Pseudochaenichthys georgianus (South Georgia icefish): 117454370
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Entry
117454370 CDS
T09629
Name
(RefSeq) pre-mRNA-processing factor 39
KO
K13217
pre-mRNA-processing factor 39
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pgeo03041
]
117454370
Spliceosome [BR:
pgeo03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
117454370
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
HAT_Syf1_CNRKL1_N
HAT_Syf1_CNRKL1_C
TPR_19
TPR_16
TPR_15
TPR_12
TPR_11
TPR_MalT
UTP6_C
HrpB1_HrpK
TPR_21
Motif
Other DBs
NCBI-GeneID:
117454370
NCBI-ProteinID:
XP_033949476
LinkDB
All DBs
Position
10:17500284..17509787
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AA seq
721 aa
AA seq
DB search
MAAEGCDELSGNGELEESSAMEASEVPALPPTEMSEENGSPPEAPQVSVGPDPATFCMPP
ATEDEEGEIPADFERLWKAAHDNPQDFTSWTDLLQYCEQESHMTASRRALEAFLARYPLC
YGYWKKYADLERRAGYNNKAEEVCIQGLQVIPLSVDLWIHYINLLLGTLDMNLPESPDRI
RSVFEEGVSAAGLDFHSDRLWDLYVEWEKEQGNMKNAAAVLDRVLRAPTQLYNTHYDKLK
EHLNGHEPKDVLSPEEYEELRAFCRQTQKAERAEQAQEEEEERPPGEEEPATPEGTDSEE
LMQKIREQVLIRRDNVYQDNEGEVRKRWNFEDAIKRPYFHVKPLDRVQLRAWHTYLDWEI
AQLNPDTKDPQQDPDQVDTEGSEVTPKPREETQDTAVSRDDYKVRILFERCLIACALYEE
FWIRYNQYLETQSVDEARAVLRRACEVHLANKPNIHLQWATFEERHGDLTEARRVLESLE
KSLPGLAVVRLRRAALERRAGQLDQSEALLREAVEESKEKPTLHAFYSIKLARLLLKLGR
NPGRARGVLQEALEISPDNDKLHLNLLELEVSGDPSAEAVQECVTRALAAPLAPHTKILF
SQRGLQFAEDYSNSIESVLSVYEEHQKLLKELGGTKREAENGDEETEKLMKSEDGSAVAV
SAQDPPTMPHVPITAPPPPVMGADASAQAGYGGYSSWYQQPQYGSYGYQNWNYNQGYYPP
S
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
atggcggcagaaggctgtgacgagttgagcggcaacggggagctggaagagtcctcagct
atggaggcctctgaggttcctgccttgcctccgactgagatgtccgaagagaacggcagc
cccccagaggcccctcaggtctccgttggccccgacccggccaccttctgcatgcccccg
gctacagaggacgaggagggagaaatacctgcagactttgagcggctgtggaaggccgca
cacgacaaccctcaggacttcaccagctggaccgacctgctgcagtactgcgagcaagag
agtcacatgacagcgtctcgcagagcgctggaggctttcctcgctcgctacccgctctgc
tacggctactggaagaagtacgctgacctggagcgccgcgcaggatacaacaacaaagca
gaggaggtgtgtattcagggtctccaggtcatccctctcagtgtagatctgtggatccat
tacatcaatctgctgttggggactctggacatgaacctgcccgagtcccccgatcggatt
cgcagtgtgttcgaggagggggtttcagcggcaggtctggacttccactcagaccggctc
tgggatctgtatgtggagtgggagaaggagcagggcaacatgaagaacgcagcagccgtc
ctggaccgagtcctcagagcccccacccagctctacaacacccactacgacaagttaaag
gaacatttgaacggccatgagcccaaagacgtcctctccccggaggagtacgaggagctg
agggcgttctgtcgtcagactcagaaagcagagcgagcggagcaggctcaggaggaagag
gaagagaggccgcccggggaggaagagcctgcaacccccgagggcacagactcagaggaa
ttgatgcagaagatcagggagcaggtgctgattcgcagggacaacgtttaccaggacaac
gagggagaagtccggaagagatggaactttgaagacgctatcaaacgcccctacttccac
gtgaagcccctggaccgcgtccagctgagagcctggcacacctacctggactgggagatc
gctcagctgaacccggacaccaaagacccccaacaagatccagaccaggtggacacagag
gggtcagaggtcacgccaaagcctcgggaagaaacacaggatactgcggtttctcgcgac
gactacaaggtccgcatccttttcgagcgatgtctgatcgcctgcgctctgtatgaggag
ttctggatcaggtacaaccagtacttggagacgcagagtgtggacgaggcgcgggccgtt
ctgaggcgagcctgtgaggtccacctggcgaacaaacccaacatccacctgcagtgggcc
accttcgaggagaggcacggcgacctcacggaggcgcgccgggtgctggagtctctggag
aaatcgctcccagggttggcggtggtccgtcttcgcagggcggctctggagaggcgagcg
ggtcagctggaccaatcagaggccttgctgcgggaggcggtggaggagtccaaagagaag
cccacgttacatgctttttattccatcaagctggctcgcctgctgctgaagctcggcagg
aacccaggcagagcccgaggagttctgcaggaggcgctggagatcagtccggataacgac
aagctgcacctgaacctgctggagctggaggtgtcgggcgacccctcggccgaggcggtg
caggagtgtgtgacgcgagccctggccgctcccctcgccccacacaccaagatcctcttc
tcacagagaggcctgcagttcgcagaggactacagcaactctatagagagcgtgctgtcc
gtctacgaggagcaccagaaactgctgaaggagctgggcggaaccaagagggaagcagag
aacggagatgaggaaacagagaagctgatgaaaagtgaagacggctcggctgttgctgta
tctgcacaagatccgcccaccatgccgcatgtccccatcaccgcccccccgccccccgtg
atgggcgctgacgctagcgctcaggccggatacgggggatacagcagctggtaccagcaa
ccgcagtacggcagctacggataccagaactggaactacaaccaaggctattatcctccc
agctaa
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