Pseudochaenichthys georgianus (South Georgia icefish): 117454846
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Entry
117454846 CDS
T09629
Symbol
cnga1a
Name
(RefSeq) cyclic nucleotide gated channel subunit alpha 1a
KO
K04948
cyclic nucleotide gated channel alpha 1
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Pathway
pgeo04744
Phototransduction
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09150 Organismal Systems
09157 Sensory system
04744 Phototransduction
117454846 (cnga1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
pgeo04040
]
117454846 (cnga1a)
Ion channels [BR:
pgeo04040
]
Voltage-gated cation channels
Cyclic nucleotide-gated channel (CNG)
117454846 (cnga1a)
BRITE hierarchy
SSDB
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Gene cluster
GFIT
Motif
Pfam:
Ion_trans
CLZ
cNMP_binding
DUF6033
Piezo_TM1-24
DUF789
Serinc
SLC52_ribofla_tr
Zip
NPR3
Motif
Other DBs
NCBI-GeneID:
117454846
NCBI-ProteinID:
XP_033949973
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Position
1:22770630..22775950
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AA seq
638 aa
AA seq
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MASSTSLPHITVPTLAAIQLSTNSEGSSNDDVSSAESYLLNINNSNNNEEKKDMEKKERE
EKEAKEREEKEAKEKEEREKEKERQREKDKDKPKEIFILNPAGNLYYNWLLVITLPVMYN
WTMIIARASFEELQHDYIIYWVILDYTSDLIYLADMFLRTRTGYLEQGLMVKDKKLLLDR
YTTSFQFRLDFLSMLPTDFLYLYFGLDYPEIRINKLLRISRMLEFFTRAETKTNYPNIFR
IGNLIIYILIIIHWNACFFFSFSKYIGFGADDWVYPALDDPENPAFGEFGRKYSFSLYWS
TLTLTTIGETPPPALDSEFVFHVIDFLVGVLVFATIVGNIATMISNMNDAQAQFQSRIDN
IKHYMQARKVDTELELRVIKWFDYLWNNGKAQDEREVLRYLPDKLKAEIAIQVHMDTLKK
VRIFADCEAGLLIELVLKLQPQVFSPGDYICKKGDIGREMYIIKEGKLAVVADDGVKQFV
VLGSGSYFGEISILNIKGSKAGNRRTANIRSIGYSDLFCLSKDDLMESLLEYPDAKGMLE
DKGREILMKDGLIDLDPANIMPEAKELEEKVNKLYNTMELMQFKLKKILGKNNNTDKALR
DRIADLERLTGEEMEEEDEEEVLVKKEEAQGQGEKKEE
NT seq
1917 nt
NT seq
+upstream
nt +downstream
nt
atggcctcttccaccagccttccccacatcactgtgcccacactcgctgcaatacaactc
tccacaaacagtgaagggtccagcaatgatgacgtgagttcagctgaatcttatctgctc
aatattaataacagcaataacaatgaagaaaaaaaagatatggagaagaaggagagggaa
gaaaaggaggcaaaggagagggaagaaaaggaggcaaaggaaaaggaagagagggaaaag
gagaaggaaagacaaagggaaaaggacaaagataagccaaaagaaatatttatccttaat
cctgctggaaatctgtattacaactggctgctcgtaatcacactaccagtcatgtacaac
tggaccatgatcatagccagggcttcctttgaggagctacagcatgactacatcatttac
tgggttattctggactacacctcagatctgatctacctggctgacatgttcctcaggaca
agaacaggttaccttgagcaaggacttatggtaaaagataagaagctgctgcttgatcgc
tataccaccagcttccagtttcgtcttgacttcctttccatgttgcccactgacttcctc
tatttgtacttcggccttgactacccagagatccgcatcaacaagctgctgcgaatcagc
cgcatgttggagttcttcacaagggcagagacaaaaaccaactaccccaacatcttccgc
atcggaaacttgatcatttacatcctcattatcatccactggaacgcttgcttcttcttc
tctttctcaaaatacattggttttggtgccgacgactgggtctacccggctttggatgat
cctgaaaatcctgcatttggggagtttggaaggaagtattcattcagtctctactggtcc
acactgactctgacaaccattggagaaactccaccaccagccctggactctgaatttgta
ttccatgtgattgactttttagtaggggtcttggtatttgccaccattgtaggaaatatc
gccaccatgatctccaatatgaatgatgcccaagctcagtttcagtcacggattgacaac
atcaagcactacatgcaggcccgaaaggtcgacactgaacttgagttgcgagtcatcaag
tggtttgactatctttggaacaatggtaaggcacaggacgaaagagaggtgctgaggtat
cttccagacaaactgaaggctgagattgccatccaagtccacatggataccctcaagaaa
gttcgtatttttgcagactgtgaggcaggcctgctgatcgagctggtactcaagctccag
cctcaggtgttcagtcccggagactatatctgcaaaaagggtgatattggtcgcgagatg
tacataatcaaagaagggaaacttgcagttgtagctgatgatggtgtcaaacagtttgtt
gtgttgggaagtggaagctactttggtgagataagtattctcaatattaaaggcagcaaa
gcaggcaacaggcgaacagccaacattcgcagcattggatactcagacctcttctgcctg
tcaaaggatgacctgatggagtcactgctagagtatcctgatgccaaaggcatgctagag
gacaaagggcgagagatcctgatgaaagatggtctgatagatttggacccagctaacatc
atgcctgaggccaaggagctggaggagaaggtcaataaattgtacaacacaatggagctg
atgcaattcaagctgaagaagattctcggaaaaaacaataatactgataaggctttgaga
gatcgcattgcagatctagagcgcctcacaggagaggaaatggaagaggaggatgaggag
gaagtattggtgaaaaaggaagaggcacaagggcaaggggagaaaaaggaagaatag
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