Pseudochaenichthys georgianus (South Georgia icefish): 117454315
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Entry
117454315 CDS
T09629
Symbol
vimr2
Name
(RefSeq) vimentin isoform X1
KO
K05640
glial fibrillary acidic protein
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pgeo04131
]
117454315 (vimr2)
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
pgeo04812
]
117454315 (vimr2)
Membrane trafficking [BR:
pgeo04131
]
Autophagy
Chaperone mediated autophagy (CMA)
Other CMA associated proteins
117454315 (vimr2)
Cytoskeleton proteins [BR:
pgeo04812
]
Eukaryotic cytoskeleton proteins
Intermediate filaments
Intermediate filaments
Type III
117454315 (vimr2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Filament
ATG16
TPR_MLP1_2
DivIC
BBP1_C
DUF7801
FAP206
Motif
Other DBs
NCBI-GeneID:
117454315
NCBI-ProteinID:
XP_033949391
LinkDB
All DBs
Position
10:14988142..15004950
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AA seq
376 aa
AA seq
DB search
MTPQDPSFPVFGTLCPPLRGASIDECDCDNLDFVAAKALNKEGLSRFVQDRNVIGSLNDR
LVRVIELAHCFEEENESLECQIVDLEEQLSRRQASSSSSSVVLPHFSLDAVVERLRMERV
TCCCWDEILCDTEERQKELERLVTEYEKAAQQRILLLQDRQDVAEDVDAVTAECLALREQ
VAIYEEQLANMEAQHKTAVESMLEPDEGTTGAMRAITFGVPDITAALDVKEYYCQLAESL
QFECGAASSAVVPRGDGKQLQVGGAAGSKVKDLSKMRDVSEVKKLIAELQKELAELEKCN
EELEDEVEMKKAAYMDEIAELEGTLDEMRQQEEDFQVQMKEQCEDYKELLSEKMAREMEI
TAYRSLLEEEECLCGQ
NT seq
1131 nt
NT seq
+upstream
nt +downstream
nt
atgaccccccaggatccttcatttccagtctttggtactttgtgtcctcctctcaggggg
gcctccattgatgagtgtgactgtgacaacttagactttgtagctgcgaaggcgctcaac
aaagagggtctgagccggtttgtccaggacagaaacgtcatcggttctctgaacgaccgc
ctggtccgggttattgagctggctcattgttttgaggaggagaacgagtctcttgaatgt
cagatagttgatctggaggagcagctgagcaggcggcaggcctccagcagctcctcctct
gtggtcctgcctcacttcagtctggatgctgtggtggagaggctgcgcatggagagggta
acgtgctgctgctgggacgagatcctgtgtgacaccgaggagcggcagaaagagctggag
cgtctggtgacagagtatgagaaggccgctcagcagaggatcctcctgctgcaggaccgg
caagatgttgctgaggatgtcgatgctgtgacagcagagtgtttggcgctgagggagcaa
gtggctatctacgaggagcagctggccaacatggaggcccagcacaagacggcggtggag
agcatgttggagccagatgaagggacgacaggagcgatgagagctattacatttggtgtc
cctgacatcactgcggccctggatgtgaaggagtactactgccagctggctgagagcctc
cagtttgagtgcggtgcagcatcctctgctgtggttccccgtggtgatggaaaacaactg
caagtgggaggagctgcagggtcaaaggtgaaagacctgtcaaagatgagggacgtcagt
gaagtgaagaagctgattgcagagctacagaaggagctcgctgagcttgagaagtgtaac
gaggagctggaggacgaggttgagatgaagaaggctgcgtacatggacgagatcgccgag
ttagagggtactttagatgaaatgcggcagcaggaggaagacttccaggtgcagatgaag
gagcagtgtgaggactacaaagagctgctcagcgagaagatggcccgagaaatggaaata
accgcctacaggagtctgttggaagaagaggagtgcctgtgtggccagtga
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