Pseudochaenichthys georgianus (South Georgia icefish): 117454817
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Entry
117454817 CDS
T09629
Name
(RefSeq) probable ATP-dependent RNA helicase ddx6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Pathway
pgeo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117454817
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pgeo03019
]
117454817
03036 Chromosome and associated proteins [BR:
pgeo03036
]
117454817
Enzymes [BR:
pgeo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
117454817
Messenger RNA biogenesis [BR:
pgeo03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
117454817
mRNA degradation factors
5'-3' decay
Decapping complex
117454817
Chromosome and associated proteins [BR:
pgeo03036
]
Eukaryotic type
Gene silencing
piRNA pathway
117454817
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
117454817
NCBI-ProteinID:
XP_033949907
LinkDB
All DBs
Position
11:complement(6047744..6060804)
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AA seq
489 aa
AA seq
DB search
MATARTENSGPVIMGLNKQNGQLRGQTKPAPVQPAPTTQGKAPAAPQTAGGAAQDGGGIK
FGDDWKKSLKLPPRDDRVRTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESI
PIALSGRDILARAKNGTGKSGAYLIPMLERIDLKKDYIQALVMVPTRELALQVSQISIQI
SKHLGGVKVMATTGGTNLRDDIMRLDETVHVVIATPGRILDLIKKGVAKVDRVQMMVMDE
ADKLLSQDFVVLIEDIISFLAKHRQILLYSATFPISVQKFMSKHLQKPYEINLMEELTLK
GITQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSTQRVELLAKKITQLGYSCFYIHAK
MMQEYRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGR
FGHLGLAINLITSEDRFNLKSIEDQLVTDIKPIPSSIDKSLYVAEFHTSGGDCDVEEIEE
KPGRQQDGK
NT seq
1470 nt
NT seq
+upstream
nt +downstream
nt
atggcaacggccagaacagaaaactctggccccgtcattatgggtctgaacaagcagaac
gggcagctcagaggacagaccaaaccagctccagtccagccagcacccacaactcaagga
aaggctccggctgcaccccagacagcgggcggtgccgctcaggacggaggaggcatcaag
ttcggagacgactggaagaagagcctaaagctccctcccagagacgacagagtcagaacc
tctgacgtcacgtctactaaggggaatgagtttgaagattactgtctcaaaagagaactc
ctgatgggtatctttgagatgggttgggagaaaccttcccctatccaggaggagagcatt
cccatcgccctgtccggacgggatattctggctcgggctaagaatggaacaggaaaaagt
ggagcctatctcatcccaatgctggagagaatagacctgaagaaggactacatacaggca
cttgtcatggtgcccacccgggagctggcactgcaggtgagccagatctccatccagatc
agcaagcacctggggggggtcaaagtcatggcaaccacagggggcaccaacctgcgagat
gacatcatgcgtctggatgagaccgtgcatgtggtcattgccacgcctggtaggatcctg
gacttgataaagaaaggcgttgcaaaagtggatagagtccagatgatggtgatggatgag
gcggataagctgctgtctcaggactttgtggtgctcattgaggatatcatcagcttcctg
gccaagcacaggcagatcctgctctactctgcaaccttccccatcagcgtgcagaagttc
atgtccaagcaccttcagaagccctatgagataaacctgatggaggagctgactctgaag
ggcatcactcagtactacgcctacgtcacggagaggcagaaagtccactgtctcaacacg
ctgttctccaggcttcagatcaaccagtcgatcatcttctgtaactccactcagagggtg
gagctgttggccaagaagatcactcagctgggatactcctgcttctacatccatgccaag
atgatgcaggaatacagaaaccgtgtgttccacgacttcagaaatggactgtgcagaaac
ctggtctgcactgatctgttcaccaggggcattgacatccaggctgtcaatgtggtcatc
aacttcgatttccccaagaacgctgagacgtacctccatcgcattggaagatcagggagg
ttcggtcacctgggcctggccatcaacctgatcacatcagaggaccgcttcaacctgaag
tccatcgaggaccagctggtgaccgacatcaagcccatccccagcagcatcgacaagagc
ctctacgtggccgagttccacacttctggaggagactgcgacgtggaggagatcgaggag
aaaccaggacgccagcaggacggcaaataa
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