagagaggga
ctggtggacacagctgtgaaaacatctcgatcaggatacctgcagagatgtgtcataaag
catctggagggtttggtggtgcagtatgatctgacggtgagggacagcgatggctcggtg
gtgcagttcctgtacggtgaagacggactggacatccctaagactccgttcttgcaggag
agacagttccccttcatagaggacaactacgaggtgatcaggaggctgcaggggctggac
gaggtgttgccccgcctggaccttcactctgccgctcgacacttcgcctccatccagcgc
tggaaggccaagagagaggtggcttgtccacgcaaaggagcattcctgctgtattctcaa
aagaagttggcccatctggagcagacggaacaaggaggagaaccagatgtctgcggccga
aaggcttctatactacagctcatacagcagtggcaggctctggatgattccagcagatcc
aagtacagcaggaagtcctcccgctgccccgagccctctctgggccagttacggcccgac
atctgcttcggatcggtctctgaaaacttccacagcatcacagagaaatacctgcagagc
gaaggaaggcgaaaacaggacagcatcgacacaaacagcctccgtcagctgctgcactac
aagtggcagcgctcgctgtgtgacccgggtgaagcagtgggtctgcttgcagctcagtct
ataggggagccctccacccagatgaccctcaacaccttccactttgccggcagaggagag
atgaacgtgactctgggaatccctcgactgagggagatcctgatggtggccagctccaac
attaagactcccatgatgagagttcctgtgctaaacaccaagagagccttgaagagagcc
aagacgctgcgcaagaaactcaccagagtctgcctggctgaggtgctgcagaaggtggat
gtggtggagacgctgcggattgaagatcacctcaaactgcggactttcaaagtcaccttc
aactttctgcctcctgaccgctactgtgaagataagctgctcacaccacaccagatcctg
tacttcatggaaaataggtttttccgtctcctgctggaagccattaagaagcgcagcgcc
aagcttgcctccatcgccgtggaaacaaggaaggccactctccgagataaggacaacgat
gcagagggcaccgctgacaacgcagggctagacgacgcggaggtagaagaggagcaagag
attgttgacgaccaggccaacgaaggagacgccgacgcatcggacgccaaacggaaagac
aaacagcaagaggaggtggactatgagagtgaggaagaagacaaaggcgaggaggataaa
gaggaccaggaccaggatgaggagcaggaagagggggaggagggggaggaagaggcagaa
ggtgagtcggaggagtcccagcccgaatctggtagagtgacatcagagaggaggaagaaa
aaaatatcaaaacaacttgaagaggaagaagaggaccccttggatctgatgaggattaac
tctgttctgcagtccaacccggccatcgagagatacagctacgatgctgagagcgagctg
tggtgtgaggtggacctggtgctgccggtgagcaaggtgcactttgacctcacttcagtc
ctgtcaacactggctcagaacgccgtcatcatggaaaccaaaggcctgacgcgctgcctg
cttagtgaagtcaccacgaagactggagagaaagagacgctcttcaacacggaaggcatc
aacatgcacgagctgttcaagcacagcgatatcttggacatcaacagactctactccaat
caggtccacgccatggctcagacctacgggatcgaagtggctctgaaggtcatagagaag
gagatcaaagacgtctttgctgtctatggtatcgaggtggacccccggcatctgtcactg
gtggcagattacatgtgttttgaaggaatatacaagccgttaaaccggcacgccatccgc
tccaactcctcccctctgcagcagatgactttcgagaccagcttcaaattcctcaaacag
gctaccatgctggggtcacatgatgagctggtgtcaccctctgcctgcctggtggcgggg
aaggtagtcaaaggtggaaccggactgtttgatctcaaacaacctatgcagtga
DBGET
integrated database retrieval system
