Pseudochaenichthys georgianus (South Georgia icefish): 117454871
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Entry
117454871 CDS
T09629
Name
(RefSeq) CCR4-NOT transcription complex subunit 3-like isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Pathway
pgeo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117454871
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pgeo03019
]
117454871
Messenger RNA biogenesis [BR:
pgeo03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
117454871
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
117454871
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
7tm_6
Motif
Other DBs
NCBI-GeneID:
117454871
NCBI-ProteinID:
XP_033950031
LinkDB
All DBs
Position
11:9685094..9722251
Genome browser
AA seq
959 aa
AA seq
DB search
MADKRKLQGEIDRCLKKVAEGVEQFEDIWQKGKIWRSEGHLSKLHNAANANQKEKYEADL
KKEIKKLQRLRDQIKTWVASNEIKDKRQLVENRKLIETQMERFKIVERETKTKAYSKEGL
GLAQKVDPAQKEKEEVGTWLTNTIDTLNMQVDQFESEVESLSVQTRKKKGDKENQDRIEE
LKKFIEKHRHHIRMLETILRMLDNDSVQVDSVRKIKDDVEYYLDSSQDPDFEENEFLYDD
LDLDELTQTLVATSPPGQLEDEIFQHSSSTPTSTTSSSPIPPSPATCTTENSEDDKKRGR
STDSEVGQSPVKNGNPSSSLSSSSSSSSSSSSSSSSCSSSSFVSGLTSSSLVSMAPITGG
GPGANSHLGSLGGLLSNTSAGSYSNATQQPPHPSAQQQQAKSLVSSAPSAPISIPISSAN
SHMASSPPNAITQGLFTSSSQAQSLSGPTSTSNSLGLSLGLSLGKGGMSIPTSSMSGSLG
LSGMQASLSNMASLLSGSTPAPYAQAASSGAIGSGLPGSLGGIGISPSSSNSAVGSIGSG
SITVGGPTSSSGGLLGPAPGLSGISSGILGLGSGQSGMQGSSLMSLSPVGGLAPGSGVGV
IGSNGGSSGSAGSGVVGGNMSLSGRPPSQQKQNGSTSGVPFVSFFGDTGYSAVLADSTTD
SALTSASQSLSSQPSCLTSTANQTKDTGSSLLGSICLSSSSPSQAFYSEAKTVIGSSLLN
GPMSYSQSSDSIKPQETLSSLKSMAERAALSSGMEGDVPSLHLTPVSLSCLSSDIFPSST
TTQSGPSSAPQLSLSEVSIPPSLGVCPLGPVPLSKDQLYQQAMEEAAWTHMPHPSDSERI
RQYLMRNPCPTLTFHHQVPPPHSDTVEFYQRLSTETLFFIFYYLEGTKAQYLAAKALKKQ
SWRFHTKYMMWFQRHEEPKTITDEFEQGTYIYFDYEKWGQRKKEGFTFEYRYLEDRDLQ
NT seq
2880 nt
NT seq
+upstream
nt +downstream
nt
atggccgataaaaggaaactacaaggtgaaatagatcgatgtctgaaaaaagtagcggaa
ggagtcgaacagtttgaagacatttggcaaaagggcaagatttggagaagtgaaggacat
ctatccaaacttcacaatgcagcgaacgcaaatcagaaggagaaatatgaagcagacctc
aagaaagagattaaaaagctacagcgtcttcgagaccagatcaagacgtgggtggcttcc
aacgagatcaaagacaaaaggcagctagtagagaaccgcaaactcatagaaacgcaaatg
gagcggttcaaaatagtggagagagaaaccaagacgaaggcgtactctaaagaagggctg
ggtctggcccagaaggtggaccccgcccagaaggagaaggaggaggtcggcacgtggcta
acgaatacgatagacacgctgaacatgcaggtggaccagttcgagagcgaggtggagtcc
ctctcagtccagaccaggaaaaagaaaggagacaaagagaatcaggaccggattgaggag
ttgaagaagttcatcgaaaagcatcgtcaccacatccggatgctggagaccatactgagg
atgctggacaacgactcagtgcaggtggactccgtcaggaagatcaaggatgatgtggag
tattacctggactcgtcgcaggatccagacttcgaggagaacgagtttctctacgacgac
ctggacctggacgagctcactcagacgctggtcgccacctccccacccggacagctagag
gacgagatcttccagcactccagcagcacccccacctccaccacctcctcttcacccatc
cccccctcgcctgccacttgcactacggagaactctgaagatgacaagaagaggggacgg
tcaacagacagtgaagtcggtcagtcacctgtgaagaacggaaacccctcctcttcatta
tcctcttcctcctcctcctcctcctcctcttcttcttcttcttcttcctgctcctcttct
tcattcgtgtctggactgacctcgtcctctctcgtctccatggcgcccatcacgggggga
ggaccgggggccaacagtcacctgggcagcttggggggcctcctctccaacacgtcggcc
ggcagctacagcaacgccacccagcagccgccgcacccgtcggcacagcaacagcaggcc
aaaagcttagtgagctccgccccttcagctcccatctccatccccatcagctctgccaac
agccacatggcctcttctccccccaacgccatcacgcaggggctcttcacttccagctcc
caggcccagtctctgtcggggcccacgtccacctccaacagtctgggcctcagcctgggc
ctctcgctggggaaaggcggcatgtccatccccaccagctccatgtccgggagcctgggc
ctgtcagggatgcaggcgtccctgagcaacatggcgagcctcctgtcgggctccaccccg
gccccctacgctcaggcagcctcctcaggggccatcggctccggcctgcccggctctctg
ggtggcatcggcatcagcccctcctcctccaacagcgcagtgggctccatcggcagcggc
agcatcacggtcggcgggccaacctcctcctcgggggggctgctgggcccggcgccgggg
ctgagtggcatcagctccggtattctgggtctgggctccgggcagtcggggatgcagggg
tcctccctcatgtcgctcagcccggtcggagggttagcgcccggtagcggagtgggagtc
atcgggagcaacggaggcagctcgggatcagcagggagcggagtggtaggggggaacatg
tcgctctccggcaggccacccagccagcagaagcagaacggtagcaccagcggtgtaccc
tttgtgtctttttttggcgatacaggttacagcgctgtgttagcagacagcacaacagac
tccgccctcaccagtgccagccaatctctcagcagccaaccctcgtgtctgacctccaca
gccaatcagactaaggacactggttccagtctgctgggctccatctgtttgtcgtccagc
tccccgtcgcaggccttctacagcgaggccaagacggtgatcggcagcagcctgctgaac
ggacctatgtcctactcacagtcctccgacagcatcaagccccaggagactctgagcagc
ctgaagtccatggccgagcgagcagcactcagctcagggatggagggagacgtgccctcc
ctgcacctcaccccagtctctctctcctgtctgtcttcagacattttccccagcagcact
acgacccagtcgggcccctcgtcagcgcctcagctctcgctgtcggaggtcagcatcccc
ccgtcactgggggtgtgcccgctggggcccgtccccctctccaaagaccagctctaccaa
caggccatggaggaggcggcgtggacgcacatgccccacccgtccgactcggagaggatc
aggcagtacctgatgaggaacccgtgccccaccctgactttccaccaccaggtgcccccg
ccccactccgacactgtagagttctaccagaggctttccacggaaaccctcttcttcatc
ttttactacctggagggcactaaggcccagtatctggcagccaaggccctgaagaagcag
tcatggaggttccacacaaagtacatgatgtggttccagaggcacgaagaacccaagacc
atcacggatgagtttgagcagggaacgtacatttactttgattatgagaaatggggccag
cgcaagaaggaaggcttcacgtttgagtaccggtacctcgaggaccgagacctccagtga
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